RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 ATOH7Q8N100 152 aa9.71□□□□□ -0.85
CIITA-202ENST00000381835 CACNG8Q8WXS5 425 aa9.71□□□□□ -0.85
CIITA-202ENST00000381835 FAM167A-AS1Q96KT0 104 aa9.71□□□□□ -0.85
CIITA-202ENST00000381835 ZNF355PQ9NSJ1 428 aa9.71□□□□□ -0.85
CIITA-202ENST00000381835 MRPL27Q9P0M9 148 aaKnown RBP9.71□□□□□ -0.85
CIITA-202ENST00000381835 LAMTOR2Q9Y2Q5 125 aa9.71□□□□□ -0.85
CIITA-202ENST00000381835 CORTO00230 105 aa9.71□□□□□ -0.86
CIITA-202ENST00000381835 PVRIGQ6DKI7 326 aa9.71□□□□□ -0.86
CIITA-202ENST00000381835 RASL11AQ6T310 242 aa9.71□□□□□ -0.86
CIITA-202ENST00000381835 SMIM15Q7Z3B0 74 aa9.71□□□□□ -0.86
CIITA-202ENST00000381835 TRAV34A0A0B4J273 112 aa9.7□□□□□ -0.86
CIITA-202ENST00000381835 HSBP1O75506 76 aa9.7□□□□□ -0.86
CIITA-202ENST00000381835 IGHG2P01859 326 aa9.7□□□□□ -0.86
CIITA-202ENST00000381835 STPG4Q8N801 248 aa9.7□□□□□ -0.86
CIITA-202ENST00000381835 WIPF2Q8TF74 440 aaPredicted RBP9.7□□□□□ -0.86
CIITA-202ENST00000381835 NPIPB3Q92617 1050 aa9.7□□□□□ -0.86
CIITA-202ENST00000381835 FANCD2OSQ96PS1 177 aa9.7□□□□□ -0.86
CIITA-202ENST00000381835 MRPL36Q9P0J6 103 aaKnown RBP9.7□□□□□ -0.86
CIITA-202ENST00000381835 COX7A2P2O60397 106 aa9.7□□□□□ -0.86
CIITA-202ENST00000381835 PYYP10082 97 aa9.7□□□□□ -0.86
CIITA-202ENST00000381835 BMI1P35226 326 aa9.7□□□□□ -0.86
CIITA-202ENST00000381835 RBX1P62877 108 aa9.7□□□□□ -0.86
CIITA-202ENST00000381835 PMCHL1Q16048 86 aa9.7□□□□□ -0.86
CIITA-202ENST00000381835 ETFRF1Q6IPR1 90 aa9.7□□□□□ -0.86
CIITA-202ENST00000381835 PRR27Q6MZM9 219 aa9.7□□□□□ -0.86
CIITA-202ENST00000381835 NUDT10Q8NFP7 164 aa9.7□□□□□ -0.86
CIITA-202ENST00000381835 NUDT11Q96G61 164 aa9.7□□□□□ -0.86
CIITA-202ENST00000381835 GRAMD2BQ96HH9 432 aa9.7□□□□□ -0.86
CIITA-202ENST00000381835 PAXXQ9BUH6 204 aa9.7□□□□□ -0.86
CIITA-202ENST00000381835 TRAV41A0A0B4J266 112 aa9.69□□□□□ -0.86
CIITA-202ENST00000381835 PSMB11A5LHX3 300 aa9.69□□□□□ -0.86
CIITA-202ENST00000381835 TCF21O43680 179 aa9.69□□□□□ -0.86
CIITA-202ENST00000381835 C10orf113Q5VZT2 155 aa9.69□□□□□ -0.86
CIITA-202ENST00000381835 LCN12Q6JVE5 192 aa9.69□□□□□ -0.86
CIITA-202ENST00000381835 FAM231DQ6ZW35 169 aa9.69□□□□□ -0.86
CIITA-202ENST00000381835 NUP35Q8NFH5 326 aa9.69□□□□□ -0.86
CIITA-202ENST00000381835 FAM110DQ8TAY7 271 aaPredicted RBP9.69□□□□□ -0.86
CIITA-202ENST00000381835 S4R3C0 116 aa9.69□□□□□ -0.86
CIITA-202ENST00000381835 NF1P21359 2839 aa9.69□□□□□ -0.86
CIITA-202ENST00000381835 IGLV11-55A0A075B6I3 123 aa9.68□□□□□ -0.86
CIITA-202ENST00000381835 I3L2K1 104 aa9.68□□□□□ -0.86
CIITA-202ENST00000381835 M0R2Z0 102 aa9.68□□□□□ -0.86
CIITA-202ENST00000381835 PEX7O00628 323 aa9.68□□□□□ -0.86
CIITA-202ENST00000381835 OR2J3O76001 311 aa9.68□□□□□ -0.86
CIITA-202ENST00000381835 ZNF329Q86UD4 541 aa9.68□□□□□ -0.86
CIITA-202ENST00000381835 TMEM160Q9NX00 188 aa9.68□□□□□ -0.86
CIITA-202ENST00000381835 K7EIM0 57 aa9.68□□□□□ -0.86
CIITA-202ENST00000381835 SRD5A1P18405 259 aa9.68□□□□□ -0.86
CIITA-202ENST00000381835 GDF5OSQ5U4N7 250 aa9.68□□□□□ -0.86
CIITA-202ENST00000381835 OR1L4Q8NGR5 311 aa9.68□□□□□ -0.86
CIITA-202ENST00000381835 CHRDL1Q9BU40 450 aa9.68□□□□□ -0.86
CIITA-202ENST00000381835 FAM181BA6NEQ2 426 aa9.67□□□□□ -0.86
CIITA-202ENST00000381835 NDUFB8O95169 186 aa9.67□□□□□ -0.86
CIITA-202ENST00000381835 IGF1P05019 195 aa9.67□□□□□ -0.86
CIITA-202ENST00000381835 TSPOP30536 169 aa9.67□□□□□ -0.86
CIITA-202ENST00000381835 CAMPP49913 170 aa9.67□□□□□ -0.86
CIITA-202ENST00000381835 RNASEKQ6P5S7 137 aaKnown RBP9.67□□□□□ -0.86
CIITA-202ENST00000381835 SSBP4Q9BWG4 385 aaPredicted RBP9.67□□□□□ -0.86
CIITA-202ENST00000381835 THYN1Q9P016 225 aa9.67□□□□□ -0.86
CIITA-202ENST00000381835 F8P00451 2351 aa9.67□□□□□ -0.86
CIITA-202ENST00000381835 HIST1H1EP10412 219 aaKnown RBP9.67□□□□□ -0.86
CIITA-202ENST00000381835 HINT1P49773 126 aaPredicted RBP9.67□□□□□ -0.86
CIITA-202ENST00000381835 UBE2G1P62253 170 aa9.67□□□□□ -0.86
CIITA-202ENST00000381835 KLF5Q13887 457 aaPredicted RBP9.67□□□□□ -0.86
CIITA-202ENST00000381835 Q56UQ5 140 aa9.67□□□□□ -0.86
CIITA-202ENST00000381835 NSD1Q96L73 2696 aaPredicted RBP9.66□□□□□ -0.86
CIITA-202ENST00000381835 C20orf202A1L168 122 aa9.66□□□□□ -0.86
CIITA-202ENST00000381835 DNAJC9-AS1A6NH13 148 aa9.66□□□□□ -0.86
CIITA-202ENST00000381835 HIGD1CA8MV81 97 aa9.66□□□□□ -0.86
CIITA-202ENST00000381835 CRIP2P52943 208 aaPredicted RBP9.66□□□□□ -0.86
CIITA-202ENST00000381835 SCGB2A2Q13296 93 aa9.66□□□□□ -0.86
CIITA-202ENST00000381835 EBLN2Q6P2I7 272 aa9.66□□□□□ -0.86
CIITA-202ENST00000381835 PATE2Q6UY27 113 aa9.66□□□□□ -0.86
CIITA-202ENST00000381835 TMEM116Q8NCL8 245 aa9.66□□□□□ -0.86
CIITA-202ENST00000381835 ALKBH7Q9BT30 221 aaPredicted RBP9.66□□□□□ -0.86
CIITA-202ENST00000381835 PRSS22Q9GZN4 317 aa9.66□□□□□ -0.86
CIITA-202ENST00000381835 NPFFR1Q9GZQ6 430 aa9.66□□□□□ -0.86
CIITA-202ENST00000381835 TRAV9-2A0A087WT02 112 aa9.66□□□□□ -0.86
CIITA-202ENST00000381835 TCRBV4S1A1TA0A5B7 111 aa9.66□□□□□ -0.86
CIITA-202ENST00000381835 IGHV3-23P01764 117 aa9.66□□□□□ -0.86
CIITA-202ENST00000381835 GNG5P63218 68 aa9.66□□□□□ -0.86
CIITA-202ENST00000381835 C19orf54Q5BKX5 351 aa9.66□□□□□ -0.86
CIITA-202ENST00000381835 MRPS16Q9Y3D3 137 aaKnown RBP9.66□□□□□ -0.86
CIITA-202ENST00000381835 IGKV1D-37A0A075B6S9 117 aa9.65□□□□□ -0.86
CIITA-202ENST00000381835 INAFM1C9JVW0 142 aa9.65□□□□□ -0.86
CIITA-202ENST00000381835 RHOGP84095 191 aa9.65□□□□□ -0.86
CIITA-202ENST00000381835 TMEM86BQ8N661 226 aa9.65□□□□□ -0.86
CIITA-202ENST00000381835 ORAOV1Q8WV07 137 aa9.65□□□□□ -0.86
CIITA-202ENST00000381835 FXYD5Q96DB9 178 aa9.65□□□□□ -0.86
CIITA-202ENST00000381835 ESM1Q9NQ30 184 aa9.65□□□□□ -0.86
CIITA-202ENST00000381835 C15orf32Q32M92 178 aa9.65□□□□□ -0.87
CIITA-202ENST00000381835 LINC00305Q7Z4B0 112 aa9.65□□□□□ -0.87
CIITA-202ENST00000381835 THAP8Q8NA92 274 aa9.65□□□□□ -0.87
CIITA-202ENST00000381835 SGK494Q96LW2 274 aa9.65□□□□□ -0.87
CIITA-202ENST00000381835 SLC25A5P05141 298 aaKnown RBP9.64□□□□□ -0.87
CIITA-202ENST00000381835 PPIFP30405 207 aaKnown RBP9.64□□□□□ -0.87
CIITA-202ENST00000381835 PTTG1IPP53801 180 aa9.64□□□□□ -0.87
CIITA-202ENST00000381835 ATP5L2Q7Z4Y8 100 aa9.64□□□□□ -0.87
CIITA-202ENST00000381835 OR2D3Q8NGH3 330 aa9.64□□□□□ -0.87
CIITA-202ENST00000381835 BLNKQ8WV28 456 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms