RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 IGHV1-24A0A0C4DH33 117 aa6.95□□□□□ -1.3
SYNE1-217ENST00000466159 CLEC3BP05452 202 aa6.95□□□□□ -1.3
SYNE1-217ENST00000466159 LINC00614P0C842 121 aa6.95□□□□□ -1.3
SYNE1-217ENST00000466159 CT45A10P0DMU9 189 aa6.95□□□□□ -1.3
SYNE1-217ENST00000466159 RHOGP84095 191 aa6.95□□□□□ -1.3
SYNE1-217ENST00000466159 C21orf62-AS1Q17RA5 79 aa6.95□□□□□ -1.3
SYNE1-217ENST00000466159 LINC00173Q6ZV60 143 aa6.95□□□□□ -1.3
SYNE1-217ENST00000466159 FAM110DQ8TAY7 271 aaPredicted RBP6.95□□□□□ -1.3
SYNE1-217ENST00000466159 ZNF502Q8TBZ5 544 aa6.95□□□□□ -1.3
SYNE1-217ENST00000466159 TMEM190Q8WZ59 177 aa6.95□□□□□ -1.3
SYNE1-217ENST00000466159 TMEM208Q9BTX3 173 aa6.95□□□□□ -1.3
SYNE1-217ENST00000466159 IGHV3OR16-10A0A075B7F0 116 aa6.95□□□□□ -1.3
SYNE1-217ENST00000466159 NPFFO15130 113 aa6.95□□□□□ -1.3
SYNE1-217ENST00000466159 IGHG4P01861 327 aa6.95□□□□□ -1.3
SYNE1-217ENST00000466159 GAGE1Q13065 139 aa6.95□□□□□ -1.3
SYNE1-217ENST00000466159 Q8TAT8 98 aa6.95□□□□□ -1.3
SYNE1-217ENST00000466159 TXN2Q99757 166 aa6.95□□□□□ -1.3
SYNE1-217ENST00000466159 GOLT1BQ9Y3E0 138 aa6.95□□□□□ -1.3
SYNE1-217ENST00000466159 ABCA2Q9BZC7 2435 aa6.94□□□□□ -1.3
SYNE1-217ENST00000466159 CENPVL3A0A0U1RRI6 287 aa6.94□□□□□ -1.3
SYNE1-217ENST00000466159 SH2D1AO60880 128 aa6.94□□□□□ -1.3
SYNE1-217ENST00000466159 CSN3P07498 182 aa6.94□□□□□ -1.3
SYNE1-217ENST00000466159 IGLC3P0DOY3 106 aa6.94□□□□□ -1.3
SYNE1-217ENST00000466159 RIGQ13278 110 aa6.94□□□□□ -1.3
SYNE1-217ENST00000466159 VGLL1Q99990 258 aa6.94□□□□□ -1.3
SYNE1-217ENST00000466159 IGHV3-66A0A0C4DH42 116 aa6.94□□□□□ -1.3
SYNE1-217ENST00000466159 MUC21A0A0G2JKD1 596 aa6.94□□□□□ -1.3
SYNE1-217ENST00000466159 MUC21A0A140T8X8 626 aa6.94□□□□□ -1.3
SYNE1-217ENST00000466159 SCGB2A1O75556 95 aa6.94□□□□□ -1.3
SYNE1-217ENST00000466159 IGHV4-39P01824 125 aa6.94□□□□□ -1.3
SYNE1-217ENST00000466159 BATFQ16520 125 aa6.94□□□□□ -1.3
SYNE1-217ENST00000466159 MUC21Q5SSG8 566 aa6.94□□□□□ -1.3
SYNE1-217ENST00000466159 FAM162BQ5T6X4 162 aa6.94□□□□□ -1.3
SYNE1-217ENST00000466159 CLEC19AQ6UXS0 136 aa6.94□□□□□ -1.3
SYNE1-217ENST00000466159 TMEM219Q86XT9 240 aa6.94□□□□□ -1.3
SYNE1-217ENST00000466159 CHCHD1Q96BP2 118 aaKnown RBP6.94□□□□□ -1.3
SYNE1-217ENST00000466159 PRR25Q96S07 402 aa6.94□□□□□ -1.3
SYNE1-217ENST00000466159 IGHV3OR16-13A0A075B7E8 117 aa6.93□□□□□ -1.3
SYNE1-217ENST00000466159 IGHV3-74A0A0B4J1X5 117 aa6.93□□□□□ -1.3
SYNE1-217ENST00000466159 TMEM189A5PLL7 270 aa6.93□□□□□ -1.3
SYNE1-217ENST00000466159 NPSP0C0P6 89 aa6.93□□□□□ -1.3
SYNE1-217ENST00000466159 ZNF80P51504 273 aaPredicted RBP6.93□□□□□ -1.3
SYNE1-217ENST00000466159 LYZL1Q6UWQ5 148 aa6.93□□□□□ -1.3
SYNE1-217ENST00000466159 MRPL52Q86TS9 123 aaKnown RBP6.93□□□□□ -1.3
SYNE1-217ENST00000466159 CCDC140Q96MF4 163 aa6.93□□□□□ -1.3
SYNE1-217ENST00000466159 TMEM70Q9BUB7 260 aa6.93□□□□□ -1.3
SYNE1-217ENST00000466159 ZFAND3Q9H8U3 227 aa6.93□□□□□ -1.3
SYNE1-217ENST00000466159 SERTM2A0A1B0GWG4 89 aa6.93□□□□□ -1.3
SYNE1-217ENST00000466159 TMEM213A2RRL7 107 aa6.93□□□□□ -1.3
SYNE1-217ENST00000466159 M0QZK8 103 aa6.93□□□□□ -1.3
SYNE1-217ENST00000466159 LEPROTL1O95214 131 aa6.93□□□□□ -1.3
SYNE1-217ENST00000466159 RPLP1P05386 114 aaKnown RBP6.93□□□□□ -1.3
SYNE1-217ENST00000466159 UQCR10Q9UDW1 63 aa6.93□□□□□ -1.3
SYNE1-217ENST00000466159 PIEZO1Q92508 2521 aa6.93□□□□□ -1.3
SYNE1-217ENST00000466159 PKD1L2Q7Z442 2459 aa6.92□□□□□ -1.3
SYNE1-217ENST00000466159 BUB3O43684 328 aa6.92□□□□□ -1.3
SYNE1-217ENST00000466159 ANKRD39Q53RE8 183 aa6.92□□□□□ -1.3
SYNE1-217ENST00000466159 SAPCD1Q5SSQ6 148 aa6.92□□□□□ -1.3
SYNE1-217ENST00000466159 Q6ZN92 141 aa6.92□□□□□ -1.3
SYNE1-217ENST00000466159 RNF182Q8N6D2 247 aa6.92□□□□□ -1.3
SYNE1-217ENST00000466159 C5orf56Q8N8D9 126 aa6.92□□□□□ -1.3
SYNE1-217ENST00000466159 GATD1Q8NB37 220 aa6.92□□□□□ -1.3
SYNE1-217ENST00000466159 LINC00527Q9UJ94 153 aa6.92□□□□□ -1.3
SYNE1-217ENST00000466159 MAP1AP78559 2803 aaPredicted RBP6.92□□□□□ -1.3
SYNE1-217ENST00000466159 TRAV9-2A0A087WT02 112 aa6.92□□□□□ -1.3
SYNE1-217ENST00000466159 IGHV3-49A0A0A0MS15 119 aa6.92□□□□□ -1.3
SYNE1-217ENST00000466159 CLPSL1A2RUU4 121 aa6.92□□□□□ -1.3
SYNE1-217ENST00000466159 PRAC2D3DTV9 90 aa6.92□□□□□ -1.3
SYNE1-217ENST00000466159 ZNF207O43670 478 aaKnown RBP6.92□□□□□ -1.3
SYNE1-217ENST00000466159 IGLL1P15814 213 aa6.92□□□□□ -1.3
SYNE1-217ENST00000466159 ERCC8Q13216 396 aa6.92□□□□□ -1.3
SYNE1-217ENST00000466159 Q6AWC8 147 aa6.92□□□□□ -1.3
SYNE1-217ENST00000466159 BRD3OSQ6XYD6 125 aa6.92□□□□□ -1.3
SYNE1-217ENST00000466159 TIMM8BQ9Y5J9 83 aaPredicted RBP6.92□□□□□ -1.3
SYNE1-217ENST00000466159 SYS1-DBNDD2H3BUS1 97 aa6.91□□□□□ -1.3
SYNE1-217ENST00000466159 GOSR1O95249 250 aa6.91□□□□□ -1.3
SYNE1-217ENST00000466159 PCP4P48539 62 aa6.91□□□□□ -1.3
SYNE1-217ENST00000466159 KLK9Q2XQG4 91 aa6.91□□□□□ -1.3
SYNE1-217ENST00000466159 COX8CQ7Z4L0 72 aa6.91□□□□□ -1.3
SYNE1-217ENST00000466159 KLHDC1Q8N7A1 406 aa6.91□□□□□ -1.3
SYNE1-217ENST00000466159 MCRIP2Q9BUT9 160 aaKnown RBP6.91□□□□□ -1.3
SYNE1-217ENST00000466159 KLK9Q9UKQ9 250 aa6.91□□□□□ -1.3
SYNE1-217ENST00000466159 SPG11Q96JI7 2443 aa6.91□□□□□ -1.3
SYNE1-217ENST00000466159 A0A1B0GW15 77 aa6.91□□□□□ -1.3
SYNE1-217ENST00000466159 CRXO43186 299 aaPredicted RBP6.91□□□□□ -1.3
SYNE1-217ENST00000466159 PAX8Q06710 450 aa6.91□□□□□ -1.3
SYNE1-217ENST00000466159 ZNF493Q6ZR52 646 aa6.91□□□□□ -1.3
SYNE1-217ENST00000466159 ZNF575Q86XF7 245 aa6.91□□□□□ -1.3
SYNE1-217ENST00000466159 AMN1Q8IY45 258 aa6.91□□□□□ -1.3
SYNE1-217ENST00000466159 ARL6IP6Q8N6S5 226 aa6.91□□□□□ -1.3
SYNE1-217ENST00000466159 IGHV4-61A0A0C4DH41 118 aa6.9□□□□□ -1.3
SYNE1-217ENST00000466159 OR4C46A6NHA9 309 aa6.9□□□□□ -1.3
SYNE1-217ENST00000466159 HNRNPA3P51991 378 aaKnown RBP6.9□□□□□ -1.3
SYNE1-217ENST00000466159 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa6.9□□□□□ -1.3
SYNE1-217ENST00000466159 PIFOQ8TCI5 191 aa6.9□□□□□ -1.3
SYNE1-217ENST00000466159 EEF1AKMT3Q96AZ1 226 aa6.9□□□□□ -1.3
SYNE1-217ENST00000466159 TRAV40A0A0B4J280 105 aa6.9□□□□□ -1.31
SYNE1-217ENST00000466159 D6R8Y8 96 aa6.9□□□□□ -1.31
SYNE1-217ENST00000466159 H0Y8G0 127 aa6.9□□□□□ -1.31
SYNE1-217ENST00000466159 TFPI2P48307 235 aa6.9□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms