RNA–Protein interactions for RNA: ENST00000399455.2

USP47-203, Transcript of ubiquitin specific peptidase 47, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP47, Length 7,396 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-203ENST00000399455 Q6ZWC4 215 aa6.32□□□□□ -1.4
USP47-203ENST00000399455 LY6G6DO95868 133 aa6.32□□□□□ -1.4
USP47-203ENST00000399455 UBE2BP63146 152 aa6.32□□□□□ -1.4
USP47-203ENST00000399455 WDR86Q86TI4 376 aa6.32□□□□□ -1.4
USP47-203ENST00000399455 C14orf178Q8N769 122 aaPredicted RBP6.32□□□□□ -1.4
USP47-203ENST00000399455 TRAV13-1A0A0B4J241 112 aa6.32□□□□□ -1.4
USP47-203ENST00000399455 H3BRN7 92 aa6.32□□□□□ -1.4
USP47-203ENST00000399455 HILS1P60008 231 aa6.32□□□□□ -1.4
USP47-203ENST00000399455 DUX4L9Q6RFH8 374 aaPredicted RBP6.32□□□□□ -1.4
USP47-203ENST00000399455 DERL1Q9BUN8 251 aa6.32□□□□□ -1.4
USP47-203ENST00000399455 OBSL1O75147 1896 aa6.32□□□□□ -1.4
USP47-203ENST00000399455 ZFP36P26651 326 aaKnown RBP6.32□□□□□ -1.4
USP47-203ENST00000399455 PAX2Q02962 417 aa6.32□□□□□ -1.4
USP47-203ENST00000399455 DEFB136Q30KP8 78 aa6.32□□□□□ -1.4
USP47-203ENST00000399455 TMEM14EPQ6UXP3 125 aa6.32□□□□□ -1.4
USP47-203ENST00000399455 ZNRD1Q9P1U0 126 aa6.32□□□□□ -1.4
USP47-203ENST00000399455 MYO7BQ6PIF6 2116 aa6.32□□□□□ -1.4
USP47-203ENST00000399455 SRP19P09132 144 aaKnown RBP6.31□□□□□ -1.4
USP47-203ENST00000399455 SPRY4Q9C004 299 aa6.31□□□□□ -1.4
USP47-203ENST00000399455 LIME1Q9H400 295 aa6.31□□□□□ -1.4
USP47-203ENST00000399455 NOP10Q9NPE3 64 aaKnown RBP6.31□□□□□ -1.4
USP47-203ENST00000399455 ZDBF2Q9HCK1 2354 aa6.31□□□□□ -1.4
USP47-203ENST00000399455 IGKV1OR2-108A0A075B7D4 117 aa6.31□□□□□ -1.4
USP47-203ENST00000399455 ZNF503-AS2A6NEH8 195 aa6.31□□□□□ -1.4
USP47-203ENST00000399455 TRAV2A0A0B4J234 112 aa6.31□□□□□ -1.4
USP47-203ENST00000399455 LY6G6FQ5SQ64 297 aa6.31□□□□□ -1.4
USP47-203ENST00000399455 IGFL4Q6B9Z1 124 aa6.31□□□□□ -1.4
USP47-203ENST00000399455 A0A087WWC5 75 aa6.31□□□□□ -1.4
USP47-203ENST00000399455 ANGP03950 147 aaKnown RBP6.31□□□□□ -1.4
USP47-203ENST00000399455 C1orf43Q9BWL3 253 aa6.31□□□□□ -1.4
USP47-203ENST00000399455 GNB1LQ9BYB4 327 aa6.31□□□□□ -1.4
USP47-203ENST00000399455 IGHV3-16A0A0C4DH30 117 aa6.31□□□□□ -1.4
USP47-203ENST00000399455 LHFPL1Q86WI0 220 aa6.31□□□□□ -1.4
USP47-203ENST00000399455 LY6G5BQ8NDX9 201 aa6.31□□□□□ -1.4
USP47-203ENST00000399455 PYGO2Q9BRQ0 406 aa6.31□□□□□ -1.4
USP47-203ENST00000399455 TMEM14CQ9P0S9 112 aa6.31□□□□□ -1.4
USP47-203ENST00000399455 SPRY2O43597 315 aa6.3□□□□□ -1.4
USP47-203ENST00000399455 QRFPP83859 136 aa6.3□□□□□ -1.4
USP47-203ENST00000399455 ZNF48Q96MX3 618 aaPredicted RBP6.3□□□□□ -1.4
USP47-203ENST00000399455 SPATA25Q9BR10 227 aa6.3□□□□□ -1.4
USP47-203ENST00000399455 KLF12Q9Y4X4 402 aa6.3□□□□□ -1.4
USP47-203ENST00000399455 DOCK8Q8NF50 2099 aa6.3□□□□□ -1.4
USP47-203ENST00000399455 CEP192Q8TEP8 1941 aa6.3□□□□□ -1.4
USP47-203ENST00000399455 GFRA4Q9GZZ7 299 aa6.3□□□□□ -1.4
USP47-203ENST00000399455 C15orf65H3BRN8 121 aa6.3□□□□□ -1.4
USP47-203ENST00000399455 GAGE6Q13070 117 aa6.3□□□□□ -1.4
USP47-203ENST00000399455 PRR31Q5SQ13 230 aa6.3□□□□□ -1.4
USP47-203ENST00000399455 Q86TA4 180 aa6.3□□□□□ -1.4
USP47-203ENST00000399455 C5orf56Q8N8D9 126 aa6.3□□□□□ -1.4
USP47-203ENST00000399455 MRPL53Q96EL3 112 aaKnown RBP6.3□□□□□ -1.4
USP47-203ENST00000399455 GFI1Q99684 422 aa6.3□□□□□ -1.4
USP47-203ENST00000399455 TMEM126AQ9H061 195 aa6.3□□□□□ -1.4
USP47-203ENST00000399455 DENND4AQ7Z401 1863 aa6.3□□□□□ -1.4
USP47-203ENST00000399455 CACNA1BQ00975 2339 aa6.3□□□□□ -1.4
USP47-203ENST00000399455 ZNF114Q8NC26 417 aa6.3□□□□□ -1.4
USP47-203ENST00000399455 MBD3L1Q8WWY6 194 aa6.3□□□□□ -1.4
USP47-203ENST00000399455 TMEM141Q96I45 108 aa6.3□□□□□ -1.4
USP47-203ENST00000399455 TP53BP1Q12888 1972 aaPredicted RBP6.3□□□□□ -1.4
USP47-203ENST00000399455 CRLF1O75462 422 aa6.3□□□□□ -1.4
USP47-203ENST00000399455 C14orf177Q52M58 125 aa6.3□□□□□ -1.4
USP47-203ENST00000399455 CTSZQ9UBR2 303 aa6.3□□□□□ -1.4
USP47-203ENST00000399455 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP6.3□□□□□ -1.4
USP47-203ENST00000399455 LINC00614P0C842 121 aa6.3□□□□□ -1.4
USP47-203ENST00000399455 SMIM6P0DI80 62 aa6.3□□□□□ -1.4
USP47-203ENST00000399455 ZNRF2Q8NHG8 242 aa6.3□□□□□ -1.4
USP47-203ENST00000399455 KIAA1549LQ6ZVL6 1849 aa6.3□□□□□ -1.4
USP47-203ENST00000399455 IGHV3-64A0A075B6Q5 118 aa6.29□□□□□ -1.4
USP47-203ENST00000399455 NTF4P34130 210 aa6.29□□□□□ -1.4
USP47-203ENST00000399455 TRAV12-2A0A075B6T6 113 aa6.29□□□□□ -1.4
USP47-203ENST00000399455 A0A087X0M5 115 aa6.29□□□□□ -1.4
USP47-203ENST00000399455 A0A0J9YY99 117 aa6.29□□□□□ -1.4
USP47-203ENST00000399455 A0A1B0GX30 115 aa6.29□□□□□ -1.4
USP47-203ENST00000399455 RPL23P62829 140 aaKnown RBP6.29□□□□□ -1.4
USP47-203ENST00000399455 TMEM95Q3KNT9 176 aa6.29□□□□□ -1.4
USP47-203ENST00000399455 RNF144BQ7Z419 303 aa6.29□□□□□ -1.4
USP47-203ENST00000399455 GATD1Q8NB37 220 aa6.29□□□□□ -1.4
USP47-203ENST00000399455 A0A1W2PNU3 283 aaPredicted RBP6.29□□□□□ -1.4
USP47-203ENST00000399455 RPL32P62910 135 aaKnown RBP6.29□□□□□ -1.4
USP47-203ENST00000399455 ZNF493Q6ZR52 646 aa6.29□□□□□ -1.4
USP47-203ENST00000399455 CITED2Q99967 270 aaPredicted RBP6.29□□□□□ -1.4
USP47-203ENST00000399455 LY96Q9Y6Y9 160 aa6.29□□□□□ -1.4
USP47-203ENST00000399455 COL5A1-AS1Q5SY13 56 aa6.29□□□□□ -1.4
USP47-203ENST00000399455 C5orf24Q7Z6I8 188 aa6.29□□□□□ -1.4
USP47-203ENST00000399455 ARMS2P0C7Q2 107 aa6.29□□□□□ -1.4
USP47-203ENST00000399455 LAIR2Q6ISS4 152 aa6.29□□□□□ -1.4
USP47-203ENST00000399455 NHP2Q9NX24 153 aaKnown RBP6.29□□□□□ -1.4
USP47-203ENST00000399455 A0A1B0GW64 132 aa6.29□□□□□ -1.4
USP47-203ENST00000399455 TYMSP04818 313 aa6.29□□□□□ -1.4
USP47-203ENST00000399455 TIMM21Q9BVV7 248 aa6.29□□□□□ -1.4
USP47-203ENST00000399455 D6R8Y8 96 aa6.28□□□□□ -1.4
USP47-203ENST00000399455 NMBP08949 121 aa6.28□□□□□ -1.4
USP47-203ENST00000399455 LAMTOR3Q9UHA4 124 aa6.28□□□□□ -1.4
USP47-203ENST00000399455 IGHV4OR15-8A0A075B7B6 117 aa6.28□□□□□ -1.4
USP47-203ENST00000399455 A0A087WW49 117 aa6.28□□□□□ -1.4
USP47-203ENST00000399455 C8orf49Q96NF6 230 aa6.28□□□□□ -1.4
USP47-203ENST00000399455 SSBP4Q9BWG4 385 aaPredicted RBP6.28□□□□□ -1.4
USP47-203ENST00000399455 Q9HAA7 133 aa6.28□□□□□ -1.4
USP47-203ENST00000399455 Q6YL49 198 aa6.28□□□□□ -1.4
USP47-203ENST00000399455 RNF126Q9BV68 326 aa6.28□□□□□ -1.4
USP47-203ENST00000399455 CEP290O15078 2479 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms