RNA–Protein interactions for RNA: ENST00000425537.1

HMGB4-201, Transcript of high mobility group box 4, humanhuman

TSL 1 (best)

Gene HMGB4, Length 630 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-201ENST00000425537 UBE2E2Q96LR5 201 aa7.28□□□□□ -1.24
HMGB4-201ENST00000425537 LINC00479Q96M42 142 aa7.28□□□□□ -1.24
HMGB4-201ENST00000425537 MLST8Q9BVC4 326 aa7.28□□□□□ -1.24
HMGB4-201ENST00000425537 GFRA4Q9GZZ7 299 aa7.28□□□□□ -1.24
HMGB4-201ENST00000425537 RNASE7Q9H1E1 156 aaKnown RBP7.28□□□□□ -1.24
HMGB4-201ENST00000425537 RPP21Q9H633 154 aaKnown RBP7.28□□□□□ -1.24
HMGB4-201ENST00000425537 ZNF702PQ9H963 129 aa7.28□□□□□ -1.24
HMGB4-201ENST00000425537 DAZ1Q9NQZ3 744 aaKnown RBP7.28□□□□□ -1.24
HMGB4-201ENST00000425537 NAT8BQ9UHF3 227 aa7.28□□□□□ -1.24
HMGB4-201ENST00000425537 IZUMO1RA6ND01 250 aa7.27□□□□□ -1.25
HMGB4-201ENST00000425537 SLC17A3O00476 420 aa7.27□□□□□ -1.25
HMGB4-201ENST00000425537 LGALS1P09382 135 aaKnown RBP7.27□□□□□ -1.25
HMGB4-201ENST00000425537 Q6ZS46 218 aa7.27□□□□□ -1.25
HMGB4-201ENST00000425537 RNF152Q8N8N0 203 aa7.27□□□□□ -1.25
HMGB4-201ENST00000425537 NUDT10Q8NFP7 164 aa7.27□□□□□ -1.25
HMGB4-201ENST00000425537 TSKUQ8WUA8 353 aa7.27□□□□□ -1.25
HMGB4-201ENST00000425537 NUDT11Q96G61 164 aa7.27□□□□□ -1.25
HMGB4-201ENST00000425537 C17orf77Q96MU5 243 aa7.27□□□□□ -1.25
HMGB4-201ENST00000425537 KLK15Q9H2R5 256 aa7.27□□□□□ -1.25
HMGB4-201ENST00000425537 TRAPPC1Q9Y5R8 145 aa7.27□□□□□ -1.25
HMGB4-201ENST00000425537 ZNF469Q96JG9 3925 aaPredicted RBP7.27□□□□□ -1.25
HMGB4-201ENST00000425537 IGHV7-4-1A0A0J9YVY3 117 aa7.26□□□□□ -1.25
HMGB4-201ENST00000425537 C5orf52A6NGY3 159 aa7.26□□□□□ -1.25
HMGB4-201ENST00000425537 CHEK1O14757 476 aa7.26□□□□□ -1.25
HMGB4-201ENST00000425537 HLA-DQA1P01909 254 aa7.26□□□□□ -1.25
HMGB4-201ENST00000425537 S100A8P05109 93 aa7.26□□□□□ -1.25
HMGB4-201ENST00000425537 FOSL1P15407 271 aa7.26□□□□□ -1.25
HMGB4-201ENST00000425537 RPS20P60866 119 aaKnown RBP7.26□□□□□ -1.25
HMGB4-201ENST00000425537 ACTL10Q5JWF8 245 aa7.26□□□□□ -1.25
HMGB4-201ENST00000425537 Q6AWC8 147 aa7.26□□□□□ -1.25
HMGB4-201ENST00000425537 LCN12Q6JVE5 192 aa7.26□□□□□ -1.25
HMGB4-201ENST00000425537 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.26□□□□□ -1.25
HMGB4-201ENST00000425537 ATP5L2Q7Z4Y8 100 aa7.26□□□□□ -1.25
HMGB4-201ENST00000425537 NHLRC2Q8NBF2 726 aa7.26□□□□□ -1.25
HMGB4-201ENST00000425537 ZNF418Q8TF45 676 aaPredicted RBP7.26□□□□□ -1.25
HMGB4-201ENST00000425537 GLMPQ8WWB7 406 aa7.26□□□□□ -1.25
HMGB4-201ENST00000425537 WFDC12Q8WWY7 111 aa7.26□□□□□ -1.25
HMGB4-201ENST00000425537 JMJD8Q96S16 334 aa7.26□□□□□ -1.25
HMGB4-201ENST00000425537 GNB1LQ9BYB4 327 aa7.26□□□□□ -1.25
HMGB4-201ENST00000425537 SMAD5-AS1Q9Y6J3 95 aa7.26□□□□□ -1.25
HMGB4-201ENST00000425537 TEP1Q99973 2627 aaKnown RBP7.25□□□□□ -1.25
HMGB4-201ENST00000425537 IGHV3OR16-8A0A075B7F1 116 aa7.25□□□□□ -1.25
HMGB4-201ENST00000425537 C19orf71A6NCJ1 209 aa7.25□□□□□ -1.25
HMGB4-201ENST00000425537 M0QZ24 198 aa7.25□□□□□ -1.25
HMGB4-201ENST00000425537 LGALS9O00182 355 aa7.25□□□□□ -1.25
HMGB4-201ENST00000425537 UBE2CO00762 179 aa7.25□□□□□ -1.25
HMGB4-201ENST00000425537 ZNF207O43670 478 aaKnown RBP7.25□□□□□ -1.25
HMGB4-201ENST00000425537 HIST1H2BKO60814 126 aa7.25□□□□□ -1.25
HMGB4-201ENST00000425537 IGLV2-11P01706 119 aa7.25□□□□□ -1.25
HMGB4-201ENST00000425537 HIST1H2BJP06899 126 aa7.25□□□□□ -1.25
HMGB4-201ENST00000425537 TRGC1P0CF51 173 aa7.25□□□□□ -1.25
HMGB4-201ENST00000425537 HIST1H2BOP23527 126 aa7.25□□□□□ -1.25
HMGB4-201ENST00000425537 HIST1H2BBP33778 126 aa7.25□□□□□ -1.25
HMGB4-201ENST00000425537 ID1P41134 155 aa7.25□□□□□ -1.25
HMGB4-201ENST00000425537 NDUFA6P56556 154 aa7.25□□□□□ -1.25
HMGB4-201ENST00000425537 HIST1H2BDP58876 126 aa7.25□□□□□ -1.25
HMGB4-201ENST00000425537 SNRPEP62304 92 aaKnown RBP7.25□□□□□ -1.25
HMGB4-201ENST00000425537 HIST1H2BCP62807 126 aa7.25□□□□□ -1.25
HMGB4-201ENST00000425537 SRSF2Q01130 221 aaKnown RBP7.25□□□□□ -1.25
HMGB4-201ENST00000425537 HIST2H2BEQ16778 126 aa7.25□□□□□ -1.25
HMGB4-201ENST00000425537 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.25□□□□□ -1.25
HMGB4-201ENST00000425537 TMEM78Q5T7P6 136 aa7.25□□□□□ -1.25
HMGB4-201ENST00000425537 C8orf86Q6ZUL3 223 aa7.25□□□□□ -1.25
HMGB4-201ENST00000425537 COX8CQ7Z4L0 72 aa7.25□□□□□ -1.25
HMGB4-201ENST00000425537 MYOZ3Q8TDC0 251 aa7.25□□□□□ -1.25
HMGB4-201ENST00000425537 FRZBQ92765 325 aa7.25□□□□□ -1.25
HMGB4-201ENST00000425537 HIST1H2BHQ93079 126 aa7.25□□□□□ -1.25
HMGB4-201ENST00000425537 BORCS7Q96B45 105 aa7.25□□□□□ -1.25
HMGB4-201ENST00000425537 C16orf92Q96LL3 132 aa7.25□□□□□ -1.25
HMGB4-201ENST00000425537 HIST1H2BNQ99877 126 aa7.25□□□□□ -1.25
HMGB4-201ENST00000425537 HIST1H2BMQ99879 126 aa7.25□□□□□ -1.25
HMGB4-201ENST00000425537 SMPXQ9UHP9 88 aa7.25□□□□□ -1.25
HMGB4-201ENST00000425537 ZANQ9Y493 2812 aa7.25□□□□□ -1.25
HMGB4-201ENST00000425537 A0A1B0GW15 77 aa7.24□□□□□ -1.25
HMGB4-201ENST00000425537 DNAJC9-AS1A6NH13 148 aa7.24□□□□□ -1.25
HMGB4-201ENST00000425537 NPIPB6E9PJ23 425 aa7.24□□□□□ -1.25
HMGB4-201ENST00000425537 M0R3E3 92 aa7.24□□□□□ -1.25
HMGB4-201ENST00000425537 OVOL1O14753 267 aa7.24□□□□□ -1.25
HMGB4-201ENST00000425537 TRBV12-3P01733 135 aa7.24□□□□□ -1.25
HMGB4-201ENST00000425537 FABP9Q0Z7S8 132 aa7.24□□□□□ -1.25
HMGB4-201ENST00000425537 TMEM95Q3KNT9 176 aa7.24□□□□□ -1.25
HMGB4-201ENST00000425537 SMUG1Q53HV7 270 aa7.24□□□□□ -1.25
HMGB4-201ENST00000425537 FAM162BQ5T6X4 162 aa7.24□□□□□ -1.25
HMGB4-201ENST00000425537 RBPMS2Q6ZRY4 209 aaKnown RBP7.24□□□□□ -1.25
HMGB4-201ENST00000425537 REC114Q7Z4M0 266 aa7.24□□□□□ -1.25
HMGB4-201ENST00000425537 WIPF2Q8TF74 440 aaPredicted RBP7.24□□□□□ -1.25
HMGB4-201ENST00000425537 SGK494Q96LW2 274 aa7.24□□□□□ -1.25
HMGB4-201ENST00000425537 RHPN1-AS1Q9BWJ2 59 aa7.24□□□□□ -1.25
HMGB4-201ENST00000425537 NRN1Q9NPD7 142 aa7.24□□□□□ -1.25
HMGB4-201ENST00000425537 LENEPQ9Y5L5 61 aa7.24□□□□□ -1.25
HMGB4-201ENST00000425537 CSPG4Q6UVK1 2322 aa7.24□□□□□ -1.25
HMGB4-201ENST00000425537 TRAV8-1A0A0A6YYK1 113 aa7.23□□□□□ -1.25
HMGB4-201ENST00000425537 IGHV3-66A0A0C4DH42 116 aa7.23□□□□□ -1.25
HMGB4-201ENST00000425537 A8MWP6 167 aa7.23□□□□□ -1.25
HMGB4-201ENST00000425537 APOHP02749 345 aaPredicted RBP7.23□□□□□ -1.25
HMGB4-201ENST00000425537 RPLP1P05386 114 aaKnown RBP7.23□□□□□ -1.25
HMGB4-201ENST00000425537 HOXA5P20719 270 aa7.23□□□□□ -1.25
HMGB4-201ENST00000425537 S100A2P29034 98 aa7.23□□□□□ -1.25
HMGB4-201ENST00000425537 CDX1P47902 265 aaPredicted RBP7.23□□□□□ -1.25
HMGB4-201ENST00000425537 AKR1D1P51857 326 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms