RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 C7orf66A4D0T2 115 aa10.72□□□□□ -0.69
SKA3-204ENST00000462482 ZNF701M0R085 212 aaPredicted RBP10.72□□□□□ -0.69
SKA3-204ENST00000462482 MBPP02686 304 aaPredicted RBP10.72□□□□□ -0.69
SKA3-204ENST00000462482 CAV2P51636 162 aa10.72□□□□□ -0.69
SKA3-204ENST00000462482 OPCMLQ14982 345 aa10.72□□□□□ -0.69
SKA3-204ENST00000462482 BAK1Q16611 211 aa10.72□□□□□ -0.69
SKA3-204ENST00000462482 C12orf45Q8N5I9 185 aaPredicted RBP10.72□□□□□ -0.69
SKA3-204ENST00000462482 MAPKAPK5-AS1Q8N8E1 139 aa10.72□□□□□ -0.69
SKA3-204ENST00000462482 MITD1Q8WV92 249 aa10.72□□□□□ -0.69
SKA3-204ENST00000462482 ODF3Q96PU9 254 aa10.72□□□□□ -0.69
SKA3-204ENST00000462482 PFDN5Q99471 154 aa10.72□□□□□ -0.69
SKA3-204ENST00000462482 MGST2Q99735 147 aa10.72□□□□□ -0.69
SKA3-204ENST00000462482 PYGO2Q9BRQ0 406 aa10.72□□□□□ -0.69
SKA3-204ENST00000462482 PARD6GQ9BYG4 376 aaPredicted RBP10.72□□□□□ -0.69
SKA3-204ENST00000462482 TRAV12-3A0A0B4J271 114 aa10.71□□□□□ -0.69
SKA3-204ENST00000462482 FAM25EA8MYX2 175 aa10.71□□□□□ -0.69
SKA3-204ENST00000462482 PRAC2D3DTV9 90 aa10.71□□□□□ -0.69
SKA3-204ENST00000462482 H3BNG1 76 aa10.71□□□□□ -0.69
SKA3-204ENST00000462482 SLC17A3O00476 420 aa10.71□□□□□ -0.69
SKA3-204ENST00000462482 PVALBP20472 110 aaPredicted RBP10.71□□□□□ -0.69
SKA3-204ENST00000462482 ARL16Q0P5N6 197 aa10.71□□□□□ -0.69
SKA3-204ENST00000462482 LINC00612Q8N6U2 182 aa10.71□□□□□ -0.69
SKA3-204ENST00000462482 TMEM37Q8WXS4 190 aa10.71□□□□□ -0.69
SKA3-204ENST00000462482 C20orf85Q9H1P6 137 aa10.71□□□□□ -0.69
SKA3-204ENST00000462482 LSM5Q9Y4Y9 91 aaKnown RBP10.71□□□□□ -0.69
SKA3-204ENST00000462482 TRGV2A0A075B6R0 118 aa10.7□□□□□ -0.7
SKA3-204ENST00000462482 A0A1W2PPQ1 181 aa10.7□□□□□ -0.7
SKA3-204ENST00000462482 IGLC2P0DOY2 106 aa10.7□□□□□ -0.7
SKA3-204ENST00000462482 KIR3DS1Q14943 382 aa10.7□□□□□ -0.7
SKA3-204ENST00000462482 SPATA12Q7Z6I5 190 aa10.7□□□□□ -0.7
SKA3-204ENST00000462482 NRARPQ7Z6K4 114 aa10.7□□□□□ -0.7
SKA3-204ENST00000462482 ZNF680Q8NEM1 530 aa10.7□□□□□ -0.7
SKA3-204ENST00000462482 Q9H3A6 140 aa10.7□□□□□ -0.7
SKA3-204ENST00000462482 UQCC1Q9NVA1 299 aa10.7□□□□□ -0.7
SKA3-204ENST00000462482 C5orf51A6NDU8 294 aa10.69□□□□□ -0.7
SKA3-204ENST00000462482 NPIPB6E9PJ23 425 aa10.69□□□□□ -0.7
SKA3-204ENST00000462482 H3BQ15 152 aa10.69□□□□□ -0.7
SKA3-204ENST00000462482 SLC25A5P05141 298 aaKnown RBP10.69□□□□□ -0.7
SKA3-204ENST00000462482 CT45A10P0DMU9 189 aa10.69□□□□□ -0.7
SKA3-204ENST00000462482 BTF3P20290 206 aaKnown RBP10.69□□□□□ -0.7
SKA3-204ENST00000462482 DAZ2Q13117 558 aaKnown RBP10.69□□□□□ -0.7
SKA3-204ENST00000462482 MIC13Q5XKP0 118 aa10.69□□□□□ -0.7
SKA3-204ENST00000462482 SAT2Q96F10 170 aaPredicted RBP10.69□□□□□ -0.7
SKA3-204ENST00000462482 UPK3BQ9BT76 320 aa10.69□□□□□ -0.7
SKA3-204ENST00000462482 MRPS16Q9Y3D3 137 aaKnown RBP10.69□□□□□ -0.7
SKA3-204ENST00000462482 RYR1P21817 5038 aa10.68□□□□□ -0.7
SKA3-204ENST00000462482 CCSO14618 274 aa10.68□□□□□ -0.7
SKA3-204ENST00000462482 ZNF253O75346 499 aa10.68□□□□□ -0.7
SKA3-204ENST00000462482 CST7O76096 145 aa10.68□□□□□ -0.7
SKA3-204ENST00000462482 HOXA5P20719 270 aa10.68□□□□□ -0.7
SKA3-204ENST00000462482 BAXQ07812 192 aa10.68□□□□□ -0.7
SKA3-204ENST00000462482 ESRGQ1W209 222 aa10.68□□□□□ -0.7
SKA3-204ENST00000462482 MORN5Q5VZ52 161 aa10.68□□□□□ -0.7
SKA3-204ENST00000462482 ZNF431Q8TF32 576 aaPredicted RBP10.68□□□□□ -0.7
SKA3-204ENST00000462482 MRPL53Q96EL3 112 aaKnown RBP10.68□□□□□ -0.7
SKA3-204ENST00000462482 KRTAP4-5Q9BYR2 181 aa10.68□□□□□ -0.7
SKA3-204ENST00000462482 TIMM9Q9Y5J7 89 aa10.68□□□□□ -0.7
SKA3-204ENST00000462482 TRAV5A0A0B4J249 113 aa10.67□□□□□ -0.7
SKA3-204ENST00000462482 C7orf71A4D174 169 aa10.67□□□□□ -0.7
SKA3-204ENST00000462482 IL7P13232 177 aa10.67□□□□□ -0.7
SKA3-204ENST00000462482 S100A11P31949 105 aa10.67□□□□□ -0.7
SKA3-204ENST00000462482 BTCP35070 178 aa10.67□□□□□ -0.7
SKA3-204ENST00000462482 HBG1P69891 147 aa10.67□□□□□ -0.7
SKA3-204ENST00000462482 HBG2P69892 147 aa10.67□□□□□ -0.7
SKA3-204ENST00000462482 Q6ZTI0 123 aa10.67□□□□□ -0.7
SKA3-204ENST00000462482 STX12Q86Y82 276 aa10.67□□□□□ -0.7
SKA3-204ENST00000462482 TMPRSS5Q9H3S3 457 aa10.67□□□□□ -0.7
SKA3-204ENST00000462482 SLC39A9Q9NUM3 307 aa10.67□□□□□ -0.7
SKA3-204ENST00000462482 PRELID1Q9Y255 219 aa10.67□□□□□ -0.7
SKA3-204ENST00000462482 WDR83OSQ9Y284 106 aa10.67□□□□□ -0.7
SKA3-204ENST00000462482 NACAE9PAV3 2078 aa10.66□□□□□ -0.7
SKA3-204ENST00000462482 FAM24AA6NFZ4 105 aa10.66□□□□□ -0.7
SKA3-204ENST00000462482 RPL29P47914 159 aaKnown RBP10.66□□□□□ -0.7
SKA3-204ENST00000462482 S100A10P60903 97 aa10.66□□□□□ -0.7
SKA3-204ENST00000462482 LINC00477Q96M19 166 aa10.66□□□□□ -0.7
SKA3-204ENST00000462482 RBM38Q9H0Z9 239 aaKnown RBP10.66□□□□□ -0.7
SKA3-204ENST00000462482 AAMDCQ9H7C9 122 aa10.66□□□□□ -0.7
SKA3-204ENST00000462482 GSN-AS1Q9NRJ2 163 aa10.66□□□□□ -0.7
SKA3-204ENST00000462482 ZNF586Q9NXT0 402 aa10.66□□□□□ -0.7
SKA3-204ENST00000462482 TRBV19A0A075B6N1 114 aa10.65□□□□□ -0.7
SKA3-204ENST00000462482 TRGV1A0A0A0MS02 117 aa10.65□□□□□ -0.7
SKA3-204ENST00000462482 UBE2L5PA0A1B0GUS4 154 aa10.65□□□□□ -0.7
SKA3-204ENST00000462482 SULT1A1P50225 295 aa10.65□□□□□ -0.7
SKA3-204ENST00000462482 EIF4E3Q8N5X7 224 aaKnown RBP10.65□□□□□ -0.7
SKA3-204ENST00000462482 C2orf50Q96LR7 162 aa10.65□□□□□ -0.7
SKA3-204ENST00000462482 EREGO14944 169 aa10.64□□□□□ -0.71
SKA3-204ENST00000462482 LYRM1O43325 122 aa10.64□□□□□ -0.71
SKA3-204ENST00000462482 MPDU1O75352 247 aa10.64□□□□□ -0.71
SKA3-204ENST00000462482 GPX1P07203 203 aa10.64□□□□□ -0.71
SKA3-204ENST00000462482 HIST1H1EP10412 219 aaKnown RBP10.64□□□□□ -0.71
SKA3-204ENST00000462482 RNASE4P34096 147 aaKnown RBP10.64□□□□□ -0.71
SKA3-204ENST00000462482 PDE6HQ13956 83 aa10.64□□□□□ -0.71
SKA3-204ENST00000462482 ATP6V1FQ16864 119 aa10.64□□□□□ -0.71
SKA3-204ENST00000462482 Q8N1X5 172 aa10.64□□□□□ -0.71
SKA3-204ENST00000462482 SDHCQ99643 169 aaPredicted RBP10.64□□□□□ -0.71
SKA3-204ENST00000462482 KRTAP1-5Q9BYS1 174 aa10.64□□□□□ -0.71
SKA3-204ENST00000462482 PTTG2Q9NZH5 202 aa10.64□□□□□ -0.71
SKA3-204ENST00000462482 TMEM14CQ9P0S9 112 aa10.64□□□□□ -0.71
SKA3-204ENST00000462482 FUT9Q9Y231 359 aa10.64□□□□□ -0.71
SKA3-204ENST00000462482 ABCA13Q86UQ4 5058 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms