RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 ZNF471Q9BX82 626 aaPredicted RBP9.1□□□□□ -0.95
USP40-205ENST00000430158 ZNF705FA8MVS1 300 aaPredicted RBP9.09□□□□□ -0.95
USP40-205ENST00000430158 PRAC2D3DTV9 90 aa9.09□□□□□ -0.95
USP40-205ENST00000430158 TAS2R45P59539 299 aa9.09□□□□□ -0.95
USP40-205ENST00000430158 KHDC3LQ587J8 217 aa9.09□□□□□ -0.95
USP40-205ENST00000430158 LCE3BQ5TA77 95 aa9.09□□□□□ -0.95
USP40-205ENST00000430158 AMTNQ6UX39 209 aa9.09□□□□□ -0.95
USP40-205ENST00000430158 PQLC2Q6ZP29 291 aa9.09□□□□□ -0.95
USP40-205ENST00000430158 PHYHIPLQ96FC7 376 aa9.09□□□□□ -0.95
USP40-205ENST00000430158 A0A1W2PPV4 95 aa9.08□□□□□ -0.96
USP40-205ENST00000430158 UBE2CO00762 179 aa9.08□□□□□ -0.96
USP40-205ENST00000430158 HMGB3O15347 200 aaKnown RBP9.08□□□□□ -0.96
USP40-205ENST00000430158 OR7C2O60412 319 aa9.08□□□□□ -0.96
USP40-205ENST00000430158 PFDN1O60925 122 aa9.08□□□□□ -0.96
USP40-205ENST00000430158 ARL14EPLP0DKL9 152 aa9.08□□□□□ -0.96
USP40-205ENST00000430158 PRB4P10163 310 aaPredicted RBP9.08□□□□□ -0.96
USP40-205ENST00000430158 C4BPBP20851 252 aa9.08□□□□□ -0.96
USP40-205ENST00000430158 NKX2-5P52952 324 aaPredicted RBP9.08□□□□□ -0.96
USP40-205ENST00000430158 CSNK1G2-AS1Q8NCQ2 148 aa9.08□□□□□ -0.96
USP40-205ENST00000430158 BLNKQ8WV28 456 aa9.08□□□□□ -0.96
USP40-205ENST00000430158 RPUSD4Q96CM3 377 aaKnown RBP9.08□□□□□ -0.96
USP40-205ENST00000430158 MRPL53Q96EL3 112 aaKnown RBP9.08□□□□□ -0.96
USP40-205ENST00000430158 ACTR3CQ9C0K3 210 aaPredicted RBP9.08□□□□□ -0.96
USP40-205ENST00000430158 CSTL1Q9H114 145 aa9.08□□□□□ -0.96
USP40-205ENST00000430158 CLEC5AQ9NY25 188 aa9.08□□□□□ -0.96
USP40-205ENST00000430158 CTXND1A0A1B0GTU2 59 aa9.07□□□□□ -0.96
USP40-205ENST00000430158 M0R3E3 92 aa9.07□□□□□ -0.96
USP40-205ENST00000430158 ZNF705DP0CH99 300 aaPredicted RBP9.07□□□□□ -0.96
USP40-205ENST00000430158 ZNF705BP0CI00 300 aaPredicted RBP9.07□□□□□ -0.96
USP40-205ENST00000430158 TPT1P13693 172 aaKnown RBP9.07□□□□□ -0.96
USP40-205ENST00000430158 GCHFRP30047 84 aa9.07□□□□□ -0.96
USP40-205ENST00000430158 FHITP49789 147 aa9.07□□□□□ -0.96
USP40-205ENST00000430158 APOC4P55056 127 aa9.07□□□□□ -0.96
USP40-205ENST00000430158 EIF5AP63241 154 aaKnown RBP9.07□□□□□ -0.96
USP40-205ENST00000430158 PSG9Q00887 426 aa9.07□□□□□ -0.96
USP40-205ENST00000430158 AKR1C8PQ5T2L2 129 aa9.07□□□□□ -0.96
USP40-205ENST00000430158 Q6ZWC4 215 aa9.07□□□□□ -0.96
USP40-205ENST00000430158 SLC51BQ86UW2 128 aa9.07□□□□□ -0.96
USP40-205ENST00000430158 STHQ8IWL8 128 aa9.07□□□□□ -0.96
USP40-205ENST00000430158 EXOC3-AS1Q8N2X6 119 aa9.07□□□□□ -0.96
USP40-205ENST00000430158 ZNF738Q8NE65 137 aa9.07□□□□□ -0.96
USP40-205ENST00000430158 OR8A1Q8NGG7 326 aa9.07□□□□□ -0.96
USP40-205ENST00000430158 LRRC20Q8TCA0 184 aa9.07□□□□□ -0.96
USP40-205ENST00000430158 TMED6Q8WW62 240 aa9.07□□□□□ -0.96
USP40-205ENST00000430158 OVOL2Q9BRP0 275 aa9.07□□□□□ -0.96
USP40-205ENST00000430158 RETNQ9HD89 108 aa9.07□□□□□ -0.96
USP40-205ENST00000430158 CNN1P51911 297 aaKnown RBP9.06□□□□□ -0.96
USP40-205ENST00000430158 UBE2L3P68036 154 aaKnown RBP9.06□□□□□ -0.96
USP40-205ENST00000430158 MORN3Q6PF18 240 aaPredicted RBP9.06□□□□□ -0.96
USP40-205ENST00000430158 LYPD1Q8N2G4 141 aa9.06□□□□□ -0.96
USP40-205ENST00000430158 MBD3L1Q8WWY6 194 aa9.06□□□□□ -0.96
USP40-205ENST00000430158 RNF183Q96D59 192 aa9.06□□□□□ -0.96
USP40-205ENST00000430158 PRELID1Q9Y255 219 aa9.06□□□□□ -0.96
USP40-205ENST00000430158 UMAD1C9J7I0 102 aa9.05□□□□□ -0.96
USP40-205ENST00000430158 ICAM4Q14773 271 aa9.05□□□□□ -0.96
USP40-205ENST00000430158 EBLN2Q6P2I7 272 aa9.05□□□□□ -0.96
USP40-205ENST00000430158 SPATA25Q9BR10 227 aa9.05□□□□□ -0.96
USP40-205ENST00000430158 Q9H3A6 140 aa9.05□□□□□ -0.96
USP40-205ENST00000430158 TP53TG1Q9Y2A0 90 aa9.05□□□□□ -0.96
USP40-205ENST00000430158 NPIPB6E9PJ23 425 aa9.04□□□□□ -0.96
USP40-205ENST00000430158 DUSP14O95147 198 aaKnown RBP9.04□□□□□ -0.96
USP40-205ENST00000430158 CXorf1O96002 111 aa9.04□□□□□ -0.96
USP40-205ENST00000430158 RANP62826 216 aaKnown RBP9.04□□□□□ -0.96
USP40-205ENST00000430158 DEFB135Q30KP9 77 aa9.04□□□□□ -0.96
USP40-205ENST00000430158 DPPA3Q6W0C5 159 aa9.04□□□□□ -0.96
USP40-205ENST00000430158 SLC35B3Q9H1N7 401 aa9.04□□□□□ -0.96
USP40-205ENST00000430158 TMPRSS5Q9H3S3 457 aa9.04□□□□□ -0.96
USP40-205ENST00000430158 CRXO43186 299 aaPredicted RBP9.03□□□□□ -0.96
USP40-205ENST00000430158 CA1P00915 261 aaPredicted RBP9.03□□□□□ -0.96
USP40-205ENST00000430158 IGKV3-20P01619 116 aa9.03□□□□□ -0.96
USP40-205ENST00000430158 SULT1A2P50226 295 aa9.03□□□□□ -0.96
USP40-205ENST00000430158 FGF8P55075 233 aaPredicted RBP9.03□□□□□ -0.96
USP40-205ENST00000430158 HIST1H1AQ02539 215 aaPredicted RBP9.03□□□□□ -0.96
USP40-205ENST00000430158 OR4B1Q8NGF8 309 aa9.03□□□□□ -0.96
USP40-205ENST00000430158 FAM19A4Q96LR4 140 aa9.03□□□□□ -0.96
USP40-205ENST00000430158 RCHY1Q96PM5 261 aa9.03□□□□□ -0.96
USP40-205ENST00000430158 OTORQ9NRC9 128 aa9.03□□□□□ -0.96
USP40-205ENST00000430158 U3KQK5 164 aa9.03□□□□□ -0.96
USP40-205ENST00000430158 TRAV1-1A0A0B4J248 108 aa9.02□□□□□ -0.97
USP40-205ENST00000430158 MAP1LC3B2A6NCE7 125 aa9.02□□□□□ -0.97
USP40-205ENST00000430158 SPRY2O43597 315 aa9.02□□□□□ -0.97
USP40-205ENST00000430158 CT45A10P0DMU9 189 aa9.02□□□□□ -0.97
USP40-205ENST00000430158 FXYD7P58549 80 aa9.02□□□□□ -0.97
USP40-205ENST00000430158 C9orf47Q6ZRZ4 202 aa9.02□□□□□ -0.97
USP40-205ENST00000430158 ARL6IP6Q8N6S5 226 aa9.02□□□□□ -0.97
USP40-205ENST00000430158 FAM213BQ8TBF2 198 aa9.02□□□□□ -0.97
USP40-205ENST00000430158 MAP1LC3BQ9GZQ8 125 aa9.02□□□□□ -0.97
USP40-205ENST00000430158 AGPAT4-IT1Q9H0P7 198 aa9.02□□□□□ -0.97
USP40-205ENST00000430158 AAMDCQ9H7C9 122 aa9.02□□□□□ -0.97
USP40-205ENST00000430158 ZMAT4Q9H898 229 aa9.02□□□□□ -0.97
USP40-205ENST00000430158 TMEM167BQ9NRX6 74 aa9.02□□□□□ -0.97
USP40-205ENST00000430158 XCL2Q9UBD3 114 aa9.02□□□□□ -0.97
USP40-205ENST00000430158 YTHDF2Q9Y5A9 579 aaKnown RBP9.02□□□□□ -0.97
USP40-205ENST00000430158 PGPA6NDG6 321 aa9.01□□□□□ -0.97
USP40-205ENST00000430158 ZNF705EA8MWA4 302 aaPredicted RBP9.01□□□□□ -0.97
USP40-205ENST00000430158 GGTLC3B5MD39 225 aa9.01□□□□□ -0.97
USP40-205ENST00000430158 DIRC3C9JPN6 131 aa9.01□□□□□ -0.97
USP40-205ENST00000430158 BOLA2-SMG1P6H3BVE0 249 aa9.01□□□□□ -0.97
USP40-205ENST00000430158 RAB5CP51148 216 aa9.01□□□□□ -0.97
USP40-205ENST00000430158 ERCC8Q13216 396 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms