RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 AURKAIP1Q9NWT8 199 aaPredicted RBP6.53□□□□□ -1.36
SYNE1-214ENST00000454018 SMAD5-AS1Q9Y6J3 95 aa6.53□□□□□ -1.36
SYNE1-214ENST00000454018 DNAH3Q8TD57 4116 aa6.53□□□□□ -1.36
SYNE1-214ENST00000454018 TRGV11A0A075B6L2 103 aa6.52□□□□□ -1.37
SYNE1-214ENST00000454018 ZNF688P0C7X2 276 aa6.52□□□□□ -1.37
SYNE1-214ENST00000454018 STAG3L2P0CL84 134 aa6.52□□□□□ -1.37
SYNE1-214ENST00000454018 STAG3L3P0CL85 134 aa6.52□□□□□ -1.37
SYNE1-214ENST00000454018 ARL14EPLP0DKL9 152 aa6.52□□□□□ -1.37
SYNE1-214ENST00000454018 PYYP10082 97 aa6.52□□□□□ -1.37
SYNE1-214ENST00000454018 TMEM88Q6PEY1 159 aa6.52□□□□□ -1.37
SYNE1-214ENST00000454018 LRRC20Q8TCA0 184 aa6.52□□□□□ -1.37
SYNE1-214ENST00000454018 CLEC5AQ9NY25 188 aa6.52□□□□□ -1.37
SYNE1-214ENST00000454018 TRBV19A0A075B6N1 114 aa6.51□□□□□ -1.37
SYNE1-214ENST00000454018 MAP1LC3B2A6NCE7 125 aa6.51□□□□□ -1.37
SYNE1-214ENST00000454018 H3BQ15 152 aa6.51□□□□□ -1.37
SYNE1-214ENST00000454018 CXorf1O96002 111 aa6.51□□□□□ -1.37
SYNE1-214ENST00000454018 OR10J4P0C629 311 aa6.51□□□□□ -1.37
SYNE1-214ENST00000454018 SULT1A2P50226 295 aa6.51□□□□□ -1.37
SYNE1-214ENST00000454018 PSMG4Q5JS54 123 aa6.51□□□□□ -1.37
SYNE1-214ENST00000454018 FAM24BQ8N5W8 94 aa6.51□□□□□ -1.37
SYNE1-214ENST00000454018 FAM213BQ8TBF2 198 aa6.51□□□□□ -1.37
SYNE1-214ENST00000454018 FXYD5Q96DB9 178 aa6.51□□□□□ -1.37
SYNE1-214ENST00000454018 ZNF503Q96F45 646 aa6.51□□□□□ -1.37
SYNE1-214ENST00000454018 C17orf77Q96MU5 243 aa6.51□□□□□ -1.37
SYNE1-214ENST00000454018 MAP1LC3BQ9GZQ8 125 aa6.51□□□□□ -1.37
SYNE1-214ENST00000454018 ZNF331Q9NQX6 463 aaPredicted RBP6.51□□□□□ -1.37
SYNE1-214ENST00000454018 ZNF586Q9NXT0 402 aa6.51□□□□□ -1.37
SYNE1-214ENST00000454018 FBN3Q75N90 2809 aa6.51□□□□□ -1.37
SYNE1-214ENST00000454018 SLC17A3O00476 420 aa6.5□□□□□ -1.37
SYNE1-214ENST00000454018 HMGB3O15347 200 aaKnown RBP6.5□□□□□ -1.37
SYNE1-214ENST00000454018 PRB2P02812 416 aaPredicted RBP6.5□□□□□ -1.37
SYNE1-214ENST00000454018 NBEAP1P0C6P0 100 aa6.5□□□□□ -1.37
SYNE1-214ENST00000454018 FHITP49789 147 aa6.5□□□□□ -1.37
SYNE1-214ENST00000454018 DEFB131AP59861 70 aa6.5□□□□□ -1.37
SYNE1-214ENST00000454018 SUMO2P61956 95 aaKnown RBP6.5□□□□□ -1.37
SYNE1-214ENST00000454018 PSG9Q00887 426 aa6.5□□□□□ -1.37
SYNE1-214ENST00000454018 ZNF726P1Q15940 193 aa6.5□□□□□ -1.37
SYNE1-214ENST00000454018 SSX7Q7RTT5 188 aa6.5□□□□□ -1.37
SYNE1-214ENST00000454018 BLNKQ8WV28 456 aa6.5□□□□□ -1.37
SYNE1-214ENST00000454018 AAMDCQ9H7C9 122 aa6.5□□□□□ -1.37
SYNE1-214ENST00000454018 TMEM167BQ9NRX6 74 aa6.5□□□□□ -1.37
SYNE1-214ENST00000454018 UBQLN2Q9UHD9 624 aa6.5□□□□□ -1.37
SYNE1-214ENST00000454018 TRAV8-2A0A0B4J237 113 aa6.5□□□□□ -1.37
SYNE1-214ENST00000454018 K7EIL1 84 aa6.5□□□□□ -1.37
SYNE1-214ENST00000454018 GCHFRP30047 84 aa6.5□□□□□ -1.37
SYNE1-214ENST00000454018 ALKAL2Q6UX46 152 aa6.5□□□□□ -1.37
SYNE1-214ENST00000454018 LYPD1Q8N2G4 141 aa6.5□□□□□ -1.37
SYNE1-214ENST00000454018 MRPL53Q96EL3 112 aaKnown RBP6.5□□□□□ -1.37
SYNE1-214ENST00000454018 WFDC10AQ9H1F0 79 aa6.5□□□□□ -1.37
SYNE1-214ENST00000454018 SRD5A3Q9H8P0 318 aa6.5□□□□□ -1.37
SYNE1-214ENST00000454018 MEGF8Q7Z7M0 2845 aa6.49□□□□□ -1.37
SYNE1-214ENST00000454018 TEX46H3BTG2 121 aa6.49□□□□□ -1.37
SYNE1-214ENST00000454018 H3BTX0 84 aa6.49□□□□□ -1.37
SYNE1-214ENST00000454018 EIF3GO75821 320 aaKnown RBP eCLIP6.49□□□□□ -1.37
SYNE1-214ENST00000454018 NDUFB4O95168 129 aa6.49□□□□□ -1.37
SYNE1-214ENST00000454018 SNRPCP09234 159 aaKnown RBP6.49□□□□□ -1.37
SYNE1-214ENST00000454018 IGHV4-30-4P0DP06 118 aa6.49□□□□□ -1.37
SYNE1-214ENST00000454018 DEFA6Q01524 100 aa6.49□□□□□ -1.37
SYNE1-214ENST00000454018 FAM74A1Q5RGS3 127 aa6.49□□□□□ -1.37
SYNE1-214ENST00000454018 FOXI2Q6ZQN5 318 aa6.49□□□□□ -1.37
SYNE1-214ENST00000454018 APRG1Q8IVJ8 170 aa6.49□□□□□ -1.37
SYNE1-214ENST00000454018 IQCF2Q8IXL9 164 aa6.49□□□□□ -1.37
SYNE1-214ENST00000454018 DEFB125Q8N687 156 aa6.49□□□□□ -1.37
SYNE1-214ENST00000454018 RNF182Q8N6D2 247 aa6.49□□□□□ -1.37
SYNE1-214ENST00000454018 ZNF738Q8NE65 137 aa6.49□□□□□ -1.37
SYNE1-214ENST00000454018 SUN5Q8TC36 379 aa6.49□□□□□ -1.37
SYNE1-214ENST00000454018 MBD3L1Q8WWY6 194 aa6.49□□□□□ -1.37
SYNE1-214ENST00000454018 LINC00052Q96N35 136 aa6.49□□□□□ -1.37
SYNE1-214ENST00000454018 PRELID1Q9Y255 219 aa6.49□□□□□ -1.37
SYNE1-214ENST00000454018 MED14OSP0DP75 135 aa6.48□□□□□ -1.37
SYNE1-214ENST00000454018 FGF8P55075 233 aaPredicted RBP6.48□□□□□ -1.37
SYNE1-214ENST00000454018 PSG3Q16557 428 aa6.48□□□□□ -1.37
SYNE1-214ENST00000454018 MRAPQ8TCY5 172 aa6.48□□□□□ -1.37
SYNE1-214ENST00000454018 SFT2D1Q8WV19 159 aa6.48□□□□□ -1.37
SYNE1-214ENST00000454018 C20orf173Q96LM9 149 aa6.48□□□□□ -1.37
SYNE1-214ENST00000454018 Q9H3A6 140 aa6.48□□□□□ -1.37
SYNE1-214ENST00000454018 SAV1Q9H4B6 383 aaPredicted RBP6.48□□□□□ -1.37
SYNE1-214ENST00000454018 TUBA4BQ9H853 241 aa6.48□□□□□ -1.37
SYNE1-214ENST00000454018 ARL2-SNX15V9GYD0 113 aa6.48□□□□□ -1.37
SYNE1-214ENST00000454018 TRAV1-1A0A0B4J248 108 aa6.47□□□□□ -1.37
SYNE1-214ENST00000454018 ZNF705EA8MWA4 302 aaPredicted RBP6.47□□□□□ -1.37
SYNE1-214ENST00000454018 IFNA7P01567 189 aa6.47□□□□□ -1.37
SYNE1-214ENST00000454018 HBE1P02100 147 aa6.47□□□□□ -1.37
SYNE1-214ENST00000454018 HLA-DRB4P13762 266 aa6.47□□□□□ -1.37
SYNE1-214ENST00000454018 PPT1P50897 306 aa6.47□□□□□ -1.37
SYNE1-214ENST00000454018 RANP62826 216 aaKnown RBP6.47□□□□□ -1.37
SYNE1-214ENST00000454018 ACTL10Q5JWF8 245 aa6.47□□□□□ -1.37
SYNE1-214ENST00000454018 IGFL4Q6B9Z1 124 aa6.47□□□□□ -1.37
SYNE1-214ENST00000454018 EBLN2Q6P2I7 272 aa6.47□□□□□ -1.37
SYNE1-214ENST00000454018 TEX261Q6UWH6 196 aa6.47□□□□□ -1.37
SYNE1-214ENST00000454018 Q6ZWC4 215 aa6.47□□□□□ -1.37
SYNE1-214ENST00000454018 STHQ8IWL8 128 aa6.47□□□□□ -1.37
SYNE1-214ENST00000454018 RPUSD4Q96CM3 377 aaKnown RBP6.47□□□□□ -1.37
SYNE1-214ENST00000454018 OTORQ9NRC9 128 aa6.47□□□□□ -1.37
SYNE1-214ENST00000454018 HLA-DRB4X5D2U9 266 aa6.47□□□□□ -1.37
SYNE1-214ENST00000454018 A0A0J9YX75 114 aa6.46□□□□□ -1.37
SYNE1-214ENST00000454018 A0A1W2PRE2 83 aa6.46□□□□□ -1.37
SYNE1-214ENST00000454018 PRYO14603 147 aa6.46□□□□□ -1.37
SYNE1-214ENST00000454018 FRMD6-AS1P0C7T7 363 aa6.46□□□□□ -1.37
SYNE1-214ENST00000454018 HLA-DMBP28068 263 aa6.46□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms