RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 C6orf223Q8N319 242 aa12.22□□□□□ -0.45
COL7A1-208ENST00000470076 SAT2Q96F10 170 aaPredicted RBP12.22□□□□□ -0.45
COL7A1-208ENST00000470076 LINC00588Q9Y4M8 146 aa12.22□□□□□ -0.45
COL7A1-208ENST00000470076 LSM5Q9Y4Y9 91 aaKnown RBP12.22□□□□□ -0.45
COL7A1-208ENST00000470076 FAM25EA8MYX2 175 aa12.21□□□□□ -0.45
COL7A1-208ENST00000470076 H3BQ15 152 aa12.21□□□□□ -0.45
COL7A1-208ENST00000470076 PLA2G10O15496 165 aa12.21□□□□□ -0.45
COL7A1-208ENST00000470076 LYRM1O43325 122 aa12.21□□□□□ -0.45
COL7A1-208ENST00000470076 LINC00612Q8N6U2 182 aa12.21□□□□□ -0.45
COL7A1-208ENST00000470076 OR1L4Q8NGR5 311 aa12.21□□□□□ -0.45
COL7A1-208ENST00000470076 ODF3Q96PU9 254 aa12.21□□□□□ -0.45
COL7A1-208ENST00000470076 PFDN5Q99471 154 aa12.21□□□□□ -0.45
COL7A1-208ENST00000470076 PARD6GQ9BYG4 376 aaPredicted RBP12.21□□□□□ -0.45
COL7A1-208ENST00000470076 UQCC1Q9NVA1 299 aa12.21□□□□□ -0.45
COL7A1-208ENST00000470076 CST7O76096 145 aa12.2□□□□□ -0.46
COL7A1-208ENST00000470076 TCRBP04435 133 aa12.2□□□□□ -0.46
COL7A1-208ENST00000470076 PVALBP20472 110 aaPredicted RBP12.2□□□□□ -0.46
COL7A1-208ENST00000470076 TNP2Q05952 138 aa12.2□□□□□ -0.46
COL7A1-208ENST00000470076 MIC13Q5XKP0 118 aa12.2□□□□□ -0.46
COL7A1-208ENST00000470076 ZNF431Q8TF32 576 aaPredicted RBP12.2□□□□□ -0.46
COL7A1-208ENST00000470076 ZNF503Q96F45 646 aa12.2□□□□□ -0.46
COL7A1-208ENST00000470076 C11orf1Q9H5F2 150 aa12.2□□□□□ -0.46
COL7A1-208ENST00000470076 WDR83OSQ9Y284 106 aa12.2□□□□□ -0.46
COL7A1-208ENST00000470076 C5orf51A6NDU8 294 aa12.19□□□□□ -0.46
COL7A1-208ENST00000470076 SNURFLB1AK76 121 aa12.19□□□□□ -0.46
COL7A1-208ENST00000470076 NPIPB6E9PJ23 425 aa12.19□□□□□ -0.46
COL7A1-208ENST00000470076 RLN2P04090 185 aa12.19□□□□□ -0.46
COL7A1-208ENST00000470076 M6PRP20645 277 aa12.19□□□□□ -0.46
COL7A1-208ENST00000470076 LEPP41159 167 aa12.19□□□□□ -0.46
COL7A1-208ENST00000470076 OR5I1Q13606 314 aa12.19□□□□□ -0.46
COL7A1-208ENST00000470076 VWC2Q2TAL6 325 aa12.19□□□□□ -0.46
COL7A1-208ENST00000470076 SSX7Q7RTT5 188 aa12.19□□□□□ -0.46
COL7A1-208ENST00000470076 GNPNAT1Q96EK6 184 aaPredicted RBP12.19□□□□□ -0.46
COL7A1-208ENST00000470076 TRAV6A0A075B6T7 132 aa12.18□□□□□ -0.46
COL7A1-208ENST00000470076 TRAV26-1A0A087WT03 109 aa12.18□□□□□ -0.46
COL7A1-208ENST00000470076 TRAV5A0A0B4J249 113 aa12.18□□□□□ -0.46
COL7A1-208ENST00000470076 FAM24AA6NFZ4 105 aa12.18□□□□□ -0.46
COL7A1-208ENST00000470076 ZNF253O75346 499 aa12.18□□□□□ -0.46
COL7A1-208ENST00000470076 CT45A10P0DMU9 189 aa12.18□□□□□ -0.46
COL7A1-208ENST00000470076 RPL29P47914 159 aaKnown RBP12.18□□□□□ -0.46
COL7A1-208ENST00000470076 C12orf45Q8N5I9 185 aaPredicted RBP12.18□□□□□ -0.46
COL7A1-208ENST00000470076 RXFP4Q8TDU9 374 aa12.18□□□□□ -0.46
COL7A1-208ENST00000470076 C2orf50Q96LR7 162 aa12.18□□□□□ -0.46
COL7A1-208ENST00000470076 PYGO2Q9BRQ0 406 aa12.18□□□□□ -0.46
COL7A1-208ENST00000470076 NUDT15Q9NV35 164 aa12.18□□□□□ -0.46
COL7A1-208ENST00000470076 TRAV12-3A0A0B4J271 114 aa12.17□□□□□ -0.46
COL7A1-208ENST00000470076 GAGE12BA1L429 117 aa12.17□□□□□ -0.46
COL7A1-208ENST00000470076 GAGE7O76087 117 aa12.17□□□□□ -0.46
COL7A1-208ENST00000470076 GAGE12FP0CL80 117 aa12.17□□□□□ -0.46
COL7A1-208ENST00000470076 GAGE12GP0CL81 117 aa12.17□□□□□ -0.46
COL7A1-208ENST00000470076 GAGE12IP0CL82 117 aa12.17□□□□□ -0.46
COL7A1-208ENST00000470076 S100A11P31949 105 aa12.17□□□□□ -0.46
COL7A1-208ENST00000470076 SULT1A1P50225 295 aa12.17□□□□□ -0.46
COL7A1-208ENST00000470076 MRPL53Q96EL3 112 aaKnown RBP12.17□□□□□ -0.46
COL7A1-208ENST00000470076 SEC22CQ9BRL7 303 aa12.17□□□□□ -0.46
COL7A1-208ENST00000470076 LYRM2Q9NU23 88 aaPredicted RBP12.17□□□□□ -0.46
COL7A1-208ENST00000470076 SLC39A9Q9NUM3 307 aa12.17□□□□□ -0.46
COL7A1-208ENST00000470076 ZNF586Q9NXT0 402 aa12.17□□□□□ -0.46
COL7A1-208ENST00000470076 UBE2L5PA0A1B0GUS4 154 aa12.16□□□□□ -0.46
COL7A1-208ENST00000470076 H3BNG1 76 aa12.16□□□□□ -0.46
COL7A1-208ENST00000470076 J3KRW8 73 aa12.16□□□□□ -0.46
COL7A1-208ENST00000470076 HBG1P69891 147 aa12.16□□□□□ -0.46
COL7A1-208ENST00000470076 HBG2P69892 147 aa12.16□□□□□ -0.46
COL7A1-208ENST00000470076 BAXQ07812 192 aa12.16□□□□□ -0.46
COL7A1-208ENST00000470076 DAZ2Q13117 558 aaKnown RBP12.16□□□□□ -0.46
COL7A1-208ENST00000470076 STX12Q86Y82 276 aa12.16□□□□□ -0.46
COL7A1-208ENST00000470076 CHAC2Q8WUX2 184 aa12.16□□□□□ -0.46
COL7A1-208ENST00000470076 Q9H8V8 135 aa12.16□□□□□ -0.46
COL7A1-208ENST00000470076 ABCA13Q86UQ4 5058 aa12.15□□□□□ -0.46
COL7A1-208ENST00000470076 TRBV19A0A075B6N1 114 aa12.15□□□□□ -0.46
COL7A1-208ENST00000470076 C16orf90A8MZG2 172 aa12.15□□□□□ -0.46
COL7A1-208ENST00000470076 SLC25A5P05141 298 aaKnown RBP12.15□□□□□ -0.46
COL7A1-208ENST00000470076 HOXA5P20719 270 aa12.15□□□□□ -0.46
COL7A1-208ENST00000470076 S100A10P60903 97 aa12.15□□□□□ -0.46
COL7A1-208ENST00000470076 TTC32Q5I0X7 151 aa12.15□□□□□ -0.46
COL7A1-208ENST00000470076 TMEM252Q8N6L7 170 aa12.15□□□□□ -0.46
COL7A1-208ENST00000470076 TMEM14CQ9P0S9 112 aa12.15□□□□□ -0.46
COL7A1-208ENST00000470076 A0A0J9YY99 117 aa12.14□□□□□ -0.47
COL7A1-208ENST00000470076 H2AFB2P0C5Z0 115 aa12.14□□□□□ -0.47
COL7A1-208ENST00000470076 IL15RAQ13261 267 aa12.14□□□□□ -0.47
COL7A1-208ENST00000470076 PDE6HQ13956 83 aa12.14□□□□□ -0.47
COL7A1-208ENST00000470076 ATP6V1FQ16864 119 aa12.14□□□□□ -0.47
COL7A1-208ENST00000470076 UPK3BQ9BT76 320 aa12.14□□□□□ -0.47
COL7A1-208ENST00000470076 PRELID1Q9Y255 219 aa12.14□□□□□ -0.47
COL7A1-208ENST00000470076 HSPG2P98160 4391 aa12.14□□□□□ -0.47
COL7A1-208ENST00000470076 IGSF23A1L1A6 192 aa12.13□□□□□ -0.47
COL7A1-208ENST00000470076 M0R3E3 92 aa12.13□□□□□ -0.47
COL7A1-208ENST00000470076 MPDU1O75352 247 aa12.13□□□□□ -0.47
COL7A1-208ENST00000470076 HIST1H1EP10412 219 aaKnown RBP12.13□□□□□ -0.47
COL7A1-208ENST00000470076 FGF7P21781 194 aa12.13□□□□□ -0.47
COL7A1-208ENST00000470076 RAB32Q13637 225 aa12.13□□□□□ -0.47
COL7A1-208ENST00000470076 ZNF680Q8NEM1 530 aa12.13□□□□□ -0.47
COL7A1-208ENST00000470076 LINC00477Q96M19 166 aa12.13□□□□□ -0.47
COL7A1-208ENST00000470076 CCDC32Q9BV29 185 aa12.13□□□□□ -0.47
COL7A1-208ENST00000470076 NDUFA13Q9P0J0 144 aa12.13□□□□□ -0.47
COL7A1-208ENST00000470076 TIMM9Q9Y5J7 89 aa12.13□□□□□ -0.47
COL7A1-208ENST00000470076 LRP1BQ9NZR2 4599 aa12.12□□□□□ -0.47
COL7A1-208ENST00000470076 C7orf71A4D174 169 aa12.12□□□□□ -0.47
COL7A1-208ENST00000470076 CDK2AP2O75956 126 aa12.12□□□□□ -0.47
COL7A1-208ENST00000470076 Q6ZTI0 123 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 98 ms