RNA–Protein interactions for RNA: ENST00000368439.5

CKS1B-203, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best) BASIC

Gene CKS1B, Length 912 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-203ENST00000368439 SPART-AS1P0CW21 52 aa13.52□□□□□ -0.25
CKS1B-203ENST00000368439 PET100P0DJ07 73 aa13.52□□□□□ -0.25
CKS1B-203ENST00000368439 RHOBP62745 196 aa13.52□□□□□ -0.25
CKS1B-203ENST00000368439 RRN3P1Q2M238 152 aa13.52□□□□□ -0.25
CKS1B-203ENST00000368439 FAM167A-AS1Q96KT0 104 aa13.52□□□□□ -0.25
CKS1B-203ENST00000368439 ATP5SQ99766 215 aa13.52□□□□□ -0.25
CKS1B-203ENST00000368439 SLC25A2Q9BXI2 301 aa13.52□□□□□ -0.25
CKS1B-203ENST00000368439 MBD2Q9UBB5 411 aa13.52□□□□□ -0.25
CKS1B-203ENST00000368439 PYYP10082 97 aa13.51□□□□□ -0.25
CKS1B-203ENST00000368439 RPL12P30050 165 aaKnown RBP13.51□□□□□ -0.25
CKS1B-203ENST00000368439 FAM222AQ5U5X8 452 aa13.51□□□□□ -0.25
CKS1B-203ENST00000368439 MIR17HGQ75NE6 70 aa13.51□□□□□ -0.25
CKS1B-203ENST00000368439 YTHDF2Q9Y5A9 579 aaKnown RBP13.51□□□□□ -0.25
CKS1B-203ENST00000368439 IGHV4-4A0A075B6R2 117 aa13.5□□□□□ -0.25
CKS1B-203ENST00000368439 DEFB131BA0A096LNP1 70 aa13.5□□□□□ -0.25
CKS1B-203ENST00000368439 ZNF705GA8MUZ8 300 aaPredicted RBP13.5□□□□□ -0.25
CKS1B-203ENST00000368439 HIST1H1EP10412 219 aaKnown RBP13.5□□□□□ -0.25
CKS1B-203ENST00000368439 TMEM208Q9BTX3 173 aa13.5□□□□□ -0.25
CKS1B-203ENST00000368439 PLA2G2EQ9NZK7 142 aa13.5□□□□□ -0.25
CKS1B-203ENST00000368439 PLAC8L1A1L4L8 177 aa13.49□□□□□ -0.25
CKS1B-203ENST00000368439 CDKN1BP46527 198 aa13.49□□□□□ -0.25
CKS1B-203ENST00000368439 KIR3DS1Q14943 382 aa13.49□□□□□ -0.25
CKS1B-203ENST00000368439 RPP25LQ8N5L8 163 aaKnown RBP13.49□□□□□ -0.25
CKS1B-203ENST00000368439 PARD6GQ9BYG4 376 aaPredicted RBP13.49□□□□□ -0.25
CKS1B-203ENST00000368439 WFDC1Q9HC57 220 aa13.49□□□□□ -0.25
CKS1B-203ENST00000368439 TEX48A0A1B0GUV7 120 aa13.48□□□□□ -0.25
CKS1B-203ENST00000368439 NPIPB6E9PJ23 425 aa13.48□□□□□ -0.25
CKS1B-203ENST00000368439 M0R3E3 92 aa13.48□□□□□ -0.25
CKS1B-203ENST00000368439 AZU1P20160 251 aa13.48□□□□□ -0.25
CKS1B-203ENST00000368439 TSPOP30536 169 aa13.48□□□□□ -0.25
CKS1B-203ENST00000368439 PDE6HQ13956 83 aa13.48□□□□□ -0.25
CKS1B-203ENST00000368439 OXA1LQ15070 435 aa13.48□□□□□ -0.25
CKS1B-203ENST00000368439 FCN2Q15485 313 aa13.48□□□□□ -0.25
CKS1B-203ENST00000368439 OR10J6PQ8NGY7 276 aa13.48□□□□□ -0.25
CKS1B-203ENST00000368439 MRPL53Q96EL3 112 aaKnown RBP13.48□□□□□ -0.25
CKS1B-203ENST00000368439 NIPSNAP3BQ9BS92 247 aa13.48□□□□□ -0.25
CKS1B-203ENST00000368439 SMIM3Q9BZL3 60 aa13.48□□□□□ -0.25
CKS1B-203ENST00000368439 KCNIP2Q9NS61 270 aa13.48□□□□□ -0.25
CKS1B-203ENST00000368439 PPP1R14DQ9NXH3 145 aa13.48□□□□□ -0.25
CKS1B-203ENST00000368439 FRAS1Q86XX4 4008 aa13.47□□□□□ -0.25
CKS1B-203ENST00000368439 C17orf112F2Z3M2 114 aa13.47□□□□□ -0.25
CKS1B-203ENST00000368439 CT45A10P0DMU9 189 aa13.47□□□□□ -0.25
CKS1B-203ENST00000368439 TMEM256Q8N2U0 113 aa13.47□□□□□ -0.25
CKS1B-203ENST00000368439 MRPL32Q9BYC8 188 aaKnown RBP13.47□□□□□ -0.25
CKS1B-203ENST00000368439 FUT9Q9Y231 359 aa13.47□□□□□ -0.25
CKS1B-203ENST00000368439 FXYD5Q96DB9 178 aa13.46□□□□□ -0.25
CKS1B-203ENST00000368439 ZNF503Q96F45 646 aa13.46□□□□□ -0.25
CKS1B-203ENST00000368439 ODF3Q96PU9 254 aa13.46□□□□□ -0.25
CKS1B-203ENST00000368439 TAS2R60P59551 318 aa13.45□□□□□ -0.26
CKS1B-203ENST00000368439 GFI1BQ5VTD9 330 aa13.45□□□□□ -0.26
CKS1B-203ENST00000368439 EXOC3-AS1Q8N2X6 119 aa13.45□□□□□ -0.26
CKS1B-203ENST00000368439 BLNKQ8WV28 456 aa13.45□□□□□ -0.26
CKS1B-203ENST00000368439 LINC01587Q99440 93 aa13.45□□□□□ -0.26
CKS1B-203ENST00000368439 OR51M1Q9H341 326 aa13.45□□□□□ -0.26
CKS1B-203ENST00000368439 TIMM9Q9Y5J7 89 aa13.45□□□□□ -0.26
CKS1B-203ENST00000368439 IFNA5P01569 189 aa13.44□□□□□ -0.26
CKS1B-203ENST00000368439 NBEAP1P0C6P0 100 aa13.44□□□□□ -0.26
CKS1B-203ENST00000368439 FFAR4Q5NUL3 377 aa13.44□□□□□ -0.26
CKS1B-203ENST00000368439 C20orf144Q9BQM9 153 aa13.44□□□□□ -0.26
CKS1B-203ENST00000368439 MED28Q9H204 178 aa13.44□□□□□ -0.26
CKS1B-203ENST00000368439 PRELID1Q9Y255 219 aa13.44□□□□□ -0.26
CKS1B-203ENST00000368439 ERCC8Q13216 396 aa13.43□□□□□ -0.26
CKS1B-203ENST00000368439 Q5BKY6 102 aa13.43□□□□□ -0.26
CKS1B-203ENST00000368439 SCGB1C1Q8TD33 95 aa13.43□□□□□ -0.26
CKS1B-203ENST00000368439 FAM19A4Q96LR4 140 aa13.43□□□□□ -0.26
CKS1B-203ENST00000368439 PAXXQ9BUH6 204 aa13.43□□□□□ -0.26
CKS1B-203ENST00000368439 LYRM9A8MSI8 78 aa13.42□□□□□ -0.26
CKS1B-203ENST00000368439 H7BYZ3 331 aa13.42□□□□□ -0.26
CKS1B-203ENST00000368439 OR10J4P0C629 311 aa13.42□□□□□ -0.26
CKS1B-203ENST00000368439 ICAM4Q14773 271 aa13.42□□□□□ -0.26
CKS1B-203ENST00000368439 RNASE8Q8TDE3 154 aaKnown RBP13.42□□□□□ -0.26
CKS1B-203ENST00000368439 RNF141Q8WVD5 230 aa13.42□□□□□ -0.26
CKS1B-203ENST00000368439 AGPAT4-IT1Q9H0P7 198 aa13.42□□□□□ -0.26
CKS1B-203ENST00000368439 LEPP41159 167 aa13.41□□□□□ -0.26
CKS1B-203ENST00000368439 DAD1P61803 113 aa13.41□□□□□ -0.26
CKS1B-203ENST00000368439 PHYHIPLQ96FC7 376 aa13.41□□□□□ -0.26
CKS1B-203ENST00000368439 C16orf74Q96GX8 76 aa13.41□□□□□ -0.26
CKS1B-203ENST00000368439 NDUFAF3Q9BU61 184 aa13.41□□□□□ -0.26
CKS1B-203ENST00000368439 AAMDCQ9H7C9 122 aa13.41□□□□□ -0.26
CKS1B-203ENST00000368439 C9orf47Q6ZRZ4 202 aa13.4□□□□□ -0.26
CKS1B-203ENST00000368439 FAM210BQ96KR6 192 aa13.4□□□□□ -0.26
CKS1B-203ENST00000368439 LINC00477Q96M19 166 aa13.4□□□□□ -0.26
CKS1B-203ENST00000368439 AQP10Q96PS8 301 aa13.4□□□□□ -0.26
CKS1B-203ENST00000368439 DNAH2Q9P225 4427 aa13.4□□□□□ -0.26
CKS1B-203ENST00000368439 KLLNB2CW77 178 aa13.39□□□□□ -0.27
CKS1B-203ENST00000368439 J3KRW8 73 aa13.39□□□□□ -0.27
CKS1B-203ENST00000368439 OR7C2O60412 319 aa13.39□□□□□ -0.27
CKS1B-203ENST00000368439 EIF3GO75821 320 aaKnown RBP eCLIP13.39□□□□□ -0.272e-6■■■■■ 29.6
CKS1B-203ENST00000368439 GIPP09681 153 aaPredicted RBP13.39□□□□□ -0.27
CKS1B-203ENST00000368439 HTN1P15515 57 aa13.39□□□□□ -0.27
CKS1B-203ENST00000368439 FAM122CQ6P4D5 195 aa13.39□□□□□ -0.27
CKS1B-203ENST00000368439 ZNF493Q6ZR52 646 aa13.39□□□□□ -0.27
CKS1B-203ENST00000368439 TMEM263Q8WUH6 116 aaKnown RBP13.39□□□□□ -0.27
CKS1B-203ENST00000368439 IGKV2-40A0A087WW87 121 aaPredicted RBP13.38□□□□□ -0.27
CKS1B-203ENST00000368439 TRAV12-3A0A0B4J271 114 aa13.38□□□□□ -0.27
CKS1B-203ENST00000368439 IGKV2D-40P01614 121 aaPredicted RBP13.38□□□□□ -0.27
CKS1B-203ENST00000368439 HTN3P15516 51 aa13.38□□□□□ -0.27
CKS1B-203ENST00000368439 CRISP2P16562 243 aa13.38□□□□□ -0.27
CKS1B-203ENST00000368439 ASB13Q8WXK3 278 aa13.38□□□□□ -0.27
CKS1B-203ENST00000368439 VGLL1Q99990 258 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms