RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 C7orf50Q9BRJ6 194 aaKnown RBP5.14□□□□□ -1.59
USP54-208ENST00000461520 NIPSNAP3BQ9BS92 247 aa5.14□□□□□ -1.59
USP54-208ENST00000461520 RSG1Q9BU20 258 aa5.14□□□□□ -1.59
USP54-208ENST00000461520 TMEM147Q9BVK8 224 aa5.14□□□□□ -1.59
USP54-208ENST00000461520 SCRT1Q9BWW7 348 aa5.14□□□□□ -1.59
USP54-208ENST00000461520 CTDSP1Q9GZU7 261 aa5.14□□□□□ -1.59
USP54-208ENST00000461520 SLC25A22Q9H936 323 aa5.14□□□□□ -1.59
USP54-208ENST00000461520 DOK5Q9P104 306 aa5.14□□□□□ -1.59
USP54-208ENST00000461520 IGLV5-37A0A075B6J1 123 aa5.13□□□□□ -1.59
USP54-208ENST00000461520 C9orf170A2RU37 121 aa5.13□□□□□ -1.59
USP54-208ENST00000461520 H3BP45 60 aa5.13□□□□□ -1.59
USP54-208ENST00000461520 H3BRN7 92 aa5.13□□□□□ -1.59
USP54-208ENST00000461520 DUSP14O95147 198 aaKnown RBP5.13□□□□□ -1.59
USP54-208ENST00000461520 IFNA21P01568 189 aa5.13□□□□□ -1.59
USP54-208ENST00000461520 IL5P05113 134 aa5.13□□□□□ -1.59
USP54-208ENST00000461520 GATA2P23769 480 aaPredicted RBP5.13□□□□□ -1.59
USP54-208ENST00000461520 PLP1P60201 277 aa5.13□□□□□ -1.59
USP54-208ENST00000461520 B2MP61769 119 aa5.13□□□□□ -1.59
USP54-208ENST00000461520 LGALS9BQ3B8N2 356 aa5.13□□□□□ -1.59
USP54-208ENST00000461520 SPANXN2Q5MJ10 180 aa5.13□□□□□ -1.59
USP54-208ENST00000461520 AMTNQ6UX39 209 aa5.13□□□□□ -1.59
USP54-208ENST00000461520 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa5.13□□□□□ -1.59
USP54-208ENST00000461520 CYP2G1PQ6ZSU1 146 aa5.13□□□□□ -1.59
USP54-208ENST00000461520 ACOT7LQ6ZUV0 252 aa5.13□□□□□ -1.59
USP54-208ENST00000461520 S100A7AQ86SG5 101 aa5.13□□□□□ -1.59
USP54-208ENST00000461520 C17orf77Q96MU5 243 aa5.13□□□□□ -1.59
USP54-208ENST00000461520 TMEM208Q9BTX3 173 aa5.13□□□□□ -1.59
USP54-208ENST00000461520 SLC25A39Q9BZJ4 359 aaPredicted RBP5.13□□□□□ -1.59
USP54-208ENST00000461520 SRRQ9GZT4 340 aa5.13□□□□□ -1.59
USP54-208ENST00000461520 PSENENQ9NZ42 101 aa5.13□□□□□ -1.59
USP54-208ENST00000461520 YTHDF2Q9Y5A9 579 aaKnown RBP5.13□□□□□ -1.59
USP54-208ENST00000461520 PKD1P98161 4303 aa5.13□□□□□ -1.59
USP54-208ENST00000461520 A0A1B0GVY2 172 aa5.12□□□□□ -1.59
USP54-208ENST00000461520 SMCO3A2RU48 225 aa5.12□□□□□ -1.59
USP54-208ENST00000461520 PMS2P5A8MQ11 134 aa5.12□□□□□ -1.59
USP54-208ENST00000461520 FNDC10F2Z333 226 aa5.12□□□□□ -1.59
USP54-208ENST00000461520 ZNF701M0R085 212 aaPredicted RBP5.12□□□□□ -1.59
USP54-208ENST00000461520 HYPMO75409 117 aa5.12□□□□□ -1.59
USP54-208ENST00000461520 ADAP1O75689 374 aa5.12□□□□□ -1.59
USP54-208ENST00000461520 NDUFB6O95139 128 aa5.12□□□□□ -1.59
USP54-208ENST00000461520 INSP01308 110 aa5.12□□□□□ -1.59
USP54-208ENST00000461520 RPL7P18124 248 aaKnown RBP5.12□□□□□ -1.59
USP54-208ENST00000461520 INPP1P49441 399 aa5.12□□□□□ -1.59
USP54-208ENST00000461520 CNN1P51911 297 aaKnown RBP5.12□□□□□ -1.59
USP54-208ENST00000461520 DAD1P61803 113 aa5.12□□□□□ -1.59
USP54-208ENST00000461520 SELENOTP62341 195 aa5.12□□□□□ -1.59
USP54-208ENST00000461520 POLR2GP62487 172 aaKnown RBP eCLIP5.12□□□□□ -1.59
USP54-208ENST00000461520 RNF212Q495C1 297 aa5.12□□□□□ -1.59
USP54-208ENST00000461520 OR11H7Q8NGC8 314 aa5.12□□□□□ -1.59
USP54-208ENST00000461520 SMIM8Q96KF7 97 aa5.12□□□□□ -1.59
USP54-208ENST00000461520 SHANK2-AS3Q9BTD1 123 aa5.12□□□□□ -1.59
USP54-208ENST00000461520 SDF2L1Q9HCN8 221 aa5.12□□□□□ -1.59
USP54-208ENST00000461520 NPVFQ9HCQ7 196 aa5.12□□□□□ -1.59
USP54-208ENST00000461520 RNF24Q9Y225 148 aa5.12□□□□□ -1.59
USP54-208ENST00000461520 HIGD1AQ9Y241 93 aa5.12□□□□□ -1.59
USP54-208ENST00000461520 A0A087X0K7 114 aa5.11□□□□□ -1.59
USP54-208ENST00000461520 TRAV8-2A0A0B4J237 113 aa5.11□□□□□ -1.59
USP54-208ENST00000461520 LYRM9A8MSI8 78 aa5.11□□□□□ -1.59
USP54-208ENST00000461520 CENPXA8MT69 81 aa5.11□□□□□ -1.59
USP54-208ENST00000461520 K7EPK0 472 aa5.11□□□□□ -1.59
USP54-208ENST00000461520 RTL8CO15255 209 aa5.11□□□□□ -1.59
USP54-208ENST00000461520 CRXO43186 299 aaPredicted RBP5.11□□□□□ -1.59
USP54-208ENST00000461520 SSSCA1O60232 199 aa5.11□□□□□ -1.59
USP54-208ENST00000461520 OR4E1P0C645 316 aa5.11□□□□□ -1.59
USP54-208ENST00000461520 LINC00869P0C866 280 aa5.11□□□□□ -1.59
USP54-208ENST00000461520 TSPOP30536 169 aa5.11□□□□□ -1.59
USP54-208ENST00000461520 TAS2R30P59541 319 aa5.11□□□□□ -1.59
USP54-208ENST00000461520 DLK1P80370 383 aa5.11□□□□□ -1.59
USP54-208ENST00000461520 FGL1Q08830 312 aa5.11□□□□□ -1.59
USP54-208ENST00000461520 BAK1Q16611 211 aa5.11□□□□□ -1.59
USP54-208ENST00000461520 SPINK13Q1W4C9 94 aa5.11□□□□□ -1.59
USP54-208ENST00000461520 TRIQKQ629K1 86 aa5.11□□□□□ -1.59
USP54-208ENST00000461520 TMEM14EPQ6UXP3 125 aa5.11□□□□□ -1.59
USP54-208ENST00000461520 UBE2DNLQ8IWF7 75 aa5.11□□□□□ -1.59
USP54-208ENST00000461520 OR10P1Q8NGE3 313 aa5.11□□□□□ -1.59
USP54-208ENST00000461520 BOLA2-SMG1P6H3BVE0 249 aa5.1□□□□□ -1.59
USP54-208ENST00000461520 M0R2N4 97 aa5.1□□□□□ -1.59
USP54-208ENST00000461520 M0R2Z0 102 aa5.1□□□□□ -1.59
USP54-208ENST00000461520 TSC22D2O75157 780 aa5.1□□□□□ -1.59
USP54-208ENST00000461520 OR5G3P0C626 314 aa5.1□□□□□ -1.59
USP54-208ENST00000461520 HTN3P15516 51 aa5.1□□□□□ -1.59
USP54-208ENST00000461520 CXCL3P19876 107 aa5.1□□□□□ -1.59
USP54-208ENST00000461520 RRAS2P62070 204 aaPredicted RBP5.1□□□□□ -1.59
USP54-208ENST00000461520 IAH1Q2TAA2 248 aaPredicted RBP5.1□□□□□ -1.59
USP54-208ENST00000461520 CNPY1Q3B7I2 92 aa5.1□□□□□ -1.59
USP54-208ENST00000461520 Q6ZR54 194 aa5.1□□□□□ -1.59
USP54-208ENST00000461520 TMEM256Q8N2U0 113 aa5.1□□□□□ -1.59
USP54-208ENST00000461520 RNF182Q8N6D2 247 aa5.1□□□□□ -1.59
USP54-208ENST00000461520 C15orf53Q8NAA6 179 aa5.1□□□□□ -1.59
USP54-208ENST00000461520 ZNF738Q8NE65 137 aa5.1□□□□□ -1.59
USP54-208ENST00000461520 OR8A1Q8NGG7 326 aa5.1□□□□□ -1.59
USP54-208ENST00000461520 LRRC20Q8TCA0 184 aa5.1□□□□□ -1.59
USP54-208ENST00000461520 MITD1Q8WV92 249 aa5.1□□□□□ -1.59
USP54-208ENST00000461520 UHRF2Q96PU4 802 aa5.1□□□□□ -1.59
USP54-208ENST00000461520 GGACTQ9BVM4 153 aa5.1□□□□□ -1.59
USP54-208ENST00000461520 ARL6Q9H0F7 186 aa5.1□□□□□ -1.59
USP54-208ENST00000461520 ARV1Q9H2C2 271 aa5.1□□□□□ -1.59
USP54-208ENST00000461520 FLVCR2Q9UPI3 526 aa5.1□□□□□ -1.59
USP54-208ENST00000461520 IGLV2-18A0A075B6J9 118 aa5.09□□□□□ -1.59
USP54-208ENST00000461520 ZNF705GA8MUZ8 300 aaPredicted RBP5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms