RNA–Protein interactions for RNA: ENST00000331148.5

CLSTN3-202, Transcript of calsyntenin 3, humanhuman

TSL 1 (best)

Gene CLSTN3, Length 2,288 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-202ENST00000331148 C22orf34Q6ZV56 151 aa14.29□□□□□ -0.12
CLSTN3-202ENST00000331148 RITA1Q96K30 269 aa14.29□□□□□ -0.12
CLSTN3-202ENST00000331148 PRORYQ9H606 182 aa14.29□□□□□ -0.12
CLSTN3-202ENST00000331148 IGHV1-46P01743 117 aa14.29□□□□□ -0.12
CLSTN3-202ENST00000331148 MRPL51Q4U2R6 128 aaKnown RBP14.29□□□□□ -0.12
CLSTN3-202ENST00000331148 HIGD1BQ9P298 99 aa14.29□□□□□ -0.12
CLSTN3-202ENST00000331148 TSSC4Q9Y5U2 329 aaPredicted RBP14.29□□□□□ -0.12
CLSTN3-202ENST00000331148 TRBV19A0A075B6N1 114 aa14.28□□□□□ -0.12
CLSTN3-202ENST00000331148 WI2-2373I1.2A0A1W2PRP0 233 aa14.28□□□□□ -0.12
CLSTN3-202ENST00000331148 BMI1P35226 326 aa14.28□□□□□ -0.12
CLSTN3-202ENST00000331148 PIFOQ8TCI5 191 aa14.28□□□□□ -0.12
CLSTN3-202ENST00000331148 PHLDA1Q8WV24 401 aaPredicted RBP14.28□□□□□ -0.12
CLSTN3-202ENST00000331148 CHAC1Q9BUX1 264 aa14.28□□□□□ -0.12
CLSTN3-202ENST00000331148 IGKV2D-26A0A0A0MRZ7 120 aa14.27□□□□□ -0.12
CLSTN3-202ENST00000331148 K7EQM0 130 aa14.27□□□□□ -0.12
CLSTN3-202ENST00000331148 CD300EQ496F6 205 aaPredicted RBP14.27□□□□□ -0.12
CLSTN3-202ENST00000331148 WFDC3Q8IUB2 231 aa14.27□□□□□ -0.12
CLSTN3-202ENST00000331148 NCOR2Q9Y618 2525 aa14.27□□□□□ -0.12
CLSTN3-202ENST00000331148 A0A1B0GV72 72 aa14.27□□□□□ -0.13
CLSTN3-202ENST00000331148 TEX36Q5VZQ5 186 aa14.27□□□□□ -0.13
CLSTN3-202ENST00000331148 C17orf77Q96MU5 243 aa14.27□□□□□ -0.13
CLSTN3-202ENST00000331148 SPANXB1Q9NS25 103 aaPredicted RBP14.27□□□□□ -0.13
CLSTN3-202ENST00000331148 ARFGEF3Q5TH69 2177 aa14.27□□□□□ -0.13
CLSTN3-202ENST00000331148 GAGE12HA6NDE8 117 aa14.26□□□□□ -0.13
CLSTN3-202ENST00000331148 FBLL1A6NHQ2 334 aaKnown RBP14.26□□□□□ -0.13
CLSTN3-202ENST00000331148 NPYP01303 97 aa14.26□□□□□ -0.13
CLSTN3-202ENST00000331148 RPL27AP46776 148 aaKnown RBP14.26□□□□□ -0.13
CLSTN3-202ENST00000331148 SIGLEC15Q6ZMC9 328 aa14.26□□□□□ -0.13
CLSTN3-202ENST00000331148 FOXI2Q6ZQN5 318 aa14.26□□□□□ -0.13
CLSTN3-202ENST00000331148 TMEM190Q8WZ59 177 aa14.26□□□□□ -0.13
CLSTN3-202ENST00000331148 TMSB15BA0A087X1C1 80 aa14.26□□□□□ -0.13
CLSTN3-202ENST00000331148 SMKR1H3BMG3 65 aa14.26□□□□□ -0.13
CLSTN3-202ENST00000331148 C8orf49Q96NF6 230 aa14.26□□□□□ -0.13
CLSTN3-202ENST00000331148 TTTY13Q9BZ97 58 aa14.26□□□□□ -0.13
CLSTN3-202ENST00000331148 NGBQ9NPG2 151 aa14.26□□□□□ -0.13
CLSTN3-202ENST00000331148 ZZEF1O43149 2961 aa14.25□□□□□ -0.13
CLSTN3-202ENST00000331148 CD40P25942 277 aa14.25□□□□□ -0.13
CLSTN3-202ENST00000331148 CLUHP3Q96NS8 147 aa14.25□□□□□ -0.13
CLSTN3-202ENST00000331148 ATP6V0BQ99437 205 aa14.25□□□□□ -0.13
CLSTN3-202ENST00000331148 TMEM200BQ69YZ2 307 aa14.25□□□□□ -0.13
CLSTN3-202ENST00000331148 TMEM133Q9H2Q1 129 aa14.25□□□□□ -0.13
CLSTN3-202ENST00000331148 TMEM108Q6UXF1 575 aa14.24□□□□□ -0.13
CLSTN3-202ENST00000331148 NHP2Q9NX24 153 aaKnown RBP14.24□□□□□ -0.13
CLSTN3-202ENST00000331148 CHD8Q9HCK8 2581 aa14.24□□□□□ -0.13
CLSTN3-202ENST00000331148 ENSAO43768 121 aaKnown RBP14.24□□□□□ -0.13
CLSTN3-202ENST00000331148 CKS2P33552 79 aa14.24□□□□□ -0.13
CLSTN3-202ENST00000331148 WFDC2Q14508 124 aa14.24□□□□□ -0.13
CLSTN3-202ENST00000331148 PSMG4Q5JS54 123 aa14.24□□□□□ -0.13
CLSTN3-202ENST00000331148 S100A7AQ86SG5 101 aa14.24□□□□□ -0.13
CLSTN3-202ENST00000331148 LINC00311Q8N616 119 aa14.24□□□□□ -0.13
CLSTN3-202ENST00000331148 SPATA25Q9BR10 227 aa14.24□□□□□ -0.13
CLSTN3-202ENST00000331148 IGHV3-72A0A0B4J1Y9 119 aa14.23□□□□□ -0.13
CLSTN3-202ENST00000331148 SHISA9B4DS77 424 aa14.23□□□□□ -0.13
CLSTN3-202ENST00000331148 ZNF207O43670 478 aaKnown RBP14.23□□□□□ -0.13
CLSTN3-202ENST00000331148 FCN3O75636 299 aa14.23□□□□□ -0.13
CLSTN3-202ENST00000331148 LY6DQ14210 128 aa14.23□□□□□ -0.13
CLSTN3-202ENST00000331148 ODF1Q14990 250 aa14.23□□□□□ -0.13
CLSTN3-202ENST00000331148 SHANK2-AS3Q9BTD1 123 aa14.23□□□□□ -0.13
CLSTN3-202ENST00000331148 ZMAT4Q9H898 229 aa14.23□□□□□ -0.13
CLSTN3-202ENST00000331148 HHLA3Q9XRX5 114 aa14.23□□□□□ -0.13
CLSTN3-202ENST00000331148 A0A1W2PRD5 423 aa14.22□□□□□ -0.13
CLSTN3-202ENST00000331148 A0A1W2PRF3 423 aa14.22□□□□□ -0.13
CLSTN3-202ENST00000331148 A0A1W2PRM7 423 aa14.22□□□□□ -0.13
CLSTN3-202ENST00000331148 E9PLD3 99 aa14.22□□□□□ -0.13
CLSTN3-202ENST00000331148 F8W1H4 67 aa14.22□□□□□ -0.13
CLSTN3-202ENST00000331148 J3QR89 54 aa14.22□□□□□ -0.13
CLSTN3-202ENST00000331148 MC5RP33032 325 aa14.22□□□□□ -0.13
CLSTN3-202ENST00000331148 CCDC144NLQ6NUI1 221 aa14.22□□□□□ -0.13
CLSTN3-202ENST00000331148 RASL11BQ9BPW5 248 aa14.22□□□□□ -0.13
CLSTN3-202ENST00000331148 PCNX1Q96RV3 2341 aa14.22□□□□□ -0.13
CLSTN3-202ENST00000331148 CCL21O00585 134 aa14.22□□□□□ -0.13
CLSTN3-202ENST00000331148 SH2D1AO60880 128 aa14.22□□□□□ -0.13
CLSTN3-202ENST00000331148 RBP4P02753 201 aa14.22□□□□□ -0.13
CLSTN3-202ENST00000331148 CEND1Q8N111 149 aa14.22□□□□□ -0.13
CLSTN3-202ENST00000331148 LYPD1Q8N2G4 141 aa14.22□□□□□ -0.13
CLSTN3-202ENST00000331148 TM2D2Q9BX73 214 aa14.22□□□□□ -0.13
CLSTN3-202ENST00000331148 CADP27708 2225 aa14.22□□□□□ -0.13
CLSTN3-202ENST00000331148 TRBV25-1A0A075B6N4 114 aa14.21□□□□□ -0.13
CLSTN3-202ENST00000331148 H3BRN7 92 aa14.21□□□□□ -0.13
CLSTN3-202ENST00000331148 M0R3E3 92 aa14.21□□□□□ -0.13
CLSTN3-202ENST00000331148 THBDP07204 575 aa14.21□□□□□ -0.13
CLSTN3-202ENST00000331148 ZNF562Q6V9R5 426 aa14.21□□□□□ -0.13
CLSTN3-202ENST00000331148 C8orf31Q8N9H6 132 aa14.21□□□□□ -0.13
CLSTN3-202ENST00000331148 SPTA1P02549 2419 aa14.21□□□□□ -0.14
CLSTN3-202ENST00000331148 IGLL5B9A064 214 aa14.2□□□□□ -0.14
CLSTN3-202ENST00000331148 CNTFRP26992 372 aa14.2□□□□□ -0.14
CLSTN3-202ENST00000331148 NUP37Q8NFH4 326 aa14.2□□□□□ -0.14
CLSTN3-202ENST00000331148 VSTM5A8MXK1 200 aa14.2□□□□□ -0.14
CLSTN3-202ENST00000331148 TEX22C9J3V5 150 aa14.2□□□□□ -0.14
CLSTN3-202ENST00000331148 IGKV1-17P01599 117 aa14.2□□□□□ -0.14
CLSTN3-202ENST00000331148 POLEQ07864 2286 aa14.19□□□□□ -0.14
CLSTN3-202ENST00000331148 PLXNB1O43157 2135 aa14.19□□□□□ -0.14
CLSTN3-202ENST00000331148 I3L2K1 104 aa14.19□□□□□ -0.14
CLSTN3-202ENST00000331148 K7EMI3 77 aa14.19□□□□□ -0.14
CLSTN3-202ENST00000331148 IGKCP01834 107 aa14.19□□□□□ -0.14
CLSTN3-202ENST00000331148 CRYGBP07316 175 aa14.19□□□□□ -0.14
CLSTN3-202ENST00000331148 ARPC1AQ92747 370 aa14.19□□□□□ -0.14
CLSTN3-202ENST00000331148 SPAG8Q99932 426 aaPredicted RBP14.19□□□□□ -0.14
CLSTN3-202ENST00000331148 EVI2AP22794 236 aa14.18□□□□□ -0.14
CLSTN3-202ENST00000331148 TWIST1Q15672 202 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms