RNA–Protein interactions for RNA: ENST00000459979.2

HOXD3-204, Transcript of homeobox D3, humanhuman

TSL 1 (best)

Gene HOXD3, Length 1,055 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-204ENST00000459979 MRPL53Q96EL3 112 aaKnown RBP13.26□□□□□ -0.29
HOXD3-204ENST00000459979 SLC25A2Q9BXI2 301 aa13.26□□□□□ -0.29
HOXD3-204ENST00000459979 CELA1Q9UNI1 258 aa13.26□□□□□ -0.29
HOXD3-204ENST00000459979 DNAH10Q8IVF4 4471 aa13.25□□□□□ -0.29
HOXD3-204ENST00000459979 PRAC2D3DTV9 90 aa13.25□□□□□ -0.29
HOXD3-204ENST00000459979 NDUFB4O95168 129 aa13.25□□□□□ -0.29
HOXD3-204ENST00000459979 RHOBP62745 196 aa13.25□□□□□ -0.29
HOXD3-204ENST00000459979 RGS21Q2M5E4 152 aa13.25□□□□□ -0.29
HOXD3-204ENST00000459979 C12orf74Q32Q52 190 aa13.25□□□□□ -0.29
HOXD3-204ENST00000459979 SCGB1C1Q8TD33 95 aa13.25□□□□□ -0.29
HOXD3-204ENST00000459979 HERC2O95714 4834 aa13.24□□□□□ -0.29
HOXD3-204ENST00000459979 TRAV10A0A0B4J240 114 aa13.24□□□□□ -0.29
HOXD3-204ENST00000459979 GIPP09681 153 aaPredicted RBP13.24□□□□□ -0.29
HOXD3-204ENST00000459979 SPART-AS1P0CW21 52 aa13.24□□□□□ -0.29
HOXD3-204ENST00000459979 PYYP10082 97 aa13.24□□□□□ -0.29
HOXD3-204ENST00000459979 RRN3P1Q2M238 152 aa13.24□□□□□ -0.29
HOXD3-204ENST00000459979 Q6ZTC4 211 aa13.24□□□□□ -0.29
HOXD3-204ENST00000459979 MIR17HGQ75NE6 70 aa13.24□□□□□ -0.29
HOXD3-204ENST00000459979 OR10J6PQ8NGY7 276 aa13.24□□□□□ -0.29
HOXD3-204ENST00000459979 SMIM3Q9BZL3 60 aa13.24□□□□□ -0.29
HOXD3-204ENST00000459979 WFDC1Q9HC57 220 aa13.24□□□□□ -0.29
HOXD3-204ENST00000459979 PPP1R14DQ9NXH3 145 aa13.24□□□□□ -0.29
HOXD3-204ENST00000459979 FUT9Q9Y231 359 aa13.24□□□□□ -0.29
HOXD3-204ENST00000459979 PRELID1Q9Y255 219 aa13.24□□□□□ -0.29
HOXD3-204ENST00000459979 TEX48A0A1B0GUV7 120 aa13.23□□□□□ -0.29
HOXD3-204ENST00000459979 CDKN1BP46527 198 aa13.23□□□□□ -0.29
HOXD3-204ENST00000459979 OXA1LQ15070 435 aa13.23□□□□□ -0.29
HOXD3-204ENST00000459979 TMEM256Q8N2U0 113 aa13.23□□□□□ -0.29
HOXD3-204ENST00000459979 AQP10Q96PS8 301 aa13.23□□□□□ -0.29
HOXD3-204ENST00000459979 ODF3Q96PU9 254 aa13.23□□□□□ -0.29
HOXD3-204ENST00000459979 TMEM208Q9BTX3 173 aa13.23□□□□□ -0.29
HOXD3-204ENST00000459979 DKK2Q9UBU2 259 aa13.23□□□□□ -0.29
HOXD3-204ENST00000459979 LOC102723971A0A1B0GUV8 181 aa13.22□□□□□ -0.29
HOXD3-204ENST00000459979 NPIPB6E9PJ23 425 aa13.22□□□□□ -0.29
HOXD3-204ENST00000459979 NBEAP1P0C6P0 100 aa13.22□□□□□ -0.29
HOXD3-204ENST00000459979 TSPOP30536 169 aa13.22□□□□□ -0.29
HOXD3-204ENST00000459979 BAP18Q8IXM2 172 aa13.22□□□□□ -0.29
HOXD3-204ENST00000459979 C20orf144Q9BQM9 153 aa13.22□□□□□ -0.29
HOXD3-204ENST00000459979 OR51M1Q9H341 326 aa13.22□□□□□ -0.29
HOXD3-204ENST00000459979 TIMM9Q9Y5J7 89 aa13.22□□□□□ -0.29
HOXD3-204ENST00000459979 VPS13DQ5THJ4 4388 aa13.21□□□□□ -0.29
HOXD3-204ENST00000459979 TRAV12-2A0A075B6T6 113 aa13.21□□□□□ -0.29
HOXD3-204ENST00000459979 FFAR4Q5NUL3 377 aa13.21□□□□□ -0.29
HOXD3-204ENST00000459979 FXYD5Q96DB9 178 aa13.21□□□□□ -0.29
HOXD3-204ENST00000459979 M0R3E3 92 aa13.2□□□□□ -0.3
HOXD3-204ENST00000459979 EMP1P54849 157 aa13.2□□□□□ -0.3
HOXD3-204ENST00000459979 RNF141Q8WVD5 230 aa13.2□□□□□ -0.3
HOXD3-204ENST00000459979 PAXXQ9BUH6 204 aa13.2□□□□□ -0.3
HOXD3-204ENST00000459979 AAMDCQ9H7C9 122 aa13.2□□□□□ -0.3
HOXD3-204ENST00000459979 APLNQ9ULZ1 77 aa13.2□□□□□ -0.3
HOXD3-204ENST00000459979 YTHDF2Q9Y5A9 579 aaKnown RBP13.2□□□□□ -0.3
HOXD3-204ENST00000459979 CT45A10P0DMU9 189 aa13.19□□□□□ -0.3
HOXD3-204ENST00000459979 PRB4P10163 310 aaPredicted RBP13.19□□□□□ -0.3
HOXD3-204ENST00000459979 TAS2R60P59551 318 aa13.19□□□□□ -0.3
HOXD3-204ENST00000459979 ZNF266Q14584 549 aa13.19□□□□□ -0.3
HOXD3-204ENST00000459979 Q5BKY6 102 aa13.19□□□□□ -0.3
HOXD3-204ENST00000459979 FAM222AQ5U5X8 452 aa13.19□□□□□ -0.3
HOXD3-204ENST00000459979 BLNKQ8WV28 456 aa13.19□□□□□ -0.3
HOXD3-204ENST00000459979 ZNF503Q96F45 646 aa13.19□□□□□ -0.3
HOXD3-204ENST00000459979 DEFB131BA0A096LNP1 70 aa13.18□□□□□ -0.3
HOXD3-204ENST00000459979 ZNF705GA8MUZ8 300 aaPredicted RBP13.18□□□□□ -0.3
HOXD3-204ENST00000459979 IGLL5B9A064 214 aa13.18□□□□□ -0.3
HOXD3-204ENST00000459979 TAS2R45P59539 299 aa13.18□□□□□ -0.3
HOXD3-204ENST00000459979 ZNF767PQ75MW2 155 aa13.18□□□□□ -0.3
HOXD3-204ENST00000459979 LYPD1Q8N2G4 141 aa13.18□□□□□ -0.3
HOXD3-204ENST00000459979 EXOC3-AS1Q8N2X6 119 aa13.18□□□□□ -0.3
HOXD3-204ENST00000459979 LINC00477Q96M19 166 aa13.18□□□□□ -0.3
HOXD3-204ENST00000459979 LINC01587Q99440 93 aa13.18□□□□□ -0.3
HOXD3-204ENST00000459979 NIPSNAP3BQ9BS92 247 aa13.18□□□□□ -0.3
HOXD3-204ENST00000459979 H7BYZ3 331 aa13.17□□□□□ -0.3
HOXD3-204ENST00000459979 M6PRP20645 277 aa13.17□□□□□ -0.3
HOXD3-204ENST00000459979 ICAM4Q14773 271 aa13.17□□□□□ -0.3
HOXD3-204ENST00000459979 ACOT6Q3I5F7 207 aaPredicted RBP13.17□□□□□ -0.3
HOXD3-204ENST00000459979 C9orf47Q6ZRZ4 202 aa13.17□□□□□ -0.3
HOXD3-204ENST00000459979 OR2G3Q8NGZ4 309 aa13.17□□□□□ -0.3
HOXD3-204ENST00000459979 PLAC8L1A1L4L8 177 aa13.16□□□□□ -0.3
HOXD3-204ENST00000459979 LYRM9A8MSI8 78 aa13.16□□□□□ -0.3
HOXD3-204ENST00000459979 OR7C2O60412 319 aa13.16□□□□□ -0.3
HOXD3-204ENST00000459979 PRM2P04554 102 aa13.16□□□□□ -0.3
HOXD3-204ENST00000459979 OR10J4P0C629 311 aa13.16□□□□□ -0.3
HOXD3-204ENST00000459979 LEPP41159 167 aa13.16□□□□□ -0.3
HOXD3-204ENST00000459979 KIR3DS1Q14943 382 aa13.16□□□□□ -0.3
HOXD3-204ENST00000459979 KHDC3LQ587J8 217 aa13.16□□□□□ -0.3
HOXD3-204ENST00000459979 GFI1BQ5VTD9 330 aa13.16□□□□□ -0.3
HOXD3-204ENST00000459979 ZNF493Q6ZR52 646 aa13.16□□□□□ -0.3
HOXD3-204ENST00000459979 FAM19A4Q96LR4 140 aa13.16□□□□□ -0.3
HOXD3-204ENST00000459979 PSMG3Q9BT73 122 aaPredicted RBP13.16□□□□□ -0.3
HOXD3-204ENST00000459979 DNAH6Q9C0G6 4158 aa13.15□□□□□ -0.3
HOXD3-204ENST00000459979 IGHV4-4A0A075B6R2 117 aa13.15□□□□□ -0.3
HOXD3-204ENST00000459979 AZU1P20160 251 aa13.15□□□□□ -0.3
HOXD3-204ENST00000459979 INO80EQ8NBZ0 244 aaPredicted RBP13.15□□□□□ -0.3
HOXD3-204ENST00000459979 OR2T35Q8NGX2 323 aa13.15□□□□□ -0.3
HOXD3-204ENST00000459979 PHYHIPLQ96FC7 376 aa13.15□□□□□ -0.3
HOXD3-204ENST00000459979 FAM210BQ96KR6 192 aa13.15□□□□□ -0.3
HOXD3-204ENST00000459979 AGPAT4-IT1Q9H0P7 198 aa13.15□□□□□ -0.3
HOXD3-204ENST00000459979 NMBP08949 121 aa13.14□□□□□ -0.31
HOXD3-204ENST00000459979 UBE2L3P68036 154 aaKnown RBP13.14□□□□□ -0.31
HOXD3-204ENST00000459979 PQLC2Q6ZP29 291 aa13.14□□□□□ -0.31
HOXD3-204ENST00000459979 C16orf74Q96GX8 76 aa13.14□□□□□ -0.31
HOXD3-204ENST00000459979 TNFSF18Q9UNG2 199 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms