RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 LOXL1Q08397 574 aaPredicted RBP5.84□□□□□ -1.47
SYNE1-213ENST00000448038 FAM19A2Q8N3H0 131 aa5.84□□□□□ -1.47
SYNE1-213ENST00000448038 C5orf56Q8N8D9 126 aa5.84□□□□□ -1.47
SYNE1-213ENST00000448038 CDSNQ15517 529 aa5.84□□□□□ -1.48
SYNE1-213ENST00000448038 ZNF414Q96IQ9 312 aa5.84□□□□□ -1.48
SYNE1-213ENST00000448038 MRPL27Q9P0M9 148 aaKnown RBP5.84□□□□□ -1.48
SYNE1-213ENST00000448038 TRBV24-1A0A075B6N3 115 aa5.83□□□□□ -1.48
SYNE1-213ENST00000448038 CGB3P0DN86 165 aa5.83□□□□□ -1.48
SYNE1-213ENST00000448038 CGB7P0DN87 165 aa5.83□□□□□ -1.48
SYNE1-213ENST00000448038 PKIAP61925 76 aa5.83□□□□□ -1.48
SYNE1-213ENST00000448038 ZNF415Q09FC8 603 aa5.83□□□□□ -1.48
SYNE1-213ENST00000448038 SPATA45Q537H7 98 aa5.83□□□□□ -1.48
SYNE1-213ENST00000448038 TMEM14CQ9P0S9 112 aa5.83□□□□□ -1.48
SYNE1-213ENST00000448038 C9JQL5 133 aa5.83□□□□□ -1.48
SYNE1-213ENST00000448038 ATP5LO75964 103 aa5.83□□□□□ -1.48
SYNE1-213ENST00000448038 IGLV2-23P01705 113 aa5.83□□□□□ -1.48
SYNE1-213ENST00000448038 EVI2AP22794 236 aa5.83□□□□□ -1.48
SYNE1-213ENST00000448038 C11orf71Q6IPW1 123 aa5.83□□□□□ -1.48
SYNE1-213ENST00000448038 ATOH7Q8N100 152 aa5.83□□□□□ -1.48
SYNE1-213ENST00000448038 LRRC75A-AS1Q8N1F1 130 aa5.83□□□□□ -1.48
SYNE1-213ENST00000448038 TMEM70Q9BUB7 260 aa5.83□□□□□ -1.48
SYNE1-213ENST00000448038 IGHV7-4-1A0A0J9YVY3 117 aa5.83□□□□□ -1.48
SYNE1-213ENST00000448038 GGTLC3B5MD39 225 aa5.83□□□□□ -1.48
SYNE1-213ENST00000448038 CXCL1P09341 107 aa5.83□□□□□ -1.48
SYNE1-213ENST00000448038 CHD8Q9HCK8 2581 aa5.83□□□□□ -1.48
SYNE1-213ENST00000448038 SERF1AO75920 110 aa5.83□□□□□ -1.48
SYNE1-213ENST00000448038 Q6ZPA2 131 aa5.83□□□□□ -1.48
SYNE1-213ENST00000448038 TMEM75Q8N9X5 138 aa5.83□□□□□ -1.48
SYNE1-213ENST00000448038 ZNF114Q8NC26 417 aa5.83□□□□□ -1.48
SYNE1-213ENST00000448038 NUP35Q8NFH5 326 aa5.83□□□□□ -1.48
SYNE1-213ENST00000448038 MIEN1Q9BRT3 115 aa5.83□□□□□ -1.48
SYNE1-213ENST00000448038 TRGV1A0A0A0MS02 117 aa5.83□□□□□ -1.48
SYNE1-213ENST00000448038 BCL6BQ8N143 479 aaPredicted RBP5.83□□□□□ -1.48
SYNE1-213ENST00000448038 LY6G5BQ8NDX9 201 aa5.83□□□□□ -1.48
SYNE1-213ENST00000448038 TMEM160Q9NX00 188 aa5.83□□□□□ -1.48
SYNE1-213ENST00000448038 TSSC4Q9Y5U2 329 aaPredicted RBP5.83□□□□□ -1.48
SYNE1-213ENST00000448038 SONP18583 2426 aaKnown RBP5.82□□□□□ -1.48
SYNE1-213ENST00000448038 IGLV11-55A0A075B6I3 123 aa5.82□□□□□ -1.48
SYNE1-213ENST00000448038 FOSL1P15407 271 aa5.82□□□□□ -1.48
SYNE1-213ENST00000448038 DEFB136Q30KP8 78 aa5.82□□□□□ -1.48
SYNE1-213ENST00000448038 HIST2H2BCQ6DN03 193 aa5.82□□□□□ -1.48
SYNE1-213ENST00000448038 I3L2K1 104 aa5.82□□□□□ -1.48
SYNE1-213ENST00000448038 K7EIM0 57 aa5.82□□□□□ -1.48
SYNE1-213ENST00000448038 LGALS1P09382 135 aaKnown RBP5.82□□□□□ -1.48
SYNE1-213ENST00000448038 HOXD3P31249 432 aaPredicted RBP5.82□□□□□ -1.48
SYNE1-213ENST00000448038 SPINK13Q1W4C9 94 aa5.82□□□□□ -1.48
SYNE1-213ENST00000448038 VWC2Q2TAL6 325 aa5.82□□□□□ -1.48
SYNE1-213ENST00000448038 PRR31Q5SQ13 230 aa5.82□□□□□ -1.48
SYNE1-213ENST00000448038 LINC00574Q9H8X3 128 aa5.82□□□□□ -1.48
SYNE1-213ENST00000448038 KIAA1549Q9HCM3 1950 aa5.82□□□□□ -1.48
SYNE1-213ENST00000448038 FSTL3O95633 263 aa5.82□□□□□ -1.48
SYNE1-213ENST00000448038 SUMO2P61956 95 aaKnown RBP5.82□□□□□ -1.48
SYNE1-213ENST00000448038 FOXE3Q13461 319 aa5.82□□□□□ -1.48
SYNE1-213ENST00000448038 ST6GALNAC6Q969X2 333 aa5.82□□□□□ -1.48
SYNE1-213ENST00000448038 FXYD5Q96DB9 178 aa5.82□□□□□ -1.48
SYNE1-213ENST00000448038 XCL2Q9UBD3 114 aa5.82□□□□□ -1.48
SYNE1-213ENST00000448038 LSM4Q9Y4Z0 139 aaKnown RBP5.82□□□□□ -1.48
SYNE1-213ENST00000448038 KMT2EQ8IZD2 1858 aa5.82□□□□□ -1.48
SYNE1-213ENST00000448038 HTTP42858 3142 aa5.82□□□□□ -1.48
SYNE1-213ENST00000448038 LGALS3P17931 250 aaKnown RBP5.82□□□□□ -1.48
SYNE1-213ENST00000448038 ADCYAP1P18509 176 aa5.82□□□□□ -1.48
SYNE1-213ENST00000448038 TMEM170BQ5T4T1 132 aa5.82□□□□□ -1.48
SYNE1-213ENST00000448038 OR4C5Q8NGB2 326 aa5.82□□□□□ -1.48
SYNE1-213ENST00000448038 NXT2Q9NPJ8 142 aaKnown RBP5.82□□□□□ -1.48
SYNE1-213ENST00000448038 IGHV3-73A0A0B4J1V6 119 aa5.82□□□□□ -1.48
SYNE1-213ENST00000448038 UTF1Q5T230 341 aa5.82□□□□□ -1.48
SYNE1-213ENST00000448038 SMIM12Q96EX1 92 aa5.82□□□□□ -1.48
SYNE1-213ENST00000448038 C8orf49Q96NF6 230 aa5.82□□□□□ -1.48
SYNE1-213ENST00000448038 CCL24O00175 119 aa5.81□□□□□ -1.48
SYNE1-213ENST00000448038 LINC00614P0C842 121 aa5.81□□□□□ -1.48
SYNE1-213ENST00000448038 PSMB2P49721 201 aa5.81□□□□□ -1.48
SYNE1-213ENST00000448038 FOXC2Q99958 501 aa5.81□□□□□ -1.48
SYNE1-213ENST00000448038 COLCA2A8K830 154 aa5.81□□□□□ -1.48
SYNE1-213ENST00000448038 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.81□□□□□ -1.48
SYNE1-213ENST00000448038 NDUFA3O95167 84 aa5.81□□□□□ -1.48
SYNE1-213ENST00000448038 C2orf88Q9BSF0 95 aa5.81□□□□□ -1.48
SYNE1-213ENST00000448038 SMPXQ9UHP9 88 aa5.81□□□□□ -1.48
SYNE1-213ENST00000448038 HIST1H2BKO60814 126 aa5.81□□□□□ -1.48
SYNE1-213ENST00000448038 NCR2O95944 276 aa5.81□□□□□ -1.48
SYNE1-213ENST00000448038 HIST1H2BJP06899 126 aa5.81□□□□□ -1.48
SYNE1-213ENST00000448038 HIST1H2BOP23527 126 aa5.81□□□□□ -1.48
SYNE1-213ENST00000448038 HIST1H2BBP33778 126 aa5.81□□□□□ -1.48
SYNE1-213ENST00000448038 HIST1H2BDP58876 126 aa5.81□□□□□ -1.48
SYNE1-213ENST00000448038 HIST1H2BCP62807 126 aa5.81□□□□□ -1.48
SYNE1-213ENST00000448038 SRSF1Q07955 248 aaKnown RBP eCLIP5.81□□□□□ -1.48
SYNE1-213ENST00000448038 HIST2H2BEQ16778 126 aa5.81□□□□□ -1.48
SYNE1-213ENST00000448038 HIST2H2BFQ5QNW6 126 aaPredicted RBP5.81□□□□□ -1.48
SYNE1-213ENST00000448038 WFDC11Q8NEX6 87 aa5.81□□□□□ -1.48
SYNE1-213ENST00000448038 HIST1H2BHQ93079 126 aa5.81□□□□□ -1.48
SYNE1-213ENST00000448038 HIST1H2BNQ99877 126 aa5.81□□□□□ -1.48
SYNE1-213ENST00000448038 HIST1H2BMQ99879 126 aa5.81□□□□□ -1.48
SYNE1-213ENST00000448038 HIVEP3Q5T1R4 2406 aa5.81□□□□□ -1.48
SYNE1-213ENST00000448038 TEX22C9J3V5 150 aa5.81□□□□□ -1.48
SYNE1-213ENST00000448038 E7EUB6 86 aa5.81□□□□□ -1.48
SYNE1-213ENST00000448038 CRXO43186 299 aaPredicted RBP5.81□□□□□ -1.48
SYNE1-213ENST00000448038 PROP1O75360 226 aa5.81□□□□□ -1.48
SYNE1-213ENST00000448038 IGHV3-53P01767 116 aa5.81□□□□□ -1.48
SYNE1-213ENST00000448038 IGKV1-17P01599 117 aa5.8□□□□□ -1.48
SYNE1-213ENST00000448038 HOXA5P20719 270 aa5.8□□□□□ -1.48
SYNE1-213ENST00000448038 RASL11AQ6T310 242 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 113.4 ms