RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 STAG3L4Q8TBR4 150 aa1.88□□□□□ -2.11
USP40-204ENST00000427947 WFDC5Q8TCV5 224 aa1.88□□□□□ -2.11
USP40-204ENST00000427947 MAFIPQ8WZ33 124 aa1.88□□□□□ -2.11
USP40-204ENST00000427947 TMEM106AQ96A25 262 aa1.88□□□□□ -2.11
USP40-204ENST00000427947 PLEKHB2Q96CS7 222 aa1.88□□□□□ -2.11
USP40-204ENST00000427947 DNAJC30Q96LL9 226 aa1.88□□□□□ -2.11
USP40-204ENST00000427947 FAM107BQ9H098 131 aa1.88□□□□□ -2.11
USP40-204ENST00000427947 HHLA3Q9XRX5 114 aa1.88□□□□□ -2.11
USP40-204ENST00000427947 ASB4Q9Y574 426 aa1.88□□□□□ -2.11
USP40-204ENST00000427947 ZNF638Q14966 1978 aaKnown RBP1.88□□□□□ -2.11
USP40-204ENST00000427947 SCN10AQ9Y5Y9 1956 aa1.88□□□□□ -2.11
USP40-204ENST00000427947 PXDNQ92626 1479 aa1.88□□□□□ -2.11
USP40-204ENST00000427947 SACSQ9NZJ4 4579 aa1.88□□□□□ -2.11
USP40-204ENST00000427947 E9PCH4 1651 aa1.87□□□□□ -2.11
USP40-204ENST00000427947 H7C2G1 150 aa1.87□□□□□ -2.11
USP40-204ENST00000427947 DSCAMO60469 2012 aa1.87□□□□□ -2.11
USP40-204ENST00000427947 KRTAP5-8O75690 187 aa1.87□□□□□ -2.11
USP40-204ENST00000427947 FOXF1Q12946 379 aa1.87□□□□□ -2.11
USP40-204ENST00000427947 NAIPQ13075 1403 aa1.87□□□□□ -2.11
USP40-204ENST00000427947 HCP5Q6MZN7 132 aa1.87□□□□□ -2.11
USP40-204ENST00000427947 LYZL1Q6UWQ5 148 aa1.87□□□□□ -2.11
USP40-204ENST00000427947 DPPA3Q6W0C5 159 aa1.87□□□□□ -2.11
USP40-204ENST00000427947 TCF24Q7RTU0 167 aa1.87□□□□□ -2.11
USP40-204ENST00000427947 XRN1Q8IZH2 1706 aaKnown RBP1.87□□□□□ -2.11
USP40-204ENST00000427947 OR4X2Q8NGF9 303 aa1.87□□□□□ -2.11
USP40-204ENST00000427947 OR4C16Q8NGL9 310 aa1.87□□□□□ -2.11
USP40-204ENST00000427947 PPTC7Q8NI37 304 aa1.87□□□□□ -2.11
USP40-204ENST00000427947 MRPS24Q96EL2 167 aaKnown RBP1.87□□□□□ -2.11
USP40-204ENST00000427947 HIST1H2BLQ99880 126 aa1.87□□□□□ -2.11
USP40-204ENST00000427947 TUBA4BQ9H853 241 aa1.87□□□□□ -2.11
USP40-204ENST00000427947 KIF13BQ9NQT8 1826 aa1.87□□□□□ -2.11
USP40-204ENST00000427947 NEXMIFQ5QGS0 1516 aa1.86□□□□□ -2.11
USP40-204ENST00000427947 CACNA1SQ13698 1873 aa1.86□□□□□ -2.11
USP40-204ENST00000427947 LAMA1P25391 3075 aa1.86□□□□□ -2.11
USP40-204ENST00000427947 HECTD4Q9Y4D8 3996 aa1.86□□□□□ -2.11
USP40-204ENST00000427947 TRAV7A0A075B6U4 112 aa1.86□□□□□ -2.11
USP40-204ENST00000427947 A0A1W2PNM2 257 aa1.86□□□□□ -2.11
USP40-204ENST00000427947 PRORSD1PA6NEY8 169 aa1.86□□□□□ -2.11
USP40-204ENST00000427947 FNDC10F2Z333 226 aa1.86□□□□□ -2.11
USP40-204ENST00000427947 ARPC5O15511 151 aa1.86□□□□□ -2.11
USP40-204ENST00000427947 OR2T1O43869 369 aa1.86□□□□□ -2.11
USP40-204ENST00000427947 NFYAP23511 347 aaPredicted RBP1.86□□□□□ -2.11
USP40-204ENST00000427947 KRTAP12-3P60328 96 aa1.86□□□□□ -2.11
USP40-204ENST00000427947 ERHP84090 104 aaKnown RBP1.86□□□□□ -2.11
USP40-204ENST00000427947 FKBP1CQ5VVH2 108 aa1.86□□□□□ -2.11
USP40-204ENST00000427947 RPP25LQ8N5L8 163 aaKnown RBP1.86□□□□□ -2.11
USP40-204ENST00000427947 SIGLECL1Q8N7X8 197 aa1.86□□□□□ -2.11
USP40-204ENST00000427947 WFDC11Q8NEX6 87 aa1.86□□□□□ -2.11
USP40-204ENST00000427947 OR5A1Q8NGJ0 315 aa1.86□□□□□ -2.11
USP40-204ENST00000427947 DCANP1Q8TF63 244 aa1.86□□□□□ -2.11
USP40-204ENST00000427947 PKMYT1Q99640 499 aa1.86□□□□□ -2.11
USP40-204ENST00000427947 DOHHQ9BU89 302 aa1.86□□□□□ -2.11
USP40-204ENST00000427947 GSKIPQ9P0R6 139 aa1.86□□□□□ -2.11
USP40-204ENST00000427947 OR52A1Q9UKL2 312 aa1.86□□□□□ -2.11
USP40-204ENST00000427947 FAM215AQ9Y5M1 114 aa1.86□□□□□ -2.11
USP40-204ENST00000427947 SIPA1L1O43166 1804 aa1.86□□□□□ -2.11
USP40-204ENST00000427947 PRR14LQ5THK1 2151 aa1.86□□□□□ -2.11
USP40-204ENST00000427947 LAMC1P11047 1609 aa1.85□□□□□ -2.11
USP40-204ENST00000427947 CLTCL1P53675 1640 aa1.85□□□□□ -2.11
USP40-204ENST00000427947 IQGAP3Q86VI3 1631 aa1.85□□□□□ -2.11
USP40-204ENST00000427947 A0A1B0GVG6 124 aa1.85□□□□□ -2.11
USP40-204ENST00000427947 ODAMA1E959 279 aa1.85□□□□□ -2.11
USP40-204ENST00000427947 ARL5CA6NH57 179 aa1.85□□□□□ -2.11
USP40-204ENST00000427947 TMEM256-PLSCR3K7ERE1 68 aa1.85□□□□□ -2.11
USP40-204ENST00000427947 DHFRP00374 187 aa1.85□□□□□ -2.11
USP40-204ENST00000427947 TRGC2P03986 189 aa1.85□□□□□ -2.11
USP40-204ENST00000427947 IGKV1-16P04430 117 aa1.85□□□□□ -2.11
USP40-204ENST00000427947 OR10J4P0C629 311 aa1.85□□□□□ -2.11
USP40-204ENST00000427947 SCGB1A1P11684 91 aa1.85□□□□□ -2.11
USP40-204ENST00000427947 TMEM258P61165 79 aa1.85□□□□□ -2.11
USP40-204ENST00000427947 UBE2BP63146 152 aa1.85□□□□□ -2.11
USP40-204ENST00000427947 S100A12P80511 92 aa1.85□□□□□ -2.11
USP40-204ENST00000427947 RHOGP84095 191 aa1.85□□□□□ -2.11
USP40-204ENST00000427947 PABPC1L2AQ5JQF8 200 aa1.85□□□□□ -2.11
USP40-204ENST00000427947 FAM27BQ5VT28 67 aa1.85□□□□□ -2.11
USP40-204ENST00000427947 TOMM20LQ6UXN7 152 aa1.85□□□□□ -2.11
USP40-204ENST00000427947 ANGPTL5Q86XS5 388 aa1.85□□□□□ -2.11
USP40-204ENST00000427947 TMEM86AQ8N2M4 240 aa1.85□□□□□ -2.11
USP40-204ENST00000427947 SLAMF6Q96DU3 332 aa1.85□□□□□ -2.11
USP40-204ENST00000427947 BORCS8Q96FH0 119 aa1.85□□□□□ -2.11
USP40-204ENST00000427947 CCDC115Q96NT0 180 aa1.85□□□□□ -2.11
USP40-204ENST00000427947 GPX7Q96SL4 187 aaPredicted RBP1.85□□□□□ -2.11
USP40-204ENST00000427947 LRTM1Q9HBL6 345 aa1.85□□□□□ -2.11
USP40-204ENST00000427947 LAMTOR3Q9UHA4 124 aa1.85□□□□□ -2.11
USP40-204ENST00000427947 TRAPPC2LQ9UL33 140 aa1.85□□□□□ -2.11
USP40-204ENST00000427947 NALCNQ8IZF0 1738 aa1.85□□□□□ -2.11
USP40-204ENST00000427947 ARHGEF10O15013 1369 aa1.85□□□□□ -2.11
USP40-204ENST00000427947 ZNF407Q9C0G0 2248 aa1.85□□□□□ -2.11
USP40-204ENST00000427947 DOCK3Q8IZD9 2030 aa1.84□□□□□ -2.11
USP40-204ENST00000427947 KIF1BO60333 1816 aa1.84□□□□□ -2.11
USP40-204ENST00000427947 TECPR2O15040 1411 aa1.84□□□□□ -2.11
USP40-204ENST00000427947 ANK2Q01484 3957 aa1.84□□□□□ -2.11
USP40-204ENST00000427947 IGKV1-9A0A0C4DH69 117 aa1.84□□□□□ -2.11
USP40-204ENST00000427947 E7EQL1 145 aa1.84□□□□□ -2.11
USP40-204ENST00000427947 GGCTO75223 188 aaKnown RBP1.84□□□□□ -2.11
USP40-204ENST00000427947 KRTAP2-3P0C7H8 128 aa1.84□□□□□ -2.11
USP40-204ENST00000427947 TRGC1P0CF51 173 aa1.84□□□□□ -2.11
USP40-204ENST00000427947 CRYGAP11844 174 aa1.84□□□□□ -2.11
USP40-204ENST00000427947 RPL7P18124 248 aaKnown RBP1.84□□□□□ -2.11
USP40-204ENST00000427947 INSL3P51460 131 aa1.84□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms