RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 LYPD2Q6UXB3 125 aa11.43□□□□□ -0.58
RTF1-201ENST00000389629 IGHV3-64A0A075B6Q5 118 aa11.43□□□□□ -0.58
RTF1-201ENST00000389629 IGHV1-8P0DP01 117 aa11.43□□□□□ -0.58
RTF1-201ENST00000389629 ZNF56Q15929 161 aa11.43□□□□□ -0.58
RTF1-201ENST00000389629 TNFRSF14Q92956 283 aa11.43□□□□□ -0.58
RTF1-201ENST00000389629 VGLL1Q99990 258 aa11.43□□□□□ -0.58
RTF1-201ENST00000389629 TTTY13Q9BZ97 58 aa11.43□□□□□ -0.58
RTF1-201ENST00000389629 UBTD1Q9HAC8 227 aa11.43□□□□□ -0.58
RTF1-201ENST00000389629 COL6A6A6NMZ7 2263 aa11.43□□□□□ -0.58
RTF1-201ENST00000389629 TNFRSF6BO95407 300 aa11.43□□□□□ -0.58
RTF1-201ENST00000389629 SYT8Q8NBV8 401 aa11.43□□□□□ -0.58
RTF1-201ENST00000389629 IGF2BP2-AS1Q96M15 143 aa11.43□□□□□ -0.58
RTF1-201ENST00000389629 TPSG1Q9NRR2 321 aa11.43□□□□□ -0.58
RTF1-201ENST00000389629 TRAV2A0A0B4J234 112 aa11.42□□□□□ -0.58
RTF1-201ENST00000389629 TIMM23O14925 209 aa11.42□□□□□ -0.58
RTF1-201ENST00000389629 NPYP01303 97 aa11.42□□□□□ -0.58
RTF1-201ENST00000389629 SPRNQ5BIV9 151 aa11.42□□□□□ -0.58
RTF1-201ENST00000389629 FAM120AOSQ5T036 256 aa11.42□□□□□ -0.58
RTF1-201ENST00000389629 GLMPQ8WWB7 406 aa11.42□□□□□ -0.58
RTF1-201ENST00000389629 IGKV1OR2-108A0A075B7D4 117 aa11.42□□□□□ -0.58
RTF1-201ENST00000389629 DIAPH2-AS1Q14236 149 aa11.42□□□□□ -0.58
RTF1-201ENST00000389629 FOXC1Q12948 553 aa11.42□□□□□ -0.58
RTF1-201ENST00000389629 CLEC19AQ6UXS0 136 aa11.42□□□□□ -0.58
RTF1-201ENST00000389629 CDX4O14627 284 aaPredicted RBP11.42□□□□□ -0.58
RTF1-201ENST00000389629 ASIPP42127 132 aa11.42□□□□□ -0.58
RTF1-201ENST00000389629 LINC01560Q8TB33 94 aa11.42□□□□□ -0.58
RTF1-201ENST00000389629 NPIPB6E9PJ23 425 aa11.41□□□□□ -0.58
RTF1-201ENST00000389629 FAM106CPP0CH98 169 aa11.41□□□□□ -0.58
RTF1-201ENST00000389629 C5orf42Q9H799 3197 aa11.41□□□□□ -0.58
RTF1-201ENST00000389629 NBR2O15453 112 aa11.41□□□□□ -0.58
RTF1-201ENST00000389629 SIGLEC9Q9Y336 463 aa11.41□□□□□ -0.58
RTF1-201ENST00000389629 TMEM178BH3BS89 294 aa11.41□□□□□ -0.58
RTF1-201ENST00000389629 CNTFRP26992 372 aa11.41□□□□□ -0.58
RTF1-201ENST00000389629 TMEM262E9PQX1 116 aa11.41□□□□□ -0.58
RTF1-201ENST00000389629 PROP1O75360 226 aa11.41□□□□□ -0.58
RTF1-201ENST00000389629 VCX2Q9H322 139 aa11.41□□□□□ -0.58
RTF1-201ENST00000389629 GTSF1Q8WW33 167 aa11.4□□□□□ -0.58
RTF1-201ENST00000389629 NPFFR1Q9GZQ6 430 aa11.4□□□□□ -0.58
RTF1-201ENST00000389629 IGHV1-3A0A0C4DH29 117 aa11.4□□□□□ -0.58
RTF1-201ENST00000389629 B9A039 149 aa11.4□□□□□ -0.58
RTF1-201ENST00000389629 F8W1H4 67 aa11.4□□□□□ -0.58
RTF1-201ENST00000389629 APOBEC3AP31941 199 aaPredicted RBP11.4□□□□□ -0.58
RTF1-201ENST00000389629 POU2AF1Q16633 256 aa11.4□□□□□ -0.58
RTF1-201ENST00000389629 PTPRSQ13332 1948 aa11.4□□□□□ -0.58
RTF1-201ENST00000389629 NDUFS7O75251 213 aa11.4□□□□□ -0.58
RTF1-201ENST00000389629 ADIPOQQ15848 244 aa11.4□□□□□ -0.58
RTF1-201ENST00000389629 ZNF562Q6V9R5 426 aa11.4□□□□□ -0.58
RTF1-201ENST00000389629 FAM57AQ8TBR7 257 aa11.4□□□□□ -0.58
RTF1-201ENST00000389629 RNASE6Q93091 150 aaKnown RBP11.4□□□□□ -0.58
RTF1-201ENST00000389629 GDF5OSQ5U4N7 250 aa11.4□□□□□ -0.59
RTF1-201ENST00000389629 LINC01545Q5VT33 79 aa11.4□□□□□ -0.59
RTF1-201ENST00000389629 C10orf126Q8N4M7 172 aa11.4□□□□□ -0.59
RTF1-201ENST00000389629 C17orf77Q96MU5 243 aa11.4□□□□□ -0.59
RTF1-201ENST00000389629 ORMDL2Q53FV1 153 aa11.39□□□□□ -0.59
RTF1-201ENST00000389629 ZNF833PQ6ZTB9 187 aa11.39□□□□□ -0.59
RTF1-201ENST00000389629 RAX2Q96IS3 184 aa11.39□□□□□ -0.59
RTF1-201ENST00000389629 MRPL35Q9NZE8 188 aaKnown RBP11.39□□□□□ -0.59
RTF1-201ENST00000389629 ERCC8Q13216 396 aa11.39□□□□□ -0.59
RTF1-201ENST00000389629 FAM159AQ6UWV7 190 aa11.39□□□□□ -0.59
RTF1-201ENST00000389629 PF4V1P10720 104 aa11.39□□□□□ -0.59
RTF1-201ENST00000389629 RNASE4P34096 147 aaKnown RBP11.39□□□□□ -0.59
RTF1-201ENST00000389629 LINC00310P59036 64 aa11.39□□□□□ -0.59
RTF1-201ENST00000389629 CRXO43186 299 aaPredicted RBP11.38□□□□□ -0.59
RTF1-201ENST00000389629 IGLV1-44P01699 117 aa11.38□□□□□ -0.59
RTF1-201ENST00000389629 PLNP26678 52 aa11.38□□□□□ -0.59
RTF1-201ENST00000389629 TMEM95Q3KNT9 176 aa11.38□□□□□ -0.59
RTF1-201ENST00000389629 SRSF8Q9BRL6 282 aaKnown RBP11.38□□□□□ -0.59
RTF1-201ENST00000389629 LINC01549A6NIU2 74 aa11.38□□□□□ -0.59
RTF1-201ENST00000389629 SPATA12Q7Z6I5 190 aa11.38□□□□□ -0.59
RTF1-201ENST00000389629 DDB2Q92466 427 aa11.38□□□□□ -0.59
RTF1-201ENST00000389629 BRCA2P51587 3418 aa11.38□□□□□ -0.59
RTF1-201ENST00000389629 HTTP42858 3142 aa11.38□□□□□ -0.59
RTF1-201ENST00000389629 TRBV19A0A075B6N1 114 aa11.38□□□□□ -0.59
RTF1-201ENST00000389629 H7C1H1 209 aa11.38□□□□□ -0.59
RTF1-201ENST00000389629 LTAP01374 205 aa11.38□□□□□ -0.59
RTF1-201ENST00000389629 KLRB1Q12918 225 aa11.38□□□□□ -0.59
RTF1-201ENST00000389629 WFDC2Q14508 124 aa11.38□□□□□ -0.59
RTF1-201ENST00000389629 PATE2Q6UY27 113 aa11.38□□□□□ -0.59
RTF1-201ENST00000389629 FAM167A-AS1Q96KT0 104 aa11.38□□□□□ -0.59
RTF1-201ENST00000389629 SHANK2-AS3Q9BTD1 123 aa11.38□□□□□ -0.59
RTF1-201ENST00000389629 TMEM155Q4W5P6 130 aa11.38□□□□□ -0.59
RTF1-201ENST00000389629 MRAP2Q96G30 205 aa11.38□□□□□ -0.59
RTF1-201ENST00000389629 MBD3L4A6NDZ8 208 aaPredicted RBP11.37□□□□□ -0.59
RTF1-201ENST00000389629 MBD3L3A6NE82 208 aaPredicted RBP11.37□□□□□ -0.59
RTF1-201ENST00000389629 MBD3L5A6NJ08 208 aaPredicted RBP11.37□□□□□ -0.59
RTF1-201ENST00000389629 MBD3L2Q8NHZ7 208 aaPredicted RBP11.37□□□□□ -0.59
RTF1-201ENST00000389629 CPAMD8Q8IZJ3 1885 aa11.37□□□□□ -0.59
RTF1-201ENST00000389629 ZNF503Q96F45 646 aa11.37□□□□□ -0.59
RTF1-201ENST00000389629 CCL21O00585 134 aa11.37□□□□□ -0.59
RTF1-201ENST00000389629 FXYD2P54710 66 aa11.37□□□□□ -0.59
RTF1-201ENST00000389629 CEND1Q8N111 149 aa11.37□□□□□ -0.59
RTF1-201ENST00000389629 TRAV26-2A0A0B4J265 109 aa11.36□□□□□ -0.59
RTF1-201ENST00000389629 TRAV12-3A0A0B4J271 114 aa11.36□□□□□ -0.59
RTF1-201ENST00000389629 TMEM75Q8N9X5 138 aa11.36□□□□□ -0.59
RTF1-201ENST00000389629 G3V4G9 280 aa11.36□□□□□ -0.59
RTF1-201ENST00000389629 PCNX2A6NKB5 2137 aa11.36□□□□□ -0.59
RTF1-201ENST00000389629 PRSS46E5RG02 174 aa11.36□□□□□ -0.59
RTF1-201ENST00000389629 ATP5G2Q06055 141 aa11.36□□□□□ -0.59
RTF1-201ENST00000389629 UTF1Q5T230 341 aa11.36□□□□□ -0.59
RTF1-201ENST00000389629 ERG28Q9UKR5 140 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms