RNA–Protein interactions for RNA: ENST00000431039.1

TTC28-202, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 3

Gene TTC28, Length 905 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-202ENST00000431039 FAM74A7A6NL05 159 aa12.33□□□□□ -0.44
TTC28-202ENST00000431039 SOCS3O14543 225 aa12.33□□□□□ -0.44
TTC28-202ENST00000431039 PAGE4O60829 102 aa12.33□□□□□ -0.44
TTC28-202ENST00000431039 BCL2P10415 239 aa12.33□□□□□ -0.44
TTC28-202ENST00000431039 RANP62826 216 aaKnown RBP12.33□□□□□ -0.44
TTC28-202ENST00000431039 DCANP1Q8TF63 244 aa12.33□□□□□ -0.44
TTC28-202ENST00000431039 FAM210AQ96ND0 272 aa12.33□□□□□ -0.44
TTC28-202ENST00000431039 SLC50A1Q9BRV3 221 aa12.33□□□□□ -0.44
TTC28-202ENST00000431039 NKX6-2Q9C056 277 aaPredicted RBP12.33□□□□□ -0.44
TTC28-202ENST00000431039 ZNF331Q9NQX6 463 aaPredicted RBP12.33□□□□□ -0.44
TTC28-202ENST00000431039 C19orf73Q9NVV2 129 aa12.33□□□□□ -0.44
TTC28-202ENST00000431039 CLEC5AQ9NY25 188 aa12.33□□□□□ -0.44
TTC28-202ENST00000431039 YTHDF2Q9Y5A9 579 aaKnown RBP12.33□□□□□ -0.44
TTC28-202ENST00000431039 ALMS1Q8TCU4 4167 aa12.33□□□□□ -0.44
TTC28-202ENST00000431039 IGKV3-7A0A075B6H7 116 aa12.32□□□□□ -0.44
TTC28-202ENST00000431039 RBFOX3A6NFN3 312 aa12.32□□□□□ -0.44
TTC28-202ENST00000431039 K7EQG2 157 aa12.32□□□□□ -0.44
TTC28-202ENST00000431039 DNASE2O00115 360 aaPredicted RBP12.32□□□□□ -0.44
TTC28-202ENST00000431039 SLC17A3O00476 420 aa12.32□□□□□ -0.44
TTC28-202ENST00000431039 UBE2G2P60604 165 aa12.32□□□□□ -0.44
TTC28-202ENST00000431039 GBGT1Q8N5D6 347 aa12.32□□□□□ -0.44
TTC28-202ENST00000431039 SPAG8Q99932 426 aaPredicted RBP12.32□□□□□ -0.44
TTC28-202ENST00000431039 TXNDC17Q9BRA2 123 aa12.32□□□□□ -0.44
TTC28-202ENST00000431039 Q9H3A6 140 aa12.32□□□□□ -0.44
TTC28-202ENST00000431039 OTORQ9NRC9 128 aa12.32□□□□□ -0.44
TTC28-202ENST00000431039 VAX2Q9UIW0 290 aa12.32□□□□□ -0.44
TTC28-202ENST00000431039 TRAV8-2A0A0B4J237 113 aa12.31□□□□□ -0.44
TTC28-202ENST00000431039 LOC102723971A0A1B0GUV8 181 aa12.31□□□□□ -0.44
TTC28-202ENST00000431039 RAB19A4D1S5 217 aa12.31□□□□□ -0.44
TTC28-202ENST00000431039 ISLRO14498 428 aa12.31□□□□□ -0.44
TTC28-202ENST00000431039 HAGHQ16775 308 aa12.31□□□□□ -0.44
TTC28-202ENST00000431039 ZNF506Q5JVG8 444 aa12.31□□□□□ -0.44
TTC28-202ENST00000431039 CST9LP1Q5W188 147 aa12.31□□□□□ -0.44
TTC28-202ENST00000431039 LCN12Q6JVE5 192 aa12.31□□□□□ -0.44
TTC28-202ENST00000431039 C16orf92Q96LL3 132 aa12.31□□□□□ -0.44
TTC28-202ENST00000431039 SPATA25Q9BR10 227 aa12.31□□□□□ -0.44
TTC28-202ENST00000431039 PRELID1Q9Y255 219 aa12.31□□□□□ -0.44
TTC28-202ENST00000431039 PGPA6NDG6 321 aa12.3□□□□□ -0.44
TTC28-202ENST00000431039 A8MZ25 164 aa12.3□□□□□ -0.44
TTC28-202ENST00000431039 GGTLC3B5MD39 225 aa12.3□□□□□ -0.44
TTC28-202ENST00000431039 NDUFS6O75380 124 aaKnown RBP12.3□□□□□ -0.44
TTC28-202ENST00000431039 ID1P41134 155 aa12.3□□□□□ -0.44
TTC28-202ENST00000431039 SUMO1P63165 101 aaKnown RBP12.3□□□□□ -0.44
TTC28-202ENST00000431039 WFDC3Q8IUB2 231 aa12.3□□□□□ -0.44
TTC28-202ENST00000431039 CCDC28AQ8IWP9 274 aa12.3□□□□□ -0.44
TTC28-202ENST00000431039 ARL6IP6Q8N6S5 226 aa12.3□□□□□ -0.44
TTC28-202ENST00000431039 AAMDCQ9H7C9 122 aa12.3□□□□□ -0.44
TTC28-202ENST00000431039 IZUMO1RA6ND01 250 aa12.29□□□□□ -0.44
TTC28-202ENST00000431039 OR4C46A6NHA9 309 aa12.29□□□□□ -0.44
TTC28-202ENST00000431039 C11orf94C9JXX5 98 aa12.29□□□□□ -0.44
TTC28-202ENST00000431039 ATP5G3P48201 142 aa12.29□□□□□ -0.44
TTC28-202ENST00000431039 TFPI2P48307 235 aa12.29□□□□□ -0.44
TTC28-202ENST00000431039 TOR2AQ5JU69 321 aa12.29□□□□□ -0.44
TTC28-202ENST00000431039 EXOC3-AS1Q8N2X6 119 aa12.29□□□□□ -0.44
TTC28-202ENST00000431039 MRPL53Q96EL3 112 aaKnown RBP12.29□□□□□ -0.44
TTC28-202ENST00000431039 RARRES2Q99969 163 aa12.29□□□□□ -0.44
TTC28-202ENST00000431039 TCEAL7Q9BRU2 100 aa12.29□□□□□ -0.44
TTC28-202ENST00000431039 EIF5A2Q9GZV4 153 aaKnown RBP12.29□□□□□ -0.44
TTC28-202ENST00000431039 SMDT1Q9H4I9 107 aa12.29□□□□□ -0.44
TTC28-202ENST00000431039 MEF2BQ02080 365 aaPredicted RBP12.28□□□□□ -0.44
TTC28-202ENST00000431039 ICAM4Q14773 271 aa12.28□□□□□ -0.44
TTC28-202ENST00000431039 PEA15Q15121 130 aa12.28□□□□□ -0.44
TTC28-202ENST00000431039 PSG3Q16557 428 aa12.28□□□□□ -0.44
TTC28-202ENST00000431039 C5orf17Q8NAS9 161 aa12.28□□□□□ -0.44
TTC28-202ENST00000431039 RXFP4Q8TDU9 374 aa12.28□□□□□ -0.44
TTC28-202ENST00000431039 CD81P60033 236 aa12.27□□□□□ -0.45
TTC28-202ENST00000431039 SNRPD3P62318 126 aaKnown RBP12.27□□□□□ -0.45
TTC28-202ENST00000431039 GUCA2BQ16661 112 aa12.27□□□□□ -0.45
TTC28-202ENST00000431039 IGFL4Q6B9Z1 124 aa12.27□□□□□ -0.45
TTC28-202ENST00000431039 COMMD7Q86VX2 200 aa12.27□□□□□ -0.45
TTC28-202ENST00000431039 EIF4E3Q8N5X7 224 aaKnown RBP12.27□□□□□ -0.45
TTC28-202ENST00000431039 CMTM2Q8TAZ6 248 aa12.27□□□□□ -0.45
TTC28-202ENST00000431039 TUBA4BQ9H853 241 aa12.27□□□□□ -0.45
TTC28-202ENST00000431039 RETNQ9HD89 108 aa12.27□□□□□ -0.45
TTC28-202ENST00000431039 EPDR1Q9UM22 224 aa12.27□□□□□ -0.45
TTC28-202ENST00000431039 PDE6DO43924 150 aa12.26□□□□□ -0.45
TTC28-202ENST00000431039 SLC25A5P05141 298 aaKnown RBP12.26□□□□□ -0.45
TTC28-202ENST00000431039 HLA-DMBP28068 263 aa12.26□□□□□ -0.45
TTC28-202ENST00000431039 CSN1S1P47710 185 aa12.26□□□□□ -0.45
TTC28-202ENST00000431039 CMC4P56277 68 aaPredicted RBP12.26□□□□□ -0.45
TTC28-202ENST00000431039 NDUFA5Q16718 116 aa12.26□□□□□ -0.45
TTC28-202ENST00000431039 UQCC3Q6UW78 93 aa12.26□□□□□ -0.45
TTC28-202ENST00000431039 GTSCR1Q86UQ5 136 aa12.26□□□□□ -0.45
TTC28-202ENST00000431039 FAM24BQ8N5W8 94 aa12.26□□□□□ -0.45
TTC28-202ENST00000431039 C20orf173Q96LM9 149 aa12.26□□□□□ -0.45
TTC28-202ENST00000431039 F6UZH7 168 aa12.25□□□□□ -0.45
TTC28-202ENST00000431039 M0R3E3 92 aa12.25□□□□□ -0.45
TTC28-202ENST00000431039 SRSF3P84103 164 aaKnown RBP12.25□□□□□ -0.45
TTC28-202ENST00000431039 RNF182Q8N6D2 247 aa12.25□□□□□ -0.45
TTC28-202ENST00000431039 HIST1H2BAQ96A08 127 aa12.25□□□□□ -0.45
TTC28-202ENST00000431039 C11orf52Q96A22 123 aa12.25□□□□□ -0.45
TTC28-202ENST00000431039 LINC00052Q96N35 136 aa12.25□□□□□ -0.45
TTC28-202ENST00000431039 FAM110AQ9BQ89 295 aa12.25□□□□□ -0.45
TTC28-202ENST00000431039 TMEM250H0YL14 139 aa12.24□□□□□ -0.45
TTC28-202ENST00000431039 ZNF688P0C7X2 276 aa12.24□□□□□ -0.45
TTC28-202ENST00000431039 RPUSD4Q96CM3 377 aaKnown RBP12.24□□□□□ -0.45
TTC28-202ENST00000431039 SERTM2A0A1B0GWG4 89 aa12.23□□□□□ -0.45
TTC28-202ENST00000431039 ZNF705FA8MVS1 300 aaPredicted RBP12.23□□□□□ -0.45
TTC28-202ENST00000431039 DIRC3C9JPN6 131 aa12.23□□□□□ -0.45
TTC28-202ENST00000431039 C9JQL5 133 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms