RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 PAX8Q06710 450 aa3.25□□□□□ -1.89
NEDD4-201ENST00000338963 GUSBP11Q6P575 273 aa3.25□□□□□ -1.89
NEDD4-201ENST00000338963 ZNF826PQ6ZT77 177 aa3.25□□□□□ -1.89
NEDD4-201ENST00000338963 PRNTQ86SH4 94 aa3.25□□□□□ -1.89
NEDD4-201ENST00000338963 TMEM263Q8WUH6 116 aaKnown RBP3.25□□□□□ -1.89
NEDD4-201ENST00000338963 FXYD5Q96DB9 178 aa3.25□□□□□ -1.89
NEDD4-201ENST00000338963 ICOSQ9Y6W8 199 aa3.25□□□□□ -1.89
NEDD4-201ENST00000338963 RALGAPA2Q2PPJ7 1873 aa3.25□□□□□ -1.89
NEDD4-201ENST00000338963 BAZ2BQ9UIF8 2168 aaKnown RBP3.25□□□□□ -1.89
NEDD4-201ENST00000338963 A0A0J9YXY3 114 aa3.25□□□□□ -1.89
NEDD4-201ENST00000338963 LINC00473A8K010 186 aa3.25□□□□□ -1.89
NEDD4-201ENST00000338963 DEFA4P12838 97 aa3.25□□□□□ -1.89
NEDD4-201ENST00000338963 MAPKAPK5-AS1Q8N8E1 139 aa3.25□□□□□ -1.89
NEDD4-201ENST00000338963 BTAF1O14981 1849 aa3.25□□□□□ -1.89
NEDD4-201ENST00000338963 COL11A1P12107 1806 aaPredicted RBP3.25□□□□□ -1.89
NEDD4-201ENST00000338963 DICER1Q9UPY3 1922 aaKnown RBP3.25□□□□□ -1.89
NEDD4-201ENST00000338963 EPM2AB3EWF7 344 aa3.25□□□□□ -1.89
NEDD4-201ENST00000338963 ADM5C9JUS6 153 aa3.25□□□□□ -1.89
NEDD4-201ENST00000338963 C2orf48Q96LS8 159 aa3.25□□□□□ -1.89
NEDD4-201ENST00000338963 SLC25A15Q9Y619 301 aa3.25□□□□□ -1.89
NEDD4-201ENST00000338963 PARP14Q460N5 1801 aa3.25□□□□□ -1.89
NEDD4-201ENST00000338963 ITGB4P16144 1822 aa3.25□□□□□ -1.89
NEDD4-201ENST00000338963 TRBV7-6A0A0J9YX20 115 aa3.25□□□□□ -1.89
NEDD4-201ENST00000338963 FAM167A-AS1Q96KT0 104 aa3.25□□□□□ -1.89
NEDD4-201ENST00000338963 A0A0J9YY99 117 aa3.25□□□□□ -1.89
NEDD4-201ENST00000338963 LEPROTO15243 131 aa3.25□□□□□ -1.89
NEDD4-201ENST00000338963 HIST1H4AP62805 103 aaKnown RBP3.25□□□□□ -1.89
NEDD4-201ENST00000338963 SPINK9Q5DT21 86 aa3.25□□□□□ -1.89
NEDD4-201ENST00000338963 NEXN-AS1Q8NBZ9 246 aa3.25□□□□□ -1.89
NEDD4-201ENST00000338963 FAM19A4Q96LR4 140 aa3.25□□□□□ -1.89
NEDD4-201ENST00000338963 ZNF831Q5JPB2 1677 aa3.24□□□□□ -1.89
NEDD4-201ENST00000338963 C12orf77C9JDV5 145 aa3.24□□□□□ -1.89
NEDD4-201ENST00000338963 M0R381 172 aa3.24□□□□□ -1.89
NEDD4-201ENST00000338963 NDUFS5O43920 106 aa3.24□□□□□ -1.89
NEDD4-201ENST00000338963 GP9P14770 177 aa3.24□□□□□ -1.89
NEDD4-201ENST00000338963 RHOHQ15669 191 aa3.24□□□□□ -1.89
NEDD4-201ENST00000338963 FAM216BQ8N7L0 139 aa3.24□□□□□ -1.89
NEDD4-201ENST00000338963 TTTY13Q9BZ97 58 aa3.24□□□□□ -1.89
NEDD4-201ENST00000338963 DEC1Q9P2X7 70 aa3.24□□□□□ -1.89
NEDD4-201ENST00000338963 KLK5Q9Y337 293 aaPredicted RBP3.24□□□□□ -1.89
NEDD4-201ENST00000338963 LOXP28300 417 aaPredicted RBP3.24□□□□□ -1.89
NEDD4-201ENST00000338963 PIP4P2Q8N4L2 257 aa3.24□□□□□ -1.89
NEDD4-201ENST00000338963 CLPSP04118 112 aa3.24□□□□□ -1.89
NEDD4-201ENST00000338963 MICAL3Q7RTP6 2002 aa3.24□□□□□ -1.89
NEDD4-201ENST00000338963 ZCCHC24Q8N2G6 241 aaKnown RBP3.24□□□□□ -1.89
NEDD4-201ENST00000338963 LINC00311Q8N616 119 aa3.24□□□□□ -1.89
NEDD4-201ENST00000338963 GPHA2Q96T91 129 aa3.24□□□□□ -1.89
NEDD4-201ENST00000338963 IGKV3-11P04433 115 aa3.24□□□□□ -1.89
NEDD4-201ENST00000338963 TOMM6Q96B49 74 aa3.24□□□□□ -1.89
NEDD4-201ENST00000338963 RPUSD1Q9UJJ7 312 aaKnown RBP3.24□□□□□ -1.89
NEDD4-201ENST00000338963 IGLV2-14P01704 120 aa3.24□□□□□ -1.89
NEDD4-201ENST00000338963 TRAV41A0A0B4J266 112 aa3.23□□□□□ -1.89
NEDD4-201ENST00000338963 LILRA5A6NI73 299 aa3.23□□□□□ -1.89
NEDD4-201ENST00000338963 SCRG1O75711 98 aa3.23□□□□□ -1.89
NEDD4-201ENST00000338963 ZNF32P17041 273 aa3.23□□□□□ -1.89
NEDD4-201ENST00000338963 EXOC3-AS1Q8N2X6 119 aa3.23□□□□□ -1.89
NEDD4-201ENST00000338963 HOXB4P17483 251 aaPredicted RBP3.23□□□□□ -1.89
NEDD4-201ENST00000338963 GFERP55789 205 aa3.23□□□□□ -1.89
NEDD4-201ENST00000338963 PRR25Q96S07 402 aa3.23□□□□□ -1.89
NEDD4-201ENST00000338963 HES7Q9BYE0 225 aa3.23□□□□□ -1.89
NEDD4-201ENST00000338963 DAZ1Q9NQZ3 744 aaKnown RBP3.23□□□□□ -1.89
NEDD4-201ENST00000338963 THSD7AQ9UPZ6 1657 aa3.23□□□□□ -1.89
NEDD4-201ENST00000338963 PRSS38A1L453 326 aa3.23□□□□□ -1.89
NEDD4-201ENST00000338963 PF4P02776 101 aa3.23□□□□□ -1.89
NEDD4-201ENST00000338963 PRR15Q8IV56 129 aa3.23□□□□□ -1.89
NEDD4-201ENST00000338963 IGKV3D-11A0A0A0MRZ8 115 aa3.23□□□□□ -1.89
NEDD4-201ENST00000338963 IGHV1-58A0A0C4DH39 117 aa3.23□□□□□ -1.89
NEDD4-201ENST00000338963 TGFBR3LH3BV60 316 aa3.23□□□□□ -1.89
NEDD4-201ENST00000338963 SFTA2Q6UW10 78 aa3.23□□□□□ -1.89
NEDD4-201ENST00000338963 ZNF236Q9UL36 1845 aa3.23□□□□□ -1.89
NEDD4-201ENST00000338963 TMEM223A0PJW6 202 aa3.23□□□□□ -1.89
NEDD4-201ENST00000338963 NBL1P41271 181 aa3.23□□□□□ -1.89
NEDD4-201ENST00000338963 CIRBPQ14011 172 aaKnown RBP3.23□□□□□ -1.89
NEDD4-201ENST00000338963 LY6G5CQ5SRR4 150 aa3.23□□□□□ -1.89
NEDD4-201ENST00000338963 SMIM2Q9BVW6 85 aa3.23□□□□□ -1.89
NEDD4-201ENST00000338963 DOCK5Q9H7D0 1870 aa3.23□□□□□ -1.89
NEDD4-201ENST00000338963 H7C423 109 aa3.23□□□□□ -1.89
NEDD4-201ENST00000338963 VPREB1P12018 145 aa3.23□□□□□ -1.89
NEDD4-201ENST00000338963 RBM3P98179 157 aaKnown RBP3.23□□□□□ -1.89
NEDD4-201ENST00000338963 DAZ2Q13117 558 aaKnown RBP3.23□□□□□ -1.89
NEDD4-201ENST00000338963 COX8CQ7Z4L0 72 aa3.23□□□□□ -1.89
NEDD4-201ENST00000338963 FANCD2OSQ96PS1 177 aa3.23□□□□□ -1.89
NEDD4-201ENST00000338963 TMEM14BQ9NUH8 114 aa3.23□□□□□ -1.89
NEDD4-201ENST00000338963 TEX22C9J3V5 150 aa3.22□□□□□ -1.89
NEDD4-201ENST00000338963 NXPH4O95158 308 aa3.22□□□□□ -1.89
NEDD4-201ENST00000338963 FOXF2Q12947 444 aa3.22□□□□□ -1.89
NEDD4-201ENST00000338963 SOCS3O14543 225 aa3.22□□□□□ -1.89
NEDD4-201ENST00000338963 Q6ZPA2 131 aa3.22□□□□□ -1.89
NEDD4-201ENST00000338963 FLVCR1-AS1Q8TAF5 88 aa3.22□□□□□ -1.89
NEDD4-201ENST00000338963 TIMM17AQ99595 171 aa3.22□□□□□ -1.89
NEDD4-201ENST00000338963 UPK3BQ9BT76 320 aa3.22□□□□□ -1.89
NEDD4-201ENST00000338963 TIMM21Q9BVV7 248 aa3.22□□□□□ -1.89
NEDD4-201ENST00000338963 H3BTX0 84 aa3.22□□□□□ -1.89
NEDD4-201ENST00000338963 H7C2G1 150 aa3.22□□□□□ -1.89
NEDD4-201ENST00000338963 UBE2L6O14933 153 aa3.22□□□□□ -1.89
NEDD4-201ENST00000338963 CFHR3Q02985 330 aa3.22□□□□□ -1.89
NEDD4-201ENST00000338963 DCANP1Q8TF63 244 aa3.22□□□□□ -1.89
NEDD4-201ENST00000338963 MOB4Q9Y3A3 225 aa3.22□□□□□ -1.89
NEDD4-201ENST00000338963 U3KQE9 123 aa3.22□□□□□ -1.89
NEDD4-201ENST00000338963 TRAV8-3A0A0A6YYJ7 113 aa3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms