RNA–Protein interactions for RNA: ENST00000414861.6

RIF1-202, Transcript of replication timing regulatory factor 1, humanhuman

TSL 1 (best)

Gene RIF1, Length 2,534 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-202ENST00000414861 RPUSD4Q96CM3 377 aaKnown RBP7.26□□□□□ -1.25
RIF1-202ENST00000414861 NKX6-2Q9C056 277 aaPredicted RBP7.26□□□□□ -1.25
RIF1-202ENST00000414861 SMDT1Q9H4I9 107 aa7.26□□□□□ -1.25
RIF1-202ENST00000414861 EPDR1Q9UM22 224 aa7.26□□□□□ -1.25
RIF1-202ENST00000414861 PRAC2D3DTV9 90 aa7.25□□□□□ -1.25
RIF1-202ENST00000414861 F6UZH7 168 aa7.25□□□□□ -1.25
RIF1-202ENST00000414861 PEX7O00628 323 aa7.25□□□□□ -1.25
RIF1-202ENST00000414861 TSPAN4O14817 238 aa7.25□□□□□ -1.25
RIF1-202ENST00000414861 IGLV1-51P01701 117 aa7.25□□□□□ -1.25
RIF1-202ENST00000414861 RBPMS2Q6ZRY4 209 aaKnown RBP7.25□□□□□ -1.25
RIF1-202ENST00000414861 C2CD4CQ8TF44 421 aa7.25□□□□□ -1.25
RIF1-202ENST00000414861 SGK494Q96LW2 274 aa7.25□□□□□ -1.25
RIF1-202ENST00000414861 PARLQ9H300 379 aa7.25□□□□□ -1.25
RIF1-202ENST00000414861 IGKV2-40A0A087WW87 121 aaPredicted RBP7.25□□□□□ -1.25
RIF1-202ENST00000414861 TRAV8-1A0A0A6YYK1 113 aa7.25□□□□□ -1.25
RIF1-202ENST00000414861 TRAV34A0A0B4J273 112 aa7.25□□□□□ -1.25
RIF1-202ENST00000414861 DNASE2O00115 360 aaPredicted RBP7.25□□□□□ -1.25
RIF1-202ENST00000414861 ISLRO14498 428 aa7.25□□□□□ -1.25
RIF1-202ENST00000414861 IGKV2D-40P01614 121 aaPredicted RBP7.25□□□□□ -1.25
RIF1-202ENST00000414861 TCRAP04437 139 aa7.25□□□□□ -1.25
RIF1-202ENST00000414861 ZNF688P0C7X2 276 aa7.25□□□□□ -1.25
RIF1-202ENST00000414861 GOLT1AQ6ZVE7 132 aa7.25□□□□□ -1.25
RIF1-202ENST00000414861 CMTM2Q8TAZ6 248 aa7.25□□□□□ -1.25
RIF1-202ENST00000414861 TRBV20OR9-2A0A075B6H5 130 aa7.24□□□□□ -1.25
RIF1-202ENST00000414861 DIRC3C9JPN6 131 aa7.24□□□□□ -1.25
RIF1-202ENST00000414861 ZNF674Q2M3X9 581 aa7.24□□□□□ -1.25
RIF1-202ENST00000414861 LCN12Q6JVE5 192 aa7.24□□□□□ -1.25
RIF1-202ENST00000414861 ATG101Q9BSB4 218 aa7.24□□□□□ -1.25
RIF1-202ENST00000414861 ZNF256Q9Y2P7 627 aaPredicted RBP7.24□□□□□ -1.25
RIF1-202ENST00000414861 CD33P20138 364 aa7.24□□□□□ -1.25
RIF1-202ENST00000414861 RPL35P42766 123 aaKnown RBP7.24□□□□□ -1.25
RIF1-202ENST00000414861 PSG3Q16557 428 aa7.24□□□□□ -1.25
RIF1-202ENST00000414861 HIST1H2BAQ96A08 127 aa7.24□□□□□ -1.25
RIF1-202ENST00000414861 ASCL2Q99929 193 aa7.24□□□□□ -1.25
RIF1-202ENST00000414861 F6UB75 175 aa7.23□□□□□ -1.25
RIF1-202ENST00000414861 NDUFS6O75380 124 aaKnown RBP7.23□□□□□ -1.25
RIF1-202ENST00000414861 AKR1C3P42330 323 aa7.23□□□□□ -1.25
RIF1-202ENST00000414861 GUCA2BQ16661 112 aa7.23□□□□□ -1.25
RIF1-202ENST00000414861 PSMG4Q5JS54 123 aa7.23□□□□□ -1.25
RIF1-202ENST00000414861 SOHLH1Q5JUK2 328 aa7.23□□□□□ -1.25
RIF1-202ENST00000414861 ZNF738Q8NE65 137 aa7.23□□□□□ -1.25
RIF1-202ENST00000414861 WFDC9Q8NEX5 89 aa7.23□□□□□ -1.25
RIF1-202ENST00000414861 SMIM7Q9BQ49 75 aa7.23□□□□□ -1.25
RIF1-202ENST00000414861 TCEAL7Q9BRU2 100 aa7.23□□□□□ -1.25
RIF1-202ENST00000414861 PGPEP1LA6NFU8 196 aa7.23□□□□□ -1.25
RIF1-202ENST00000414861 F8W036 122 aa7.23□□□□□ -1.25
RIF1-202ENST00000414861 IGLV2-11P01706 119 aa7.23□□□□□ -1.25
RIF1-202ENST00000414861 ZNF705DP0CH99 300 aaPredicted RBP7.23□□□□□ -1.25
RIF1-202ENST00000414861 ZNF705BP0CI00 300 aaPredicted RBP7.23□□□□□ -1.25
RIF1-202ENST00000414861 PAFAH1B2P68402 229 aa7.23□□□□□ -1.25
RIF1-202ENST00000414861 MRPL53Q96EL3 112 aaKnown RBP7.23□□□□□ -1.25
RIF1-202ENST00000414861 SPAG8Q99932 426 aaPredicted RBP7.23□□□□□ -1.25
RIF1-202ENST00000414861 VGLL1Q99990 258 aa7.23□□□□□ -1.25
RIF1-202ENST00000414861 PRELID1Q9Y255 219 aa7.23□□□□□ -1.25
RIF1-202ENST00000414861 TRAV25A0A0B4J276 109 aa7.22□□□□□ -1.25
RIF1-202ENST00000414861 IGLL1P15814 213 aa7.22□□□□□ -1.25
RIF1-202ENST00000414861 CSN1S1P47710 185 aa7.22□□□□□ -1.25
RIF1-202ENST00000414861 TRAV2A0A0B4J234 112 aa7.22□□□□□ -1.25
RIF1-202ENST00000414861 ZNF727A8MUV8 499 aa7.22□□□□□ -1.25
RIF1-202ENST00000414861 CNN1P51911 297 aaKnown RBP7.22□□□□□ -1.25
RIF1-202ENST00000414861 SNRPD3P62318 126 aaKnown RBP7.22□□□□□ -1.25
RIF1-202ENST00000414861 ERCC8Q13216 396 aa7.22□□□□□ -1.25
RIF1-202ENST00000414861 ZNF124Q15973 351 aa7.22□□□□□ -1.25
RIF1-202ENST00000414861 C10orf91Q5T1B1 145 aa7.22□□□□□ -1.25
RIF1-202ENST00000414861 C9orf66Q5T8R8 295 aa7.22□□□□□ -1.25
RIF1-202ENST00000414861 GDF5OSQ5U4N7 250 aa7.22□□□□□ -1.25
RIF1-202ENST00000414861 SAMD13Q5VXD3 122 aa7.22□□□□□ -1.25
RIF1-202ENST00000414861 Q8TAT8 98 aa7.22□□□□□ -1.25
RIF1-202ENST00000414861 IGF2BP2-AS1Q96M15 143 aa7.22□□□□□ -1.25
RIF1-202ENST00000414861 SEC11CQ9BY50 192 aa7.22□□□□□ -1.25
RIF1-202ENST00000414861 OR4C46A6NHA9 309 aa7.21□□□□□ -1.26
RIF1-202ENST00000414861 ID1P41134 155 aa7.21□□□□□ -1.26
RIF1-202ENST00000414861 ODF3L2Q3SX64 289 aa7.21□□□□□ -1.26
RIF1-202ENST00000414861 CENPWQ5EE01 88 aa7.21□□□□□ -1.26
RIF1-202ENST00000414861 Q86TA4 180 aa7.21□□□□□ -1.26
RIF1-202ENST00000414861 MAP6D1Q9H9H5 199 aa7.21□□□□□ -1.26
RIF1-202ENST00000414861 AURKAIP1Q9NWT8 199 aaPredicted RBP7.21□□□□□ -1.26
RIF1-202ENST00000414861 CARHSP1Q9Y2V2 147 aaKnown RBP7.21□□□□□ -1.26
RIF1-202ENST00000414861 KLF12Q9Y4X4 402 aa7.21□□□□□ -1.26
RIF1-202ENST00000414861 KRBOX1C9JBD0 128 aa7.21□□□□□ -1.26
RIF1-202ENST00000414861 TMEM183BQ1AE95 376 aa7.21□□□□□ -1.26
RIF1-202ENST00000414861 TMEM75Q8N9X5 138 aa7.21□□□□□ -1.26
RIF1-202ENST00000414861 NHLRC2Q8NBF2 726 aa7.21□□□□□ -1.26
RIF1-202ENST00000414861 OR2K2Q8NGT1 345 aa7.21□□□□□ -1.26
RIF1-202ENST00000414861 CLEC5AQ9NY25 188 aa7.21□□□□□ -1.26
RIF1-202ENST00000414861 DNHD1Q96M86 4753 aa7.2□□□□□ -1.26
RIF1-202ENST00000414861 INSL3P51460 131 aa7.2□□□□□ -1.26
RIF1-202ENST00000414861 RIPPLY3P57055 190 aa7.2□□□□□ -1.26
RIF1-202ENST00000414861 DEFB131AP59861 70 aa7.2□□□□□ -1.26
RIF1-202ENST00000414861 ARL6IP6Q8N6S5 226 aa7.2□□□□□ -1.26
RIF1-202ENST00000414861 FMC1Q96HJ9 113 aa7.2□□□□□ -1.26
RIF1-202ENST00000414861 GPR61Q9BZJ8 451 aa7.2□□□□□ -1.26
RIF1-202ENST00000414861 IGLV2-8P01709 118 aa7.2□□□□□ -1.26
RIF1-202ENST00000414861 APOC3P02656 99 aa7.2□□□□□ -1.26
RIF1-202ENST00000414861 CD7P09564 240 aa7.2□□□□□ -1.26
RIF1-202ENST00000414861 UBE2G1P62253 170 aa7.2□□□□□ -1.26
RIF1-202ENST00000414861 FLI1Q01543 452 aaPredicted RBP7.2□□□□□ -1.26
RIF1-202ENST00000414861 HIST1H1AQ02539 215 aaPredicted RBP7.2□□□□□ -1.26
RIF1-202ENST00000414861 PRNTQ86SH4 94 aa7.2□□□□□ -1.26
RIF1-202ENST00000414861 OR8A1Q8NGG7 326 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 271.2 ms