RNA–Protein interactions for RNA: ENST00000374732.7

USP48-203, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 3,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-203ENST00000374732 LINC01590Q5TEZ4 76 aa6.17□□□□□ -1.42
USP48-203ENST00000374732 PVRIGQ6DKI7 326 aa6.17□□□□□ -1.42
USP48-203ENST00000374732 ZNF843Q8N446 348 aa6.17□□□□□ -1.42
USP48-203ENST00000374732 TSKUQ8WUA8 353 aa6.17□□□□□ -1.42
USP48-203ENST00000374732 SMIM7Q9BQ49 75 aa6.17□□□□□ -1.42
USP48-203ENST00000374732 PCDH15Q96QU1 1955 aa6.17□□□□□ -1.42
USP48-203ENST00000374732 CEP192Q8TEP8 1941 aa6.17□□□□□ -1.42
USP48-203ENST00000374732 IZUMO1RA6ND01 250 aa6.17□□□□□ -1.42
USP48-203ENST00000374732 RBMY1BA6NDE4 496 aaKnown RBP6.17□□□□□ -1.42
USP48-203ENST00000374732 RBMY1EA6NEQ0 496 aaKnown RBP6.17□□□□□ -1.42
USP48-203ENST00000374732 RBMY1DP0C7P1 496 aaKnown RBP6.17□□□□□ -1.42
USP48-203ENST00000374732 RBMY1A1P0DJD3 496 aaKnown RBP6.17□□□□□ -1.42
USP48-203ENST00000374732 MPV17P39210 176 aa6.17□□□□□ -1.42
USP48-203ENST00000374732 NXT2Q9NPJ8 142 aaKnown RBP6.17□□□□□ -1.42
USP48-203ENST00000374732 SERP1Q9Y6X1 66 aa6.17□□□□□ -1.42
USP48-203ENST00000374732 GOLGA4Q13439 2230 aaKnown RBP6.17□□□□□ -1.42
USP48-203ENST00000374732 LINC01548A6NM66 108 aa6.16□□□□□ -1.42
USP48-203ENST00000374732 RPL23P62829 140 aaKnown RBP6.16□□□□□ -1.42
USP48-203ENST00000374732 DEFB133Q30KQ1 61 aa6.16□□□□□ -1.42
USP48-203ENST00000374732 TMEM30BQ3MIR4 351 aa6.16□□□□□ -1.42
USP48-203ENST00000374732 LGALS9CQ6DKI2 356 aa6.16□□□□□ -1.42
USP48-203ENST00000374732 OR8A1Q8NGG7 326 aa6.16□□□□□ -1.42
USP48-203ENST00000374732 TDRD6O60522 2096 aaKnown RBP6.16□□□□□ -1.42
USP48-203ENST00000374732 LAMA3Q16787 3333 aa6.16□□□□□ -1.42
USP48-203ENST00000374732 TRBV7-7A0A0K0K1E9 115 aa6.16□□□□□ -1.42
USP48-203ENST00000374732 PDCD6O75340 191 aa6.16□□□□□ -1.42
USP48-203ENST00000374732 CYP2G1PQ6ZSU1 146 aa6.16□□□□□ -1.42
USP48-203ENST00000374732 CALYQ9NYX4 217 aa6.16□□□□□ -1.42
USP48-203ENST00000374732 LAMTOR3Q9UHA4 124 aa6.16□□□□□ -1.42
USP48-203ENST00000374732 MOB4Q9Y3A3 225 aa6.16□□□□□ -1.42
USP48-203ENST00000374732 C2orf70A6NJV1 201 aa6.15□□□□□ -1.42
USP48-203ENST00000374732 EPM2AB3EWF7 344 aa6.15□□□□□ -1.42
USP48-203ENST00000374732 KTN1-AS1Q86SY8 53 aa6.15□□□□□ -1.42
USP48-203ENST00000374732 PHLDA1Q8WV24 401 aaPredicted RBP6.15□□□□□ -1.42
USP48-203ENST00000374732 TMEM14AQ9Y6G1 99 aa6.15□□□□□ -1.42
USP48-203ENST00000374732 CDH23Q9H251 3354 aa6.15□□□□□ -1.42
USP48-203ENST00000374732 ADAMTS20P59510 1910 aa6.15□□□□□ -1.42
USP48-203ENST00000374732 IGLV3-12A0A075B6K2 115 aa6.15□□□□□ -1.43
USP48-203ENST00000374732 IGKV1D-8A0A087WSZ0 117 aa6.15□□□□□ -1.43
USP48-203ENST00000374732 WI2-2373I1.2A0A1W2PRP0 233 aa6.15□□□□□ -1.43
USP48-203ENST00000374732 F5H697 171 aa6.15□□□□□ -1.43
USP48-203ENST00000374732 BGLAPP02818 100 aa6.15□□□□□ -1.43
USP48-203ENST00000374732 GYPEP15421 78 aa6.15□□□□□ -1.43
USP48-203ENST00000374732 CIRBPQ14011 172 aaKnown RBP6.15□□□□□ -1.43
USP48-203ENST00000374732 TIMM17AQ99595 171 aa6.15□□□□□ -1.43
USP48-203ENST00000374732 ESM1Q9NQ30 184 aa6.15□□□□□ -1.43
USP48-203ENST00000374732 NHP2Q9NX24 153 aaKnown RBP6.15□□□□□ -1.43
USP48-203ENST00000374732 HLA-DQA1P01909 254 aa6.15□□□□□ -1.43
USP48-203ENST00000374732 HLA-DMBP28068 263 aa6.15□□□□□ -1.43
USP48-203ENST00000374732 ZNF117Q03924 483 aa6.15□□□□□ -1.43
USP48-203ENST00000374732 NNATQ16517 81 aa6.15□□□□□ -1.43
USP48-203ENST00000374732 TMEM158Q8WZ71 300 aa6.15□□□□□ -1.43
USP48-203ENST00000374732 ARRDC1-AS1Q9H2J1 176 aa6.15□□□□□ -1.43
USP48-203ENST00000374732 TRBV19A0A075B6N1 114 aa6.14□□□□□ -1.43
USP48-203ENST00000374732 EFNA4P52798 201 aa6.14□□□□□ -1.43
USP48-203ENST00000374732 RPL18Q07020 188 aaKnown RBP6.14□□□□□ -1.43
USP48-203ENST00000374732 DEFB119Q8N690 84 aa6.14□□□□□ -1.43
USP48-203ENST00000374732 Q96M85 177 aa6.14□□□□□ -1.43
USP48-203ENST00000374732 IGKV1D-43A0A0B4J1Z2 117 aa6.14□□□□□ -1.43
USP48-203ENST00000374732 TRBV5-5A0A0J9YX44 114 aa6.14□□□□□ -1.43
USP48-203ENST00000374732 PGPA6NDG6 321 aa6.14□□□□□ -1.43
USP48-203ENST00000374732 LINC01619G3V211 115 aa6.14□□□□□ -1.43
USP48-203ENST00000374732 GP1BBP13224 206 aa6.14□□□□□ -1.43
USP48-203ENST00000374732 HLA-DOBP13765 273 aa6.14□□□□□ -1.43
USP48-203ENST00000374732 FXYD2P54710 66 aa6.14□□□□□ -1.43
USP48-203ENST00000374732 IL1F10Q8WWZ1 152 aa6.14□□□□□ -1.43
USP48-203ENST00000374732 IGLV1-36A0A0B4J1U3 117 aa6.13□□□□□ -1.43
USP48-203ENST00000374732 B3GALT5-AS1P59052 145 aa6.13□□□□□ -1.43
USP48-203ENST00000374732 DAD1P61803 113 aa6.13□□□□□ -1.43
USP48-203ENST00000374732 C1orf140Q5VVS0 124 aa6.13□□□□□ -1.43
USP48-203ENST00000374732 OR10AC1Q8NH08 325 aa6.13□□□□□ -1.43
USP48-203ENST00000374732 CEP290O15078 2479 aa6.13□□□□□ -1.43
USP48-203ENST00000374732 ZFP92A6NM28 416 aa6.13□□□□□ -1.43
USP48-203ENST00000374732 NSUN5P1Q3KNT7 163 aa6.13□□□□□ -1.43
USP48-203ENST00000374732 ZNF286AQ9HBT8 521 aa6.13□□□□□ -1.43
USP48-203ENST00000374732 MED13Q9UHV7 2174 aa6.13□□□□□ -1.43
USP48-203ENST00000374732 EML5Q05BV3 1969 aa6.12□□□□□ -1.43
USP48-203ENST00000374732 TRBV7-6A0A0J9YX20 115 aa6.12□□□□□ -1.43
USP48-203ENST00000374732 PIN1P1O15428 100 aa6.12□□□□□ -1.43
USP48-203ENST00000374732 HOXA3O43365 443 aaPredicted RBP6.12□□□□□ -1.43
USP48-203ENST00000374732 APCSP02743 223 aa6.12□□□□□ -1.43
USP48-203ENST00000374732 SCGB1C2P0DMR2 95 aa6.12□□□□□ -1.43
USP48-203ENST00000374732 ZNF56Q15929 161 aa6.12□□□□□ -1.43
USP48-203ENST00000374732 S100A7L2Q5SY68 101 aa6.12□□□□□ -1.43
USP48-203ENST00000374732 CCL17Q92583 94 aa6.12□□□□□ -1.43
USP48-203ENST00000374732 ZNF524Q96C55 264 aa6.12□□□□□ -1.43
USP48-203ENST00000374732 TRBV5-7A0A0A0MS05 114 aa6.12□□□□□ -1.43
USP48-203ENST00000374732 SLC25A16P16260 332 aa6.12□□□□□ -1.43
USP48-203ENST00000374732 NANOS3P60323 173 aaKnown RBP6.12□□□□□ -1.43
USP48-203ENST00000374732 MARCH3Q86UD3 253 aa6.12□□□□□ -1.43
USP48-203ENST00000374732 TIMM17BO60830 172 aa6.12□□□□□ -1.43
USP48-203ENST00000374732 CD177Q8N6Q3 437 aa6.12□□□□□ -1.43
USP48-203ENST00000374732 IMUPQ9GZP8 106 aa6.12□□□□□ -1.43
USP48-203ENST00000374732 EPDR1Q9UM22 224 aa6.12□□□□□ -1.43
USP48-203ENST00000374732 KMT2BQ9UMN6 2715 aaPredicted RBP6.12□□□□□ -1.43
USP48-203ENST00000374732 CPAMD8Q8IZJ3 1885 aa6.11□□□□□ -1.43
USP48-203ENST00000374732 IGLV3-32A0A0A0MS00 114 aa6.11□□□□□ -1.43
USP48-203ENST00000374732 TRAV17A0A0B4J275 112 aa6.11□□□□□ -1.43
USP48-203ENST00000374732 M0R378 163 aa6.11□□□□□ -1.43
USP48-203ENST00000374732 KLK13Q9UKR3 277 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms