RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 SCN3BQ9NY72 215 aa1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 KLK5Q9Y337 293 aaPredicted RBP1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 LRP4O75096 1905 aa1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 KCPQ6ZWJ8 1503 aa1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 TLN1Q9Y490 2541 aaKnown RBP1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 PIK3C2BO00750 1634 aa1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 TRBV7-6A0A0J9YX20 115 aa1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 C7orf71A4D174 169 aa1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 IGHV3-53P01767 116 aa1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 TCRAP04437 139 aa1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 CCSMST1Q4G0I0 132 aa1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 MEIG1Q5JSS6 88 aa1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 LCN15Q6UWW0 184 aa1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 C2orf91Q6ZV80 131 aa1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 GTSCR1Q86UQ5 136 aa1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 OR10P1Q8NGE3 313 aa1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 TMEM191AQ9H0A3 160 aa1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 DSCAML1Q8TD84 2053 aa1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 IFT172Q9UG01 1749 aa1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 ZNF670-ZNF695F2Z2N8 137 aa1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 APODP05090 189 aa1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 PCBD1P61457 104 aa1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 ZNF79Q15937 498 aa1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 TMEM14EPQ6UXP3 125 aa1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 IZUMO2Q6UXV1 221 aa1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 MCEEQ96PE7 176 aa1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 CST9LQ9H4G1 147 aa1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 TICRRQ7Z2Z1 1910 aa1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 TRAV27A0A087WT01 109 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 MDFIC2A0A1B0GVS7 189 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 H3BQ85 93 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 P0DMU3 169 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 FAM231AP0DMU4 169 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 FAM231CP0DMU5 169 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 KLRD1Q13241 179 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 ZNF660Q6AZW8 331 aaPredicted RBP1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 Q6ZS52 159 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 RNF182Q8N6D2 247 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 CLDND2Q8NHS1 167 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 NAA38Q9BRA0 125 aaKnown RBP1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 A0A0D9SEW6 157 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 C19orf71A6NCJ1 209 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 M0R129 80 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 SDCBPO00560 298 aaPredicted RBP1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 LYRM1O43325 122 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 TIMM17BO60830 172 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 NCR2O95944 276 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 LHBP01229 141 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 RBP4P02753 201 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 ZNF93P35789 620 aaPredicted RBP1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 RPL28P46779 137 aaKnown RBP1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 TPPP2P59282 170 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 SUPT4H1P63272 117 aaKnown RBP1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 KISS1Q15726 138 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 CLLU1Q5K131 121 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 C16orf47Q6ZP98 133 aaPredicted RBP1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 C3orf22Q8N5N4 141 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 RAB37Q96AX2 223 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 MGAM2Q2M2H8 2515 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 DICER1Q9UPY3 1922 aaKnown RBP1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 TMEM235A6NFC5 223 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 C3orf84H3BNL1 204 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 H3BPC8 53 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 WISP3O95389 354 aaPredicted RBP1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 IFNA17P01571 189 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 GZMBP10144 247 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 XCL1P47992 114 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 ZNF117Q03924 483 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 SLC35E3Q7Z769 313 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 OR10AC1Q8NH08 325 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 SMCR5Q8TEV8 140 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 AKAP12Q02952 1782 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 WNK3Q9BYP7 1800 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 CCDC141Q6ZP82 1450 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 RALGAPA2Q2PPJ7 1873 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 IGKV1-9A0A0C4DH69 117 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 FAM236AA0A1B0GUQ0 79 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 FAM236BA0A1B0GV22 79 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 UQCRQO14949 82 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 IGKV1-16P04430 117 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 FOXA3P55318 350 aaPredicted RBP1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 PKIAP61925 76 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 GFI1BQ5VTD9 330 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 TEX261Q6UWH6 196 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 ACBD7Q8N6N7 88 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 APCDD1LQ8NCL9 501 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 CHCHD1Q96BP2 118 aaKnown RBP1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 DUSP21Q9H596 190 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 COMMD3Q9UBI1 195 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 ZFP30Q9Y2G7 519 aa1.55□□□□□ -2.16
CCDC88A-208ENST00000444458 KIAA1551Q9HCM1 1747 aa1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 A0A087WYN8 130 aa1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 ZNF861PO60384 105 aa1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 PYYP10082 97 aa1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 DYNLT1P63172 113 aa1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 MRPS36P82909 103 aaKnown RBP1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 FAM216BQ8N7L0 139 aa1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 OR4C12Q96R67 309 aa1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 BCL2L10Q9HD36 194 aa1.54□□□□□ -2.16
CCDC88A-208ENST00000444458 NHP2Q9NX24 153 aaKnown RBP1.54□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 132.1 ms