RNA–Protein interactions for RNA: ENST00000345512.7

PTPRU-201, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRU, Length 4,470 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-201ENST00000345512 CGB3P0DN86 165 aa12.38□□□□□ -0.43
PTPRU-201ENST00000345512 CGB7P0DN87 165 aa12.38□□□□□ -0.43
PTPRU-201ENST00000345512 OCIAD2Q56VL3 154 aa12.38□□□□□ -0.43
PTPRU-201ENST00000345512 Q8N7P7 452 aa12.38□□□□□ -0.43
PTPRU-201ENST00000345512 SEM1Q6ZVN7 128 aa12.37□□□□□ -0.43
PTPRU-201ENST00000345512 SMAD7O15105 426 aaKnown RBP12.37□□□□□ -0.43
PTPRU-201ENST00000345512 SP5Q6BEB4 398 aaPredicted RBP12.37□□□□□ -0.43
PTPRU-201ENST00000345512 NEU4Q8WWR8 484 aaPredicted RBP12.37□□□□□ -0.43
PTPRU-201ENST00000345512 COL5A1P20908 1838 aaPredicted RBP12.37□□□□□ -0.43
PTPRU-201ENST00000345512 H7C2G1 150 aa12.37□□□□□ -0.43
PTPRU-201ENST00000345512 FAM74A4Q5TZK3 123 aa12.37□□□□□ -0.43
PTPRU-201ENST00000345512 OR5A1Q8NGJ0 315 aa12.37□□□□□ -0.43
PTPRU-201ENST00000345512 GTSF1Q8WW33 167 aa12.37□□□□□ -0.43
PTPRU-201ENST00000345512 TMEM14CQ9P0S9 112 aa12.37□□□□□ -0.43
PTPRU-201ENST00000345512 COX8AP10176 69 aa12.37□□□□□ -0.43
PTPRU-201ENST00000345512 PDE6HQ13956 83 aa12.37□□□□□ -0.43
PTPRU-201ENST00000345512 VKORC1Q9BQB6 163 aa12.37□□□□□ -0.43
PTPRU-201ENST00000345512 NAV3Q8IVL0 2385 aa12.36□□□□□ -0.43
PTPRU-201ENST00000345512 ZC2HC1BQ5TFG8 222 aa12.36□□□□□ -0.43
PTPRU-201ENST00000345512 TMEM190Q8WZ59 177 aa12.36□□□□□ -0.43
PTPRU-201ENST00000345512 MRPL16Q9NX20 251 aaKnown RBP12.36□□□□□ -0.43
PTPRU-201ENST00000345512 EXPH5Q8NEV8 1989 aa12.36□□□□□ -0.43
PTPRU-201ENST00000345512 ASIPP42127 132 aa12.36□□□□□ -0.43
PTPRU-201ENST00000345512 SIGLEC8Q9NYZ4 499 aa12.36□□□□□ -0.43
PTPRU-201ENST00000345512 GP9P14770 177 aa12.36□□□□□ -0.43
PTPRU-201ENST00000345512 ID1P41134 155 aa12.36□□□□□ -0.43
PTPRU-201ENST00000345512 SFTA2Q6UW10 78 aa12.36□□□□□ -0.43
PTPRU-201ENST00000345512 RAXQ9Y2V3 346 aa12.36□□□□□ -0.43
PTPRU-201ENST00000345512 KIAA1549Q9HCM3 1950 aa12.36□□□□□ -0.43
PTPRU-201ENST00000345512 SPG11Q96JI7 2443 aa12.36□□□□□ -0.43
PTPRU-201ENST00000345512 IGFL3Q6UXB1 125 aa12.35□□□□□ -0.43
PTPRU-201ENST00000345512 VMO1Q7Z5L0 202 aa12.35□□□□□ -0.43
PTPRU-201ENST00000345512 LINC00527Q9UJ94 153 aa12.35□□□□□ -0.43
PTPRU-201ENST00000345512 A0A1B0GWB2 263 aa12.35□□□□□ -0.43
PTPRU-201ENST00000345512 SRSF1Q07955 248 aaKnown RBP eCLIP12.35□□□□□ -0.43
PTPRU-201ENST00000345512 IGFL2Q6UWQ7 119 aa12.35□□□□□ -0.43
PTPRU-201ENST00000345512 TMEM158Q8WZ71 300 aa12.35□□□□□ -0.43
PTPRU-201ENST00000345512 ERCC8Q13216 396 aa12.35□□□□□ -0.43
PTPRU-201ENST00000345512 MRPL51Q4U2R6 128 aaKnown RBP12.35□□□□□ -0.43
PTPRU-201ENST00000345512 ZNF747Q9BV97 191 aa12.35□□□□□ -0.43
PTPRU-201ENST00000345512 FAM120AOSQ5T036 256 aa12.34□□□□□ -0.43
PTPRU-201ENST00000345512 PRSS57Q6UWY2 283 aa12.34□□□□□ -0.43
PTPRU-201ENST00000345512 GLMPQ8WWB7 406 aa12.34□□□□□ -0.43
PTPRU-201ENST00000345512 KIR2DL4Q99706 377 aa12.34□□□□□ -0.43
PTPRU-201ENST00000345512 SRSF8Q9BRL6 282 aaKnown RBP12.34□□□□□ -0.43
PTPRU-201ENST00000345512 NCKAP5O14513 1909 aa12.34□□□□□ -0.43
PTPRU-201ENST00000345512 H3BRN7 92 aa12.34□□□□□ -0.43
PTPRU-201ENST00000345512 TMEM170BQ5T4T1 132 aa12.34□□□□□ -0.43
PTPRU-201ENST00000345512 ARL6IP6Q8N6S5 226 aa12.34□□□□□ -0.43
PTPRU-201ENST00000345512 IGKV3-20P01619 116 aa12.34□□□□□ -0.43
PTPRU-201ENST00000345512 IGHV3-11P01762 117 aa12.34□□□□□ -0.43
PTPRU-201ENST00000345512 FAM159AQ6UWV7 190 aa12.34□□□□□ -0.43
PTPRU-201ENST00000345512 RNASE8Q8TDE3 154 aaKnown RBP12.34□□□□□ -0.43
PTPRU-201ENST00000345512 APOMO95445 188 aa12.33□□□□□ -0.43
PTPRU-201ENST00000345512 ZNF491Q8N8L2 437 aa12.33□□□□□ -0.43
PTPRU-201ENST00000345512 NDUFB8O95169 186 aa12.33□□□□□ -0.44
PTPRU-201ENST00000345512 GDF5OSQ5U4N7 250 aa12.33□□□□□ -0.44
PTPRU-201ENST00000345512 ZNF479Q96JC4 524 aa12.33□□□□□ -0.44
PTPRU-201ENST00000345512 RNF114Q9Y508 228 aa12.33□□□□□ -0.44
PTPRU-201ENST00000345512 PRR30Q53SZ7 412 aaPredicted RBP12.33□□□□□ -0.44
PTPRU-201ENST00000345512 PRR25Q96S07 402 aa12.33□□□□□ -0.44
PTPRU-201ENST00000345512 OTOGLQ3ZCN5 2332 aa12.33□□□□□ -0.44
PTPRU-201ENST00000345512 K7EM74 188 aa12.33□□□□□ -0.44
PTPRU-201ENST00000345512 TNFRSF6BO95407 300 aa12.33□□□□□ -0.44
PTPRU-201ENST00000345512 ZNF562Q6V9R5 426 aa12.33□□□□□ -0.44
PTPRU-201ENST00000345512 THBDP07204 575 aa12.32□□□□□ -0.44
PTPRU-201ENST00000345512 RNASE4P34096 147 aaKnown RBP12.32□□□□□ -0.44
PTPRU-201ENST00000345512 LAGE3Q14657 143 aa12.32□□□□□ -0.44
PTPRU-201ENST00000345512 KAAG1Q9UBP8 84 aa12.32□□□□□ -0.44
PTPRU-201ENST00000345512 SMPXQ9UHP9 88 aa12.32□□□□□ -0.44
PTPRU-201ENST00000345512 KLF12Q9Y4X4 402 aa12.32□□□□□ -0.44
PTPRU-201ENST00000345512 NPYP01303 97 aa12.32□□□□□ -0.44
PTPRU-201ENST00000345512 PRSS33Q8NF86 280 aa12.32□□□□□ -0.44
PTPRU-201ENST00000345512 TNRC6AQ8NDV7 1962 aaKnown RBP12.32□□□□□ -0.44
PTPRU-201ENST00000345512 IGHV2-70DA0A0C4DH43 119 aa12.31□□□□□ -0.44
PTPRU-201ENST00000345512 C2orf70A6NJV1 201 aa12.31□□□□□ -0.44
PTPRU-201ENST00000345512 IGKV1-17P01599 117 aa12.31□□□□□ -0.44
PTPRU-201ENST00000345512 IGKV1D-37A0A075B6S9 117 aa12.31□□□□□ -0.44
PTPRU-201ENST00000345512 NDPQ00604 133 aa12.31□□□□□ -0.44
PTPRU-201ENST00000345512 DGAT2L7PQ6IED9 249 aa12.31□□□□□ -0.44
PTPRU-201ENST00000345512 DEFB125Q8N687 156 aa12.31□□□□□ -0.44
PTPRU-201ENST00000345512 ZNF418Q8TF45 676 aaPredicted RBP12.31□□□□□ -0.44
PTPRU-201ENST00000345512 RNF182Q8N6D2 247 aa12.31□□□□□ -0.44
PTPRU-201ENST00000345512 IGFBPL1Q8WX77 278 aa12.31□□□□□ -0.44
PTPRU-201ENST00000345512 LINC00322Q6ZN03 302 aaPredicted RBP12.31□□□□□ -0.44
PTPRU-201ENST00000345512 IGLV2-23P01705 113 aa12.3□□□□□ -0.44
PTPRU-201ENST00000345512 LGALS3P17931 250 aaKnown RBP12.3□□□□□ -0.44
PTPRU-201ENST00000345512 LINC00310P59036 64 aa12.3□□□□□ -0.44
PTPRU-201ENST00000345512 LGALS9BQ3B8N2 356 aa12.3□□□□□ -0.44
PTPRU-201ENST00000345512 LGALS9CQ6DKI2 356 aa12.3□□□□□ -0.44
PTPRU-201ENST00000345512 C8orf31Q8N9H6 132 aa12.3□□□□□ -0.44
PTPRU-201ENST00000345512 PRSS2P07478 247 aa12.3□□□□□ -0.44
PTPRU-201ENST00000345512 PRTN3P24158 256 aa12.3□□□□□ -0.44
PTPRU-201ENST00000345512 ZNF56Q15929 161 aa12.3□□□□□ -0.44
PTPRU-201ENST00000345512 C1orf159Q96HA4 380 aa12.3□□□□□ -0.44
PTPRU-201ENST00000345512 UCNP55089 124 aa12.3□□□□□ -0.44
PTPRU-201ENST00000345512 JMJD8Q96S16 334 aa12.3□□□□□ -0.44
PTPRU-201ENST00000345512 DYSFO75923 2080 aa12.3□□□□□ -0.44
PTPRU-201ENST00000345512 TANC2Q9HCD6 1990 aa12.3□□□□□ -0.44
PTPRU-201ENST00000345512 SAMD13Q5VXD3 122 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms