RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 Q9H3A6 140 aa7.84□□□□□ -1.15
VPS53-202ENST00000389040 C21orf62Q9NYP8 219 aa7.84□□□□□ -1.15
VPS53-202ENST00000389040 KLF12Q9Y4X4 402 aa7.84□□□□□ -1.15
VPS53-202ENST00000389040 STAB1Q9NY15 2570 aa7.84□□□□□ -1.15
VPS53-202ENST00000389040 TENM1Q9UKZ4 2725 aa7.84□□□□□ -1.15
VPS53-202ENST00000389040 TRBV7-1A0A0A6YYK4 115 aa7.84□□□□□ -1.16
VPS53-202ENST00000389040 WI2-2373I1.2A0A1W2PRP0 233 aa7.84□□□□□ -1.16
VPS53-202ENST00000389040 F8W735 103 aaPredicted RBP7.84□□□□□ -1.16
VPS53-202ENST00000389040 OR2J3O76001 311 aa7.84□□□□□ -1.16
VPS53-202ENST00000389040 NDUFB8O95169 186 aa7.84□□□□□ -1.16
VPS53-202ENST00000389040 RHOGP84095 191 aa7.84□□□□□ -1.16
VPS53-202ENST00000389040 ATP5G2Q06055 141 aa7.84□□□□□ -1.16
VPS53-202ENST00000389040 KHDC1LQ5JSQ8 128 aa7.84□□□□□ -1.16
VPS53-202ENST00000389040 OR8I2Q8N0Y5 310 aa7.84□□□□□ -1.16
VPS53-202ENST00000389040 C11orf44Q8N8P7 122 aa7.84□□□□□ -1.16
VPS53-202ENST00000389040 VN1R17PQ8TDU5 208 aa7.84□□□□□ -1.16
VPS53-202ENST00000389040 OTORQ9NRC9 128 aa7.84□□□□□ -1.16
VPS53-202ENST00000389040 ZNF586Q9NXT0 402 aa7.84□□□□□ -1.16
VPS53-202ENST00000389040 SCGB2A1O75556 95 aa7.83□□□□□ -1.16
VPS53-202ENST00000389040 TCRAP04437 139 aa7.83□□□□□ -1.16
VPS53-202ENST00000389040 LGALS1P09382 135 aaKnown RBP7.83□□□□□ -1.16
VPS53-202ENST00000389040 FAM231DQ6ZW35 169 aa7.83□□□□□ -1.16
VPS53-202ENST00000389040 S100A7AQ86SG5 101 aa7.83□□□□□ -1.16
VPS53-202ENST00000389040 BPIFA4PQ86YQ2 179 aa7.83□□□□□ -1.16
VPS53-202ENST00000389040 KLHL30-AS1Q8NEE0 82 aa7.83□□□□□ -1.16
VPS53-202ENST00000389040 TMEM190Q8WZ59 177 aa7.83□□□□□ -1.16
VPS53-202ENST00000389040 SMIM12Q96EX1 92 aa7.83□□□□□ -1.16
VPS53-202ENST00000389040 FMC1Q96HJ9 113 aa7.83□□□□□ -1.16
VPS53-202ENST00000389040 MS4A10Q96PG2 267 aa7.83□□□□□ -1.16
VPS53-202ENST00000389040 RPH3ALQ9UNE2 315 aa7.83□□□□□ -1.16
VPS53-202ENST00000389040 RNF24Q9Y225 148 aa7.83□□□□□ -1.16
VPS53-202ENST00000389040 ZNF705GA8MUZ8 300 aaPredicted RBP7.82□□□□□ -1.16
VPS53-202ENST00000389040 IGLC2P0DOY2 106 aa7.82□□□□□ -1.16
VPS53-202ENST00000389040 FABP4P15090 132 aa7.82□□□□□ -1.16
VPS53-202ENST00000389040 CBLN1P23435 193 aa7.82□□□□□ -1.16
VPS53-202ENST00000389040 USF2Q15853 346 aaPredicted RBP7.82□□□□□ -1.16
VPS53-202ENST00000389040 C15orf32Q32M92 178 aa7.82□□□□□ -1.16
VPS53-202ENST00000389040 NSUN5P1Q3KNT7 163 aa7.82□□□□□ -1.16
VPS53-202ENST00000389040 OR10D4PQ8NGN7 298 aa7.82□□□□□ -1.16
VPS53-202ENST00000389040 FBXL7Q9UJT9 491 aa7.82□□□□□ -1.16
VPS53-202ENST00000389040 ANK2Q01484 3957 aa7.82□□□□□ -1.16
VPS53-202ENST00000389040 SMIM27A0A1W2PRY6 76 aa7.82□□□□□ -1.16
VPS53-202ENST00000389040 OR2T8A6NH00 312 aa7.82□□□□□ -1.16
VPS53-202ENST00000389040 IGHV3-23P01764 117 aa7.82□□□□□ -1.16
VPS53-202ENST00000389040 FCGR2BP31994 310 aaPredicted RBP7.82□□□□□ -1.16
VPS53-202ENST00000389040 RPL19P84098 196 aaKnown RBP7.82□□□□□ -1.16
VPS53-202ENST00000389040 WFDC9Q8NEX5 89 aa7.82□□□□□ -1.16
VPS53-202ENST00000389040 EEF1AKMT3Q96AZ1 226 aa7.82□□□□□ -1.16
VPS53-202ENST00000389040 GPR82Q96P67 336 aa7.82□□□□□ -1.16
VPS53-202ENST00000389040 TXN2Q99757 166 aa7.82□□□□□ -1.16
VPS53-202ENST00000389040 HIST1H2BLQ99880 126 aa7.82□□□□□ -1.16
VPS53-202ENST00000389040 NIT2Q9NQR4 276 aa7.82□□□□□ -1.16
VPS53-202ENST00000389040 TRBV19A0A075B6N1 114 aa7.81□□□□□ -1.16
VPS53-202ENST00000389040 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP7.81□□□□□ -1.16
VPS53-202ENST00000389040 CCL24O00175 119 aa7.81□□□□□ -1.16
VPS53-202ENST00000389040 LTAP01374 205 aa7.81□□□□□ -1.16
VPS53-202ENST00000389040 ADMP35318 185 aa7.81□□□□□ -1.16
VPS53-202ENST00000389040 TCL1AP56279 114 aa7.81□□□□□ -1.16
VPS53-202ENST00000389040 FHL3Q13643 280 aa7.81□□□□□ -1.16
VPS53-202ENST00000389040 EXOC3-AS1Q8N2X6 119 aa7.81□□□□□ -1.16
VPS53-202ENST00000389040 OR1N2Q8NGR9 330 aa7.81□□□□□ -1.16
VPS53-202ENST00000389040 CMTM2Q8TAZ6 248 aa7.81□□□□□ -1.16
VPS53-202ENST00000389040 SGK494Q96LW2 274 aa7.81□□□□□ -1.16
VPS53-202ENST00000389040 PACRGQ96M98 296 aaPredicted RBP7.81□□□□□ -1.16
VPS53-202ENST00000389040 CHRDL1Q9BU40 450 aa7.81□□□□□ -1.16
VPS53-202ENST00000389040 MRPL18Q9H0U6 180 aaKnown RBP7.81□□□□□ -1.16
VPS53-202ENST00000389040 PGPEP1Q9NXJ5 209 aa7.81□□□□□ -1.16
VPS53-202ENST00000389040 PEF1Q9UBV8 284 aaKnown RBP7.81□□□□□ -1.16
VPS53-202ENST00000389040 MRPS12O15235 138 aaKnown RBP7.8□□□□□ -1.16
VPS53-202ENST00000389040 GATCO43716 136 aaKnown RBP7.8□□□□□ -1.16
VPS53-202ENST00000389040 CA1P00915 261 aaPredicted RBP7.8□□□□□ -1.16
VPS53-202ENST00000389040 PF4P02776 101 aa7.8□□□□□ -1.16
VPS53-202ENST00000389040 CTSGP08311 255 aa7.8□□□□□ -1.16
VPS53-202ENST00000389040 S100A12P80511 92 aa7.8□□□□□ -1.16
VPS53-202ENST00000389040 PYY3Q5JQD4 70 aa7.8□□□□□ -1.16
VPS53-202ENST00000389040 PRR27Q6MZM9 219 aa7.8□□□□□ -1.16
VPS53-202ENST00000389040 WDR73Q6P4I2 378 aa7.8□□□□□ -1.16
VPS53-202ENST00000389040 LCNL1Q6ZST4 164 aa7.8□□□□□ -1.16
VPS53-202ENST00000389040 NUDT10Q8NFP7 164 aa7.8□□□□□ -1.16
VPS53-202ENST00000389040 DPF1Q92782 380 aa7.8□□□□□ -1.16
VPS53-202ENST00000389040 NUDT11Q96G61 164 aa7.8□□□□□ -1.16
VPS53-202ENST00000389040 GRAMD2BQ96HH9 432 aa7.8□□□□□ -1.16
VPS53-202ENST00000389040 MCRIP2Q9BUT9 160 aaKnown RBP7.8□□□□□ -1.16
VPS53-202ENST00000389040 MLST8Q9BVC4 326 aa7.8□□□□□ -1.16
VPS53-202ENST00000389040 GNB1LQ9BYB4 327 aa7.8□□□□□ -1.16
VPS53-202ENST00000389040 GNB4Q9HAV0 340 aa7.8□□□□□ -1.16
VPS53-202ENST00000389040 A0A1W2PRX2 142 aa7.8□□□□□ -1.16
VPS53-202ENST00000389040 SNURFLB1AK76 121 aa7.8□□□□□ -1.16
VPS53-202ENST00000389040 LINC01619G3V211 115 aa7.8□□□□□ -1.16
VPS53-202ENST00000389040 SPINK4O60575 86 aa7.8□□□□□ -1.16
VPS53-202ENST00000389040 FRMD6-AS1P0C7T7 363 aa7.8□□□□□ -1.16
VPS53-202ENST00000389040 COX19Q49B96 90 aa7.8□□□□□ -1.16
VPS53-202ENST00000389040 SIGLEC15Q6ZMC9 328 aa7.8□□□□□ -1.16
VPS53-202ENST00000389040 C8orf86Q6ZUL3 223 aa7.8□□□□□ -1.16
VPS53-202ENST00000389040 LYPD1Q8N2G4 141 aa7.8□□□□□ -1.16
VPS53-202ENST00000389040 OR11H1Q8NG94 326 aa7.8□□□□□ -1.16
VPS53-202ENST00000389040 IZUMO1RA6ND01 250 aa7.79□□□□□ -1.16
VPS53-202ENST00000389040 AMBPP02760 352 aa7.79□□□□□ -1.16
VPS53-202ENST00000389040 MT-ND6P03923 174 aa7.79□□□□□ -1.16
VPS53-202ENST00000389040 Q86TA4 180 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms