RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	TCEAL2	Q9H3H9	227 aa	Predicted RBP	0.57	□□□□□ -2.32
PTCD3-209	ENST00000472044	BOLA2	Q9H3K6	86 aa		0.57	□□□□□ -2.32
PTCD3-209	ENST00000472044	C10orf95	Q9H7T3	257 aa		0.57	□□□□□ -2.32
PTCD3-209	ENST00000472044	LAMTOR3	Q9UHA4	124 aa		0.57	□□□□□ -2.32
PTCD3-209	ENST00000472044	RNF11	Q9Y3C5	154 aa		0.57	□□□□□ -2.32
PTCD3-209	ENST00000472044	SPTB	P11277	2137 aa		0.56	□□□□□ -2.32
PTCD3-209	ENST00000472044	ZDBF2	Q9HCK1	2354 aa		0.56	□□□□□ -2.32
PTCD3-209	ENST00000472044	KIAA1107	Q9UPP5	1409 aa		0.56	□□□□□ -2.32
PTCD3-209	ENST00000472044	C5orf67	F2Z3F1	127 aa		0.56	□□□□□ -2.32
PTCD3-209	ENST00000472044		K7EIL1	84 aa		0.56	□□□□□ -2.32
PTCD3-209	ENST00000472044	IGHV3-33	P01772	117 aa		0.56	□□□□□ -2.32
PTCD3-209	ENST00000472044	CIRBP	Q14011	172 aa	Known RBP	0.56	□□□□□ -2.32
PTCD3-209	ENST00000472044	LTC4S	Q16873	150 aa		0.56	□□□□□ -2.32
PTCD3-209	ENST00000472044	PRR15	Q8IV56	129 aa		0.56	□□□□□ -2.32
PTCD3-209	ENST00000472044	FAM216B	Q8N7L0	139 aa		0.56	□□□□□ -2.32
PTCD3-209	ENST00000472044	HOPX	Q9BPY8	73 aa	Predicted RBP	0.56	□□□□□ -2.32
PTCD3-209	ENST00000472044	BIN3	Q9NQY0	253 aa		0.56	□□□□□ -2.32
PTCD3-209	ENST00000472044		E5RI56	91 aa		0.55	□□□□□ -2.32
PTCD3-209	ENST00000472044	CST7	O76096	145 aa		0.55	□□□□□ -2.32
PTCD3-209	ENST00000472044	GLRX	P35754	106 aa		0.55	□□□□□ -2.32
PTCD3-209	ENST00000472044	FOXA3	P55318	350 aa	Predicted RBP	0.55	□□□□□ -2.32
PTCD3-209	ENST00000472044	FOXI2	Q6ZQN5	318 aa		0.55	□□□□□ -2.32
PTCD3-209	ENST00000472044	STX19	Q8N4C7	294 aa		0.55	□□□□□ -2.32
PTCD3-209	ENST00000472044	ASH1L	Q9NR48	2969 aa	Known RBP	0.55	□□□□□ -2.32
PTCD3-209	ENST00000472044	TRAPPC8	Q9Y2L5	1435 aa		0.55	□□□□□ -2.32
PTCD3-209	ENST00000472044		H3BQV1	296 aa		0.54	□□□□□ -2.32
PTCD3-209	ENST00000472044	CRYBA4	P53673	196 aa		0.54	□□□□□ -2.32
PTCD3-209	ENST00000472044	SPATA8	Q6RVD6	105 aa		0.54	□□□□□ -2.32
PTCD3-209	ENST00000472044	LINC00299	Q6ZSB3	139 aa		0.54	□□□□□ -2.32
PTCD3-209	ENST00000472044	CARD19	Q96LW7	228 aa		0.54	□□□□□ -2.32
PTCD3-209	ENST00000472044	MCEE	Q96PE7	176 aa		0.54	□□□□□ -2.32
PTCD3-209	ENST00000472044	KIAA1549L	Q6ZVL6	1849 aa		0.54	□□□□□ -2.32
PTCD3-209	ENST00000472044	TECPR2	O15040	1411 aa		0.54	□□□□□ -2.32
PTCD3-209	ENST00000472044		A0A096LPI6	279 aa		0.53	□□□□□ -2.32
PTCD3-209	ENST00000472044	PPP5D1	E7EU14	171 aa		0.53	□□□□□ -2.32
PTCD3-209	ENST00000472044	SERPINB1	P30740	379 aa		0.53	□□□□□ -2.32
PTCD3-209	ENST00000472044	MIR22HG	Q0VDD5	57 aa		0.53	□□□□□ -2.32
PTCD3-209	ENST00000472044	LINC00269	Q8N2A0	174 aa		0.53	□□□□□ -2.32
PTCD3-209	ENST00000472044	CCL4L1	Q8NHW4	92 aa		0.53	□□□□□ -2.32
PTCD3-209	ENST00000472044	NEK7	Q8TDX7	302 aa		0.53	□□□□□ -2.32
PTCD3-209	ENST00000472044	BORCS8	Q96FH0	119 aa		0.53	□□□□□ -2.32
PTCD3-209	ENST00000472044	CST11	Q9H112	138 aa		0.53	□□□□□ -2.32
PTCD3-209	ENST00000472044	OTOR	Q9NRC9	128 aa		0.53	□□□□□ -2.32
PTCD3-209	ENST00000472044	GID8	Q9NWU2	228 aa		0.53	□□□□□ -2.32
PTCD3-209	ENST00000472044	NUBP2	Q9Y5Y2	271 aa		0.53	□□□□□ -2.32
PTCD3-209	ENST00000472044	BCL9	O00512	1426 aa		0.53	□□□□□ -2.32
PTCD3-209	ENST00000472044	USP54	Q70EL1	1684 aa		0.53	□□□□□ -2.33
PTCD3-209	ENST00000472044		A0A0J9YY99	117 aa		0.52	□□□□□ -2.33
PTCD3-209	ENST00000472044	TRDV1	A0A1B0GX56	115 aa		0.52	□□□□□ -2.33
PTCD3-209	ENST00000472044	KPNA4	O00629	521 aa	Predicted RBP	0.52	□□□□□ -2.33
PTCD3-209	ENST00000472044	SPINK9	Q5DT21	86 aa		0.52	□□□□□ -2.33
PTCD3-209	ENST00000472044	C3orf33	Q6P1S2	294 aa		0.52	□□□□□ -2.33
PTCD3-209	ENST00000472044	CROCCP2	Q86T23	111 aa		0.52	□□□□□ -2.33
PTCD3-209	ENST00000472044	ATOH7	Q8N100	152 aa		0.52	□□□□□ -2.33
PTCD3-209	ENST00000472044	FAM24B	Q8N5W8	94 aa		0.52	□□□□□ -2.33
PTCD3-209	ENST00000472044	LRTM1	Q9HBL6	345 aa		0.52	□□□□□ -2.33
PTCD3-209	ENST00000472044	IL20	Q9NYY1	176 aa		0.52	□□□□□ -2.33
PTCD3-209	ENST00000472044	FRAS1	Q86XX4	4008 aa		0.52	□□□□□ -2.33
PTCD3-209	ENST00000472044	TANC2	Q9HCD6	1990 aa		0.52	□□□□□ -2.33
PTCD3-209	ENST00000472044	TRAV23DV6	A0A075B6W5	121 aa		0.51	□□□□□ -2.33
PTCD3-209	ENST00000472044	CD14	P08571	375 aa		0.51	□□□□□ -2.33
PTCD3-209	ENST00000472044	MRPS36	P82909	103 aa	Known RBP	0.51	□□□□□ -2.33
PTCD3-209	ENST00000472044	TRIQK	Q629K1	86 aa		0.51	□□□□□ -2.33
PTCD3-209	ENST00000472044	DIRC1	Q969H9	104 aa		0.51	□□□□□ -2.33
PTCD3-209	ENST00000472044	OR4C12	Q96R67	309 aa		0.51	□□□□□ -2.33
PTCD3-209	ENST00000472044	TAF9B	Q9HBM6	251 aa		0.51	□□□□□ -2.33
PTCD3-209	ENST00000472044	MED11	Q9P086	117 aa		0.51	□□□□□ -2.33
PTCD3-209	ENST00000472044	TPRKB	Q9Y3C4	175 aa		0.51	□□□□□ -2.33
PTCD3-209	ENST00000472044	ANK1	P16157	1881 aa		0.5	□□□□□ -2.33
PTCD3-209	ENST00000472044		A0A0D9SG42	100 aa		0.5	□□□□□ -2.33
PTCD3-209	ENST00000472044	MAP1LC3B2	A6NCE7	125 aa		0.5	□□□□□ -2.33
PTCD3-209	ENST00000472044	FABP4	P15090	132 aa		0.5	□□□□□ -2.33
PTCD3-209	ENST00000472044	GNG10	P50151	68 aa		0.5	□□□□□ -2.33
PTCD3-209	ENST00000472044	DIAPH2-AS1	Q14236	149 aa		0.5	□□□□□ -2.33
PTCD3-209	ENST00000472044	TMEM78	Q5T7P6	136 aa		0.5	□□□□□ -2.33
PTCD3-209	ENST00000472044	ZCCHC23	Q6ZST2	131 aa		0.5	□□□□□ -2.33
PTCD3-209	ENST00000472044	ISOC1	Q96CN7	298 aa		0.5	□□□□□ -2.33
PTCD3-209	ENST00000472044	EFCAB11	Q9BUY7	163 aa		0.5	□□□□□ -2.33
PTCD3-209	ENST00000472044	NAT8B	Q9UHF3	227 aa		0.5	□□□□□ -2.33
PTCD3-209	ENST00000472044	APC	P25054	2843 aa		0.49	□□□□□ -2.33
PTCD3-209	ENST00000472044	TRBV30	A0A0K0K1B3	111 aa		0.49	□□□□□ -2.33
PTCD3-209	ENST00000472044		A6NN06	94 aa		0.49	□□□□□ -2.33
PTCD3-209	ENST00000472044	MT-ND6	P03923	174 aa		0.49	□□□□□ -2.33
PTCD3-209	ENST00000472044	PDE6G	P18545	87 aa		0.49	□□□□□ -2.33
PTCD3-209	ENST00000472044	G0S2	P27469	103 aa		0.49	□□□□□ -2.33
PTCD3-209	ENST00000472044	VMA21	Q3ZAQ7	101 aa		0.49	□□□□□ -2.33
PTCD3-209	ENST00000472044	OCIAD2	Q56VL3	154 aa		0.49	□□□□□ -2.33
PTCD3-209	ENST00000472044	PPP1R2P3	Q6NXS1	205 aa		0.49	□□□□□ -2.33
PTCD3-209	ENST00000472044	DCUN1D2	Q6PH85	259 aa		0.49	□□□□□ -2.33
PTCD3-209	ENST00000472044	OR4B1	Q8NGF8	309 aa		0.49	□□□□□ -2.33
PTCD3-209	ENST00000472044	DYDC1	Q8WWB3	177 aa		0.49	□□□□□ -2.33
PTCD3-209	ENST00000472044	TCOF1	Q13428	1488 aa	Known RBP	0.48	□□□□□ -2.33
PTCD3-209	ENST00000472044		H7BYZ3	331 aa		0.48	□□□□□ -2.33
PTCD3-209	ENST00000472044	BCL2	P10415	239 aa		0.48	□□□□□ -2.33
PTCD3-209	ENST00000472044	FXYD4	P59646	89 aa		0.48	□□□□□ -2.33
PTCD3-209	ENST00000472044		Q6ZQY7	126 aa		0.48	□□□□□ -2.33
PTCD3-209	ENST00000472044	LIMD2	Q9BT23	127 aa		0.48	□□□□□ -2.33
PTCD3-209	ENST00000472044	BOK	Q9UMX3	212 aa	Predicted RBP	0.48	□□□□□ -2.33
PTCD3-209	ENST00000472044	CTTNBP2	Q8WZ74	1663 aa		0.48	□□□□□ -2.33
PTCD3-209	ENST00000472044	ATG2A	Q2TAZ0	1938 aa		0.48	□□□□□ -2.33

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