RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 RBMY1A1P0DJD3 496 aaKnown RBP13.51□□□□□ -0.25
SHH-203ENST00000435425 RBMY1CP0DJD4 496 aa13.51□□□□□ -0.25
SHH-203ENST00000435425 MIFP14174 115 aa13.51□□□□□ -0.25
SHH-203ENST00000435425 TAS2R45P59539 299 aa13.51□□□□□ -0.25
SHH-203ENST00000435425 ICAM4Q14773 271 aa13.51□□□□□ -0.25
SHH-203ENST00000435425 RBMY1FQ15415 496 aaKnown RBP13.51□□□□□ -0.25
SHH-203ENST00000435425 KHDC3LQ587J8 217 aa13.51□□□□□ -0.25
SHH-203ENST00000435425 Q8NAQ8 132 aa13.51□□□□□ -0.25
SHH-203ENST00000435425 ZNF503Q96F45 646 aa13.51□□□□□ -0.25
SHH-203ENST00000435425 PSMG3Q9BT73 122 aaPredicted RBP13.51□□□□□ -0.25
SHH-203ENST00000435425 AAMDCQ9H7C9 122 aa13.51□□□□□ -0.25
SHH-203ENST00000435425 GOLT1BQ9Y3E0 138 aa13.51□□□□□ -0.25
SHH-203ENST00000435425 TRAV12-2A0A075B6T6 113 aa13.5□□□□□ -0.25
SHH-203ENST00000435425 CXorf65A6NEN9 183 aa13.5□□□□□ -0.25
SHH-203ENST00000435425 BOLA2-SMG1P6H3BVE0 249 aa13.5□□□□□ -0.25
SHH-203ENST00000435425 UBE2L3P68036 154 aaKnown RBP13.5□□□□□ -0.25
SHH-203ENST00000435425 PDE6HQ13956 83 aa13.5□□□□□ -0.25
SHH-203ENST00000435425 PHYHIPLQ96FC7 376 aa13.5□□□□□ -0.25
SHH-203ENST00000435425 C11orf68Q9H3H3 251 aaKnown RBP13.5□□□□□ -0.25
SHH-203ENST00000435425 AMBPP02760 352 aa13.49□□□□□ -0.25
SHH-203ENST00000435425 ZNF705AQ6ZN79 300 aaPredicted RBP13.49□□□□□ -0.25
SHH-203ENST00000435425 BAP18Q8IXM2 172 aa13.49□□□□□ -0.25
SHH-203ENST00000435425 C1orf158Q8N1D5 194 aa13.49□□□□□ -0.25
SHH-203ENST00000435425 OR11H4Q8NGC9 324 aa13.49□□□□□ -0.25
SHH-203ENST00000435425 OR2G3Q8NGZ4 309 aa13.49□□□□□ -0.25
SHH-203ENST00000435425 IGF2BP2-AS1Q96M15 143 aa13.49□□□□□ -0.25
SHH-203ENST00000435425 TMEM208Q9BTX3 173 aa13.49□□□□□ -0.25
SHH-203ENST00000435425 PRELID1Q9Y255 219 aa13.49□□□□□ -0.25
SHH-203ENST00000435425 CDC34P49427 236 aaPredicted RBP13.48□□□□□ -0.25
SHH-203ENST00000435425 NANOS2P60321 138 aaKnown RBP13.48□□□□□ -0.25
SHH-203ENST00000435425 RANP62826 216 aaKnown RBP13.48□□□□□ -0.25
SHH-203ENST00000435425 Q6ZNX1 250 aa13.48□□□□□ -0.25
SHH-203ENST00000435425 C11orf45Q8TAV5 145 aa13.48□□□□□ -0.25
SHH-203ENST00000435425 GNPNAT1Q96EK6 184 aaPredicted RBP13.48□□□□□ -0.25
SHH-203ENST00000435425 hCG_2014768A0A024R1R8 64 aa13.47□□□□□ -0.25
SHH-203ENST00000435425 J3KRW8 73 aa13.47□□□□□ -0.25
SHH-203ENST00000435425 TAAR5O14804 337 aa13.47□□□□□ -0.25
SHH-203ENST00000435425 CRXO43186 299 aaPredicted RBP13.47□□□□□ -0.25
SHH-203ENST00000435425 INSP01308 110 aa13.47□□□□□ -0.25
SHH-203ENST00000435425 SERF2P84101 59 aa13.47□□□□□ -0.25
SHH-203ENST00000435425 ERCC8Q13216 396 aa13.47□□□□□ -0.25
SHH-203ENST00000435425 MRPL53Q96EL3 112 aaKnown RBP13.47□□□□□ -0.25
SHH-203ENST00000435425 DNAH7Q8WXX0 4024 aa13.46□□□□□ -0.25
SHH-203ENST00000435425 JTBO76095 146 aa13.46□□□□□ -0.25
SHH-203ENST00000435425 MBP02144 154 aa13.46□□□□□ -0.25
SHH-203ENST00000435425 EMP1P54849 157 aa13.46□□□□□ -0.25
SHH-203ENST00000435425 RPP25LQ8N5L8 163 aaKnown RBP13.46□□□□□ -0.25
SHH-203ENST00000435425 Q9H3A6 140 aa13.46□□□□□ -0.25
SHH-203ENST00000435425 CYTL1Q9NRR1 136 aa13.46□□□□□ -0.25
SHH-203ENST00000435425 IGKV2-40A0A087WW87 121 aaPredicted RBP13.45□□□□□ -0.26
SHH-203ENST00000435425 NPIPB6E9PJ23 425 aa13.45□□□□□ -0.26
SHH-203ENST00000435425 IGKV2D-40P01614 121 aaPredicted RBP13.45□□□□□ -0.26
SHH-203ENST00000435425 HBE1P02100 147 aa13.45□□□□□ -0.26
SHH-203ENST00000435425 CT45A10P0DMU9 189 aa13.45□□□□□ -0.26
SHH-203ENST00000435425 CDKN1BP46527 198 aa13.45□□□□□ -0.26
SHH-203ENST00000435425 PQLC2Q6ZP29 291 aa13.45□□□□□ -0.26
SHH-203ENST00000435425 KCNRGQ8N5I3 272 aa13.45□□□□□ -0.26
SHH-203ENST00000435425 RAB24Q969Q5 203 aa13.45□□□□□ -0.26
SHH-203ENST00000435425 ST6GAL2Q96JF0 529 aa13.45□□□□□ -0.26
SHH-203ENST00000435425 NEU1Q99519 415 aa13.45□□□□□ -0.26
SHH-203ENST00000435425 ARPC5LQ9BPX5 153 aa13.45□□□□□ -0.26
SHH-203ENST00000435425 SMIM9A6NGZ8 99 aa13.44□□□□□ -0.26
SHH-203ENST00000435425 HMSDA8MTL9 139 aa13.44□□□□□ -0.26
SHH-203ENST00000435425 PRM2P04554 102 aa13.44□□□□□ -0.26
SHH-203ENST00000435425 ARL14EPLP0DKL9 152 aa13.44□□□□□ -0.26
SHH-203ENST00000435425 KIR3DS1Q14943 382 aa13.44□□□□□ -0.26
SHH-203ENST00000435425 LINC01587Q99440 93 aa13.44□□□□□ -0.26
SHH-203ENST00000435425 ACTR3CQ9C0K3 210 aaPredicted RBP13.44□□□□□ -0.26
SHH-203ENST00000435425 ZNF705GA8MUZ8 300 aaPredicted RBP13.43□□□□□ -0.26
SHH-203ENST00000435425 TSPOP30536 169 aa13.43□□□□□ -0.26
SHH-203ENST00000435425 CSN1S1P47710 185 aa13.43□□□□□ -0.26
SHH-203ENST00000435425 ZNF345Q14585 488 aa13.43□□□□□ -0.26
SHH-203ENST00000435425 RRN3P1Q2M238 152 aa13.43□□□□□ -0.26
SHH-203ENST00000435425 HYLS1Q96M11 299 aa13.43□□□□□ -0.26
SHH-203ENST00000435425 AGPAT4-IT1Q9H0P7 198 aa13.43□□□□□ -0.26
SHH-203ENST00000435425 CELA1Q9UNI1 258 aa13.43□□□□□ -0.26
SHH-203ENST00000435425 A0A0D9SG52 128 aa13.42□□□□□ -0.26
SHH-203ENST00000435425 LOC102723971A0A1B0GUV8 181 aa13.42□□□□□ -0.26
SHH-203ENST00000435425 PGPA6NDG6 321 aa13.42□□□□□ -0.26
SHH-203ENST00000435425 STAG3L2P0CL84 134 aa13.42□□□□□ -0.26
SHH-203ENST00000435425 STAG3L3P0CL85 134 aa13.42□□□□□ -0.26
SHH-203ENST00000435425 HTN1P15515 57 aa13.42□□□□□ -0.26
SHH-203ENST00000435425 LEPP41159 167 aa13.42□□□□□ -0.26
SHH-203ENST00000435425 AKR1C8PQ5T2L2 129 aa13.42□□□□□ -0.26
SHH-203ENST00000435425 ZNF767PQ75MW2 155 aa13.42□□□□□ -0.26
SHH-203ENST00000435425 IQCF2Q8IXL9 164 aa13.42□□□□□ -0.26
SHH-203ENST00000435425 LYPD1Q8N2G4 141 aa13.42□□□□□ -0.26
SHH-203ENST00000435425 PHLDA1Q8WV24 401 aaPredicted RBP13.42□□□□□ -0.26
SHH-203ENST00000435425 VGLL1Q99990 258 aa13.42□□□□□ -0.26
SHH-203ENST00000435425 RPH3ALQ9UNE2 315 aa13.42□□□□□ -0.26
SHH-203ENST00000435425 KANTRA0A1W2PQU2 76 aa13.41□□□□□ -0.26
SHH-203ENST00000435425 SSX7Q7RTT5 188 aa13.41□□□□□ -0.26
SHH-203ENST00000435425 LINC00477Q96M19 166 aa13.41□□□□□ -0.26
SHH-203ENST00000435425 TMEM189A5PLL7 270 aa13.4□□□□□ -0.26
SHH-203ENST00000435425 NUPR2A6NF83 97 aa13.4□□□□□ -0.26
SHH-203ENST00000435425 BCL2L11O43521 198 aa13.4□□□□□ -0.26
SHH-203ENST00000435425 GCHFRP30047 84 aa13.4□□□□□ -0.26
SHH-203ENST00000435425 TMEM78Q5T7P6 136 aa13.4□□□□□ -0.26
SHH-203ENST00000435425 GFI1BQ5VTD9 330 aa13.4□□□□□ -0.26
SHH-203ENST00000435425 CEMP1Q6PRD7 247 aaPredicted RBP13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms