RNA–Protein interactions for RNA: ENST00000393452.7

TDP1-202, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best) BASIC

Gene TDP1, Length 2,370 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-202ENST00000393452 CSPG4Q6UVK1 2322 aa6.99□□□□□ -1.29
TDP1-202ENST00000393452 MYO18BQ8IUG5 2567 aa6.99□□□□□ -1.29
TDP1-202ENST00000393452 A6NDX4 124 aa6.99□□□□□ -1.29
TDP1-202ENST00000393452 B4DSR2 109 aa6.99□□□□□ -1.29
TDP1-202ENST00000393452 CHEK1O14757 476 aa6.99□□□□□ -1.29
TDP1-202ENST00000393452 ZNF324O75467 553 aaPredicted RBP6.99□□□□□ -1.29
TDP1-202ENST00000393452 SCGB1D1O95968 90 aa6.99□□□□□ -1.29
TDP1-202ENST00000393452 CD33P20138 364 aa6.99□□□□□ -1.29
TDP1-202ENST00000393452 C1orf194Q5T5A4 169 aa6.99□□□□□ -1.29
TDP1-202ENST00000393452 SIGLECL1Q8N7X8 197 aa6.99□□□□□ -1.29
TDP1-202ENST00000393452 C8orf49Q96NF6 230 aa6.99□□□□□ -1.29
TDP1-202ENST00000393452 IGHG2P01859 326 aa6.98□□□□□ -1.29
TDP1-202ENST00000393452 PRB4P10163 310 aaPredicted RBP6.98□□□□□ -1.29
TDP1-202ENST00000393452 RELQ04864 619 aaPredicted RBP6.98□□□□□ -1.29
TDP1-202ENST00000393452 ATP5G2Q06055 141 aa6.98□□□□□ -1.29
TDP1-202ENST00000393452 SAPCD1Q5SSQ6 148 aa6.98□□□□□ -1.29
TDP1-202ENST00000393452 PRR25Q96S07 402 aa6.98□□□□□ -1.29
TDP1-202ENST00000393452 ASCL2Q99929 193 aa6.98□□□□□ -1.29
TDP1-202ENST00000393452 U3KQE9 123 aa6.98□□□□□ -1.29
TDP1-202ENST00000393452 IGKV2-40A0A087WW87 121 aaPredicted RBP6.98□□□□□ -1.29
TDP1-202ENST00000393452 IGKV2D-40P01614 121 aaPredicted RBP6.98□□□□□ -1.29
TDP1-202ENST00000393452 CT45A10P0DMU9 189 aa6.98□□□□□ -1.29
TDP1-202ENST00000393452 GATA3P23771 443 aa6.98□□□□□ -1.29
TDP1-202ENST00000393452 AMTP48728 403 aa6.98□□□□□ -1.29
TDP1-202ENST00000393452 REC114Q7Z4M0 266 aa6.98□□□□□ -1.29
TDP1-202ENST00000393452 GATD1Q8NB37 220 aa6.98□□□□□ -1.29
TDP1-202ENST00000393452 NRN1Q9NPD7 142 aa6.98□□□□□ -1.29
TDP1-202ENST00000393452 HIF1ANQ9NWT6 349 aa6.98□□□□□ -1.29
TDP1-202ENST00000393452 A0A1B0GUT8 65 aa6.97□□□□□ -1.29
TDP1-202ENST00000393452 H3BUX3 64 aa6.97□□□□□ -1.29
TDP1-202ENST00000393452 M0QZK8 103 aa6.97□□□□□ -1.29
TDP1-202ENST00000393452 AVPP01185 164 aa6.97□□□□□ -1.29
TDP1-202ENST00000393452 PPIFP30405 207 aaKnown RBP6.97□□□□□ -1.29
TDP1-202ENST00000393452 ZNF124Q15973 351 aa6.97□□□□□ -1.29
TDP1-202ENST00000393452 Q6AWC8 147 aa6.97□□□□□ -1.29
TDP1-202ENST00000393452 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa6.97□□□□□ -1.29
TDP1-202ENST00000393452 TEX43Q6ZNM6 134 aa6.97□□□□□ -1.29
TDP1-202ENST00000393452 NIT1Q86X76 327 aa6.97□□□□□ -1.29
TDP1-202ENST00000393452 NRGNQ92686 78 aa6.97□□□□□ -1.29
TDP1-202ENST00000393452 SLC50A1Q9BRV3 221 aa6.97□□□□□ -1.29
TDP1-202ENST00000393452 RNF114Q9Y508 228 aa6.97□□□□□ -1.29
TDP1-202ENST00000393452 FAM208BQ5VWN6 2430 aa6.97□□□□□ -1.29
TDP1-202ENST00000393452 A0A096LNT2 108 aa6.97□□□□□ -1.29
TDP1-202ENST00000393452 KIR2DL5BA0A0G2JN68 375 aa6.97□□□□□ -1.29
TDP1-202ENST00000393452 KIR2DL5BA0A0G2JPC4 375 aa6.97□□□□□ -1.29
TDP1-202ENST00000393452 H3BUA1 57 aa6.97□□□□□ -1.29
TDP1-202ENST00000393452 SLC25A16P16260 332 aa6.97□□□□□ -1.29
TDP1-202ENST00000393452 HLA-DMBP28068 263 aa6.97□□□□□ -1.29
TDP1-202ENST00000393452 FAM162BQ5T6X4 162 aa6.97□□□□□ -1.29
TDP1-202ENST00000393452 LCN12Q6JVE5 192 aa6.97□□□□□ -1.29
TDP1-202ENST00000393452 KIR2DL5AQ8N109 375 aa6.97□□□□□ -1.29
TDP1-202ENST00000393452 METTL26Q96S19 204 aa6.97□□□□□ -1.29
TDP1-202ENST00000393452 VGLL1Q99990 258 aa6.97□□□□□ -1.29
TDP1-202ENST00000393452 NDFIP1Q9BT67 221 aa6.97□□□□□ -1.29
TDP1-202ENST00000393452 LINC00527Q9UJ94 153 aa6.97□□□□□ -1.29
TDP1-202ENST00000393452 ZNF462Q96JM2 2506 aa6.97□□□□□ -1.29
TDP1-202ENST00000393452 LOC102724200A0A096LPH7 203 aaPredicted RBP6.96□□□□□ -1.29
TDP1-202ENST00000393452 A0A1B0GW15 77 aa6.96□□□□□ -1.29
TDP1-202ENST00000393452 RBAKDNA6NC62 111 aa6.96□□□□□ -1.29
TDP1-202ENST00000393452 TRGV3P03979 118 aa6.96□□□□□ -1.29
TDP1-202ENST00000393452 ARMS2P0C7Q2 107 aa6.96□□□□□ -1.29
TDP1-202ENST00000393452 IGFL4Q6B9Z1 124 aa6.96□□□□□ -1.29
TDP1-202ENST00000393452 Q8N976 141 aa6.96□□□□□ -1.29
TDP1-202ENST00000393452 BAHCC1Q9P281 2608 aa6.96□□□□□ -1.29
TDP1-202ENST00000393452 ZNF705FA8MVS1 300 aaPredicted RBP6.96□□□□□ -1.3
TDP1-202ENST00000393452 SH2D1AO60880 128 aa6.96□□□□□ -1.3
TDP1-202ENST00000393452 PMCHP20382 165 aa6.96□□□□□ -1.3
TDP1-202ENST00000393452 SRSF1Q07955 248 aaKnown RBP eCLIP6.96□□□□□ -1.3
TDP1-202ENST00000393452 LY6EQ16553 131 aa6.96□□□□□ -1.3
TDP1-202ENST00000393452 FAM19A2Q8N3H0 131 aa6.96□□□□□ -1.3
TDP1-202ENST00000393452 URB1-AS1Q96HZ7 61 aa6.96□□□□□ -1.3
TDP1-202ENST00000393452 VPS13CQ709C8 3753 aa6.96□□□□□ -1.3
TDP1-202ENST00000393452 A6NJY4 79 aa6.95□□□□□ -1.3
TDP1-202ENST00000393452 RIGQ13278 110 aa6.95□□□□□ -1.3
TDP1-202ENST00000393452 ZNF843Q8N446 348 aa6.95□□□□□ -1.3
TDP1-202ENST00000393452 MRPL53Q96EL3 112 aaKnown RBP6.95□□□□□ -1.3
TDP1-202ENST00000393452 USMG5Q96IX5 58 aa6.95□□□□□ -1.3
TDP1-202ENST00000393452 NDUFAF3Q9BU61 184 aa6.95□□□□□ -1.3
TDP1-202ENST00000393452 CELSR1Q9NYQ6 3014 aa6.95□□□□□ -1.3
TDP1-202ENST00000393452 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP6.95□□□□□ -1.3
TDP1-202ENST00000393452 TMEM189A5PLL7 270 aa6.95□□□□□ -1.3
TDP1-202ENST00000393452 HSBP1O75506 76 aa6.95□□□□□ -1.3
TDP1-202ENST00000393452 ZNF705DP0CH99 300 aaPredicted RBP6.95□□□□□ -1.3
TDP1-202ENST00000393452 ZNF705BP0CI00 300 aaPredicted RBP6.95□□□□□ -1.3
TDP1-202ENST00000393452 ZNF80P51504 273 aaPredicted RBP6.95□□□□□ -1.3
TDP1-202ENST00000393452 BLCAPP62952 87 aa6.95□□□□□ -1.3
TDP1-202ENST00000393452 SRSF2Q01130 221 aaKnown RBP6.95□□□□□ -1.3
TDP1-202ENST00000393452 PRR31Q5SQ13 230 aa6.95□□□□□ -1.3
TDP1-202ENST00000393452 DMRTA1Q5VZB9 504 aa6.95□□□□□ -1.3
TDP1-202ENST00000393452 ZNF493Q6ZR52 646 aa6.95□□□□□ -1.3
TDP1-202ENST00000393452 Q8TAT8 98 aa6.95□□□□□ -1.3
TDP1-202ENST00000393452 PSMG3-AS1Q96PY0 264 aa6.95□□□□□ -1.3
TDP1-202ENST00000393452 ZNF580Q9UK33 172 aa6.95□□□□□ -1.3
TDP1-202ENST00000393452 UTP20O75691 2785 aaKnown RBP6.95□□□□□ -1.3
TDP1-202ENST00000393452 USP9YO00507 2555 aaPredicted RBP6.95□□□□□ -1.3
TDP1-202ENST00000393452 TRAV8-2A0A0B4J237 113 aa6.94□□□□□ -1.3
TDP1-202ENST00000393452 IGHV3-66A0A0C4DH42 116 aa6.94□□□□□ -1.3
TDP1-202ENST00000393452 PRAC2D3DTV9 90 aa6.94□□□□□ -1.3
TDP1-202ENST00000393452 NDUFA4O00483 81 aa6.94□□□□□ -1.3
TDP1-202ENST00000393452 COX6B1P14854 86 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms