RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 LHFPL4Q7Z7J7 247 aa12.52□□□□□ -0.41
HMGA1-202ENST00000347617 SMPXQ9UHP9 88 aa12.52□□□□□ -0.41
HMGA1-202ENST00000347617 TRAV8-1A0A0A6YYK1 113 aa12.51□□□□□ -0.41
HMGA1-202ENST00000347617 LINC01546A6NGU7 62 aa12.51□□□□□ -0.41
HMGA1-202ENST00000347617 D6R8Y8 96 aa12.51□□□□□ -0.41
HMGA1-202ENST00000347617 S100A7P31151 101 aa12.51□□□□□ -0.41
HMGA1-202ENST00000347617 PAX8Q06710 450 aa12.51□□□□□ -0.41
HMGA1-202ENST00000347617 COX8CQ7Z4L0 72 aa12.51□□□□□ -0.41
HMGA1-202ENST00000347617 SHANK2-AS3Q9BTD1 123 aa12.51□□□□□ -0.41
HMGA1-202ENST00000347617 ZNRD1Q9P1U0 126 aa12.51□□□□□ -0.41
HMGA1-202ENST00000347617 HILPDAQ9Y5L2 63 aa12.51□□□□□ -0.41
HMGA1-202ENST00000347617 INSIG2Q9Y5U4 225 aa12.51□□□□□ -0.41
HMGA1-202ENST00000347617 ARFGEF3Q5TH69 2177 aa12.51□□□□□ -0.41
HMGA1-202ENST00000347617 ANKHD1Q8IWZ3 2542 aaKnown RBP12.51□□□□□ -0.41
HMGA1-202ENST00000347617 ZNF785A8K8V0 405 aa12.51□□□□□ -0.41
HMGA1-202ENST00000347617 GNLYP22749 145 aa12.51□□□□□ -0.41
HMGA1-202ENST00000347617 LYZP61626 148 aa12.51□□□□□ -0.41
HMGA1-202ENST00000347617 FOXE3Q13461 319 aa12.51□□□□□ -0.41
HMGA1-202ENST00000347617 PDE6HQ13956 83 aa12.51□□□□□ -0.41
HMGA1-202ENST00000347617 MRGPRG-AS1Q2M3A8 158 aa12.51□□□□□ -0.41
HMGA1-202ENST00000347617 SIGMAR1Q99720 223 aa12.51□□□□□ -0.41
HMGA1-202ENST00000347617 RAB1BQ9H0U4 201 aa12.51□□□□□ -0.41
HMGA1-202ENST00000347617 PKD1L2Q7Z442 2459 aa12.5□□□□□ -0.41
HMGA1-202ENST00000347617 NDUFB3O43676 98 aa12.5□□□□□ -0.41
HMGA1-202ENST00000347617 H3BRN7 92 aa12.49□□□□□ -0.41
HMGA1-202ENST00000347617 GOSR1O95249 250 aa12.49□□□□□ -0.41
HMGA1-202ENST00000347617 CRYGBP07316 175 aa12.49□□□□□ -0.41
HMGA1-202ENST00000347617 SRSF2Q01130 221 aaKnown RBP12.49□□□□□ -0.41
HMGA1-202ENST00000347617 TAL2Q16559 108 aa12.49□□□□□ -0.41
HMGA1-202ENST00000347617 TMEM200BQ69YZ2 307 aa12.49□□□□□ -0.41
HMGA1-202ENST00000347617 HCP5Q6MZN7 132 aa12.49□□□□□ -0.41
HMGA1-202ENST00000347617 SIGLEC15Q6ZMC9 328 aa12.49□□□□□ -0.41
HMGA1-202ENST00000347617 DTX2Q86UW9 622 aa12.49□□□□□ -0.41
HMGA1-202ENST00000347617 EXOC3-AS1Q8N2X6 119 aa12.49□□□□□ -0.41
HMGA1-202ENST00000347617 RASL11BQ9BPW5 248 aa12.49□□□□□ -0.41
HMGA1-202ENST00000347617 ZMAT4Q9H898 229 aa12.49□□□□□ -0.41
HMGA1-202ENST00000347617 ITPR1Q14643 2758 aa12.49□□□□□ -0.41
HMGA1-202ENST00000347617 F8W1H4 67 aa12.48□□□□□ -0.41
HMGA1-202ENST00000347617 C11orf71Q6IPW1 123 aa12.48□□□□□ -0.41
HMGA1-202ENST00000347617 RAB37Q96AX2 223 aa12.48□□□□□ -0.41
HMGA1-202ENST00000347617 VGLL1Q99990 258 aa12.48□□□□□ -0.41
HMGA1-202ENST00000347617 ROS1P08922 2347 aa12.48□□□□□ -0.41
HMGA1-202ENST00000347617 A0A1B0GV72 72 aa12.48□□□□□ -0.41
HMGA1-202ENST00000347617 H3BTX0 84 aa12.48□□□□□ -0.41
HMGA1-202ENST00000347617 NDUFS7O75251 213 aa12.48□□□□□ -0.41
HMGA1-202ENST00000347617 NMUP48645 174 aa12.48□□□□□ -0.41
HMGA1-202ENST00000347617 MRPL51Q4U2R6 128 aaKnown RBP12.48□□□□□ -0.41
HMGA1-202ENST00000347617 CLEC2AQ6UVW9 174 aa12.48□□□□□ -0.41
HMGA1-202ENST00000347617 LYZL1Q6UWQ5 148 aa12.48□□□□□ -0.41
HMGA1-202ENST00000347617 COL6A6A6NMZ7 2263 aa12.48□□□□□ -0.41
HMGA1-202ENST00000347617 TPRP12270 2363 aaKnown RBP12.47□□□□□ -0.41
HMGA1-202ENST00000347617 CCL3L1P16619 93 aa12.47□□□□□ -0.41
HMGA1-202ENST00000347617 EVI2AP22794 236 aa12.47□□□□□ -0.41
HMGA1-202ENST00000347617 FOXI2Q6ZQN5 318 aa12.47□□□□□ -0.41
HMGA1-202ENST00000347617 RITA1Q96K30 269 aa12.47□□□□□ -0.41
HMGA1-202ENST00000347617 TM2D2Q9BX73 214 aa12.47□□□□□ -0.41
HMGA1-202ENST00000347617 MAP1LC3AQ9H492 121 aa12.47□□□□□ -0.41
HMGA1-202ENST00000347617 AAMDCQ9H7C9 122 aa12.47□□□□□ -0.41
HMGA1-202ENST00000347617 NAV3Q8IVL0 2385 aa12.47□□□□□ -0.41
HMGA1-202ENST00000347617 LOC389332A0A1B0GUA5 103 aa12.46□□□□□ -0.41
HMGA1-202ENST00000347617 ATP5LO75964 103 aa12.46□□□□□ -0.41
HMGA1-202ENST00000347617 FAM106CPP0CH98 169 aa12.46□□□□□ -0.41
HMGA1-202ENST00000347617 CKS2P33552 79 aa12.46□□□□□ -0.41
HMGA1-202ENST00000347617 RPL24P83731 157 aaKnown RBP12.46□□□□□ -0.41
HMGA1-202ENST00000347617 LOXL1Q08397 574 aaPredicted RBP12.46□□□□□ -0.41
HMGA1-202ENST00000347617 CD300EQ496F6 205 aaPredicted RBP12.46□□□□□ -0.41
HMGA1-202ENST00000347617 FAM106AQ4KMX7 169 aa12.46□□□□□ -0.41
HMGA1-202ENST00000347617 NXT2Q9NPJ8 142 aaKnown RBP12.46□□□□□ -0.41
HMGA1-202ENST00000347617 NBASA2RRP1 2371 aa12.46□□□□□ -0.42
HMGA1-202ENST00000347617 CRIP1P50238 77 aa12.46□□□□□ -0.42
HMGA1-202ENST00000347617 PCP2Q8IVA1 136 aa12.46□□□□□ -0.42
HMGA1-202ENST00000347617 BCL6BQ8N143 479 aaPredicted RBP12.46□□□□□ -0.42
HMGA1-202ENST00000347617 RNF5Q99942 180 aa12.46□□□□□ -0.42
HMGA1-202ENST00000347617 TPSG1Q9NRR2 321 aa12.46□□□□□ -0.42
HMGA1-202ENST00000347617 SIGLEC9Q9Y336 463 aa12.46□□□□□ -0.42
HMGA1-202ENST00000347617 HIVEP3Q5T1R4 2406 aa12.45□□□□□ -0.42
HMGA1-202ENST00000347617 I3L2K1 104 aa12.45□□□□□ -0.42
HMGA1-202ENST00000347617 PPIAL4GP0DN37 164 aa12.45□□□□□ -0.42
HMGA1-202ENST00000347617 FCER1GP30273 86 aa12.45□□□□□ -0.42
HMGA1-202ENST00000347617 BMI1P35226 326 aa12.45□□□□□ -0.42
HMGA1-202ENST00000347617 RUSC1-AS1Q66K80 236 aa12.45□□□□□ -0.42
HMGA1-202ENST00000347617 LYPD2Q6UXB3 125 aa12.45□□□□□ -0.42
HMGA1-202ENST00000347617 AMN1Q8IY45 258 aa12.45□□□□□ -0.42
HMGA1-202ENST00000347617 CHAC1Q9BUX1 264 aa12.45□□□□□ -0.42
HMGA1-202ENST00000347617 PPIAL4CA0A0B4J2A2 164 aa12.44□□□□□ -0.42
HMGA1-202ENST00000347617 TEX48A0A1B0GUV7 120 aa12.44□□□□□ -0.42
HMGA1-202ENST00000347617 ENSAO43768 121 aaKnown RBP12.44□□□□□ -0.42
HMGA1-202ENST00000347617 FCN3O75636 299 aa12.44□□□□□ -0.42
HMGA1-202ENST00000347617 GCSHP23434 173 aa12.44□□□□□ -0.42
HMGA1-202ENST00000347617 DLX6P56179 175 aa12.44□□□□□ -0.42
HMGA1-202ENST00000347617 TMEM155Q4W5P6 130 aa12.44□□□□□ -0.42
HMGA1-202ENST00000347617 SPATA25Q9BR10 227 aa12.44□□□□□ -0.42
HMGA1-202ENST00000347617 TPPP3Q9BW30 176 aa12.44□□□□□ -0.42
HMGA1-202ENST00000347617 CTSZQ9UBR2 303 aa12.44□□□□□ -0.42
HMGA1-202ENST00000347617 PKDREJQ9NTG1 2253 aa12.44□□□□□ -0.42
HMGA1-202ENST00000347617 TEX22C9J3V5 150 aa12.43□□□□□ -0.42
HMGA1-202ENST00000347617 E9PLD3 99 aa12.43□□□□□ -0.42
HMGA1-202ENST00000347617 SH2D1AO60880 128 aa12.43□□□□□ -0.42
HMGA1-202ENST00000347617 SVIPQ8NHG7 77 aa12.43□□□□□ -0.42
HMGA1-202ENST00000347617 PHLDA1Q8WV24 401 aaPredicted RBP12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms