RNA–Protein interactions for RNA: ENST00000330503.11

DDX41-201, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 2,137 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-201ENST00000330503 CDX1P47902 265 aaPredicted RBP12.99□□□□□ -0.33
DDX41-201ENST00000330503 C16orf54Q6UWD8 224 aa12.99□□□□□ -0.33
DDX41-201ENST00000330503 ZC2HC1AQ96GY0 325 aa12.99□□□□□ -0.33
DDX41-201ENST00000330503 IGKV2-40A0A087WW87 121 aaPredicted RBP12.98□□□□□ -0.33
DDX41-201ENST00000330503 IGKV2D-40P01614 121 aaPredicted RBP12.98□□□□□ -0.33
DDX41-201ENST00000330503 LINC00518Q8N0U6 118 aa12.98□□□□□ -0.33
DDX41-201ENST00000330503 SIGLECL1Q8N7X8 197 aa12.98□□□□□ -0.33
DDX41-201ENST00000330503 TSKUQ8WUA8 353 aa12.98□□□□□ -0.33
DDX41-201ENST00000330503 TMEM89A2RUT3 159 aa12.98□□□□□ -0.33
DDX41-201ENST00000330503 LCN12Q6JVE5 192 aa12.98□□□□□ -0.33
DDX41-201ENST00000330503 GLMPQ8WWB7 406 aa12.98□□□□□ -0.33
DDX41-201ENST00000330503 RPP21Q9H633 154 aaKnown RBP12.98□□□□□ -0.33
DDX41-201ENST00000330503 TRAV8-2A0A0B4J237 113 aa12.97□□□□□ -0.33
DDX41-201ENST00000330503 SERTM2A0A1B0GWG4 89 aa12.97□□□□□ -0.33
DDX41-201ENST00000330503 NPIPB6E9PJ23 425 aa12.97□□□□□ -0.33
DDX41-201ENST00000330503 CRIP1P50238 77 aa12.97□□□□□ -0.33
DDX41-201ENST00000330503 NUP35Q8NFH5 326 aa12.97□□□□□ -0.33
DDX41-201ENST00000330503 CCDC168Q8NDH2 2452 aa12.97□□□□□ -0.33
DDX41-201ENST00000330503 P01737 135 aa12.97□□□□□ -0.33
DDX41-201ENST00000330503 HIST3H2BBQ8N257 126 aa12.97□□□□□ -0.33
DDX41-201ENST00000330503 NEU1Q99519 415 aa12.97□□□□□ -0.33
DDX41-201ENST00000330503 FOXC2Q99958 501 aa12.97□□□□□ -0.33
DDX41-201ENST00000330503 VGLL1Q99990 258 aa12.97□□□□□ -0.33
DDX41-201ENST00000330503 GNB1LQ9BYB4 327 aa12.97□□□□□ -0.33
DDX41-201ENST00000330503 PEF1Q9UBV8 284 aaKnown RBP12.97□□□□□ -0.33
DDX41-201ENST00000330503 PRAC2D3DTV9 90 aa12.96□□□□□ -0.33
DDX41-201ENST00000330503 KRTAP1-1Q07627 177 aa12.96□□□□□ -0.33
DDX41-201ENST00000330503 FAM209BQ5JX69 171 aa12.96□□□□□ -0.33
DDX41-201ENST00000330503 MRPL54Q6P161 138 aaKnown RBP12.96□□□□□ -0.33
DDX41-201ENST00000330503 TMEM136Q6ZRR5 245 aa12.96□□□□□ -0.33
DDX41-201ENST00000330503 RNF182Q8N6D2 247 aa12.96□□□□□ -0.33
DDX41-201ENST00000330503 DAZAP1Q96EP5 407 aaKnown RBP12.96□□□□□ -0.33
DDX41-201ENST00000330503 C8orf49Q96NF6 230 aa12.96□□□□□ -0.33
DDX41-201ENST00000330503 DUX5Q96PT3 197 aa12.96□□□□□ -0.33
DDX41-201ENST00000330503 NPFFR1Q9GZQ6 430 aa12.96□□□□□ -0.33
DDX41-201ENST00000330503 MRPL18Q9H0U6 180 aaKnown RBP12.96□□□□□ -0.33
DDX41-201ENST00000330503 ITPR2Q14571 2701 aa12.96□□□□□ -0.34
DDX41-201ENST00000330503 XKRY2A2RUG3 117 aa12.95□□□□□ -0.34
DDX41-201ENST00000330503 CT83Q5H943 113 aa12.95□□□□□ -0.34
DDX41-201ENST00000330503 COA6Q5JTJ3 125 aaKnown RBP12.95□□□□□ -0.34
DDX41-201ENST00000330503 GBGT1Q8N5D6 347 aa12.95□□□□□ -0.34
DDX41-201ENST00000330503 NAT8BQ9UHF3 227 aa12.95□□□□□ -0.34
DDX41-201ENST00000330503 RPLP1P05386 114 aaKnown RBP12.95□□□□□ -0.34
DDX41-201ENST00000330503 TCF24Q7RTU0 167 aa12.95□□□□□ -0.34
DDX41-201ENST00000330503 GTSF1Q8WW33 167 aa12.95□□□□□ -0.34
DDX41-201ENST00000330503 SLC50A1Q9BRV3 221 aa12.95□□□□□ -0.34
DDX41-201ENST00000330503 GPR61Q9BZJ8 451 aa12.95□□□□□ -0.34
DDX41-201ENST00000330503 HIGD1CA8MV81 97 aa12.94□□□□□ -0.34
DDX41-201ENST00000330503 SNURFLB1AK76 121 aa12.94□□□□□ -0.34
DDX41-201ENST00000330503 C8orf86Q6ZUL3 223 aa12.94□□□□□ -0.34
DDX41-201ENST00000330503 A8MWL6 223 aa12.94□□□□□ -0.34
DDX41-201ENST00000330503 TM4SF20Q53R12 229 aa12.94□□□□□ -0.34
DDX41-201ENST00000330503 PDZD11Q5EBL8 140 aa12.94□□□□□ -0.34
DDX41-201ENST00000330503 COX8CQ7Z4L0 72 aa12.94□□□□□ -0.34
DDX41-201ENST00000330503 Q8N2B8 174 aa12.94□□□□□ -0.34
DDX41-201ENST00000330503 PRR25Q96S07 402 aa12.94□□□□□ -0.34
DDX41-201ENST00000330503 UNC79Q9P2D8 2635 aa12.93□□□□□ -0.34
DDX41-201ENST00000330503 FLNAP21333 2647 aaKnown RBP12.93□□□□□ -0.34
DDX41-201ENST00000330503 MEOX2P50222 304 aa12.93□□□□□ -0.34
DDX41-201ENST00000330503 RPL19P84098 196 aaKnown RBP12.93□□□□□ -0.34
DDX41-201ENST00000330503 FOXE3Q13461 319 aa12.93□□□□□ -0.34
DDX41-201ENST00000330503 GDF5OSQ5U4N7 250 aa12.93□□□□□ -0.34
DDX41-201ENST00000330503 WDR73Q6P4I2 378 aa12.93□□□□□ -0.34
DDX41-201ENST00000330503 OR4B1Q8NGF8 309 aa12.93□□□□□ -0.34
DDX41-201ENST00000330503 MYOZ3Q8TDC0 251 aa12.93□□□□□ -0.34
DDX41-201ENST00000330503 GCN1Q92616 2671 aaKnown RBP12.93□□□□□ -0.34
DDX41-201ENST00000330503 TLN2Q9Y4G6 2542 aa12.93□□□□□ -0.34
DDX41-201ENST00000330503 AKAP9Q99996 3911 aa12.92□□□□□ -0.34
DDX41-201ENST00000330503 ERCC8Q13216 396 aa12.92□□□□□ -0.34
DDX41-201ENST00000330503 GPHB5Q86YW7 130 aa12.92□□□□□ -0.34
DDX41-201ENST00000330503 WIPF2Q8TF74 440 aaPredicted RBP12.92□□□□□ -0.34
DDX41-201ENST00000330503 FBLL1A6NHQ2 334 aaKnown RBP12.92□□□□□ -0.34
DDX41-201ENST00000330503 S100A8P05109 93 aa12.92□□□□□ -0.34
DDX41-201ENST00000330503 GZMBP10144 247 aa12.92□□□□□ -0.34
DDX41-201ENST00000330503 COX19Q49B96 90 aa12.92□□□□□ -0.34
DDX41-201ENST00000330503 OR2D3Q8NGH3 330 aa12.92□□□□□ -0.34
DDX41-201ENST00000330503 Q8TAT8 98 aa12.92□□□□□ -0.34
DDX41-201ENST00000330503 IGHV7-4-1A0A0J9YVY3 117 aa12.91□□□□□ -0.34
DDX41-201ENST00000330503 ELANEP08246 267 aa12.91□□□□□ -0.34
DDX41-201ENST00000330503 SAPCD1Q5SSQ6 148 aa12.91□□□□□ -0.34
DDX41-201ENST00000330503 TEX29Q8N6K0 151 aa12.91□□□□□ -0.34
DDX41-201ENST00000330503 GFRA4Q9GZZ7 299 aa12.91□□□□□ -0.34
DDX41-201ENST00000330503 EDN2P20800 178 aa12.91□□□□□ -0.34
DDX41-201ENST00000330503 RNF152Q8N8N0 203 aa12.91□□□□□ -0.34
DDX41-201ENST00000330503 A0A1B0GXF2 115 aa12.9□□□□□ -0.34
DDX41-201ENST00000330503 RBAKDNA6NC62 111 aa12.9□□□□□ -0.34
DDX41-201ENST00000330503 FAM231BA6NCW3 169 aa12.9□□□□□ -0.34
DDX41-201ENST00000330503 K7EMT4 169 aa12.9□□□□□ -0.34
DDX41-201ENST00000330503 CD5LO43866 347 aa12.9□□□□□ -0.34
DDX41-201ENST00000330503 MT-ND6P03923 174 aa12.9□□□□□ -0.34
DDX41-201ENST00000330503 RAB4BP61018 213 aa12.9□□□□□ -0.34
DDX41-201ENST00000330503 FAM106AQ4KMX7 169 aa12.9□□□□□ -0.34
DDX41-201ENST00000330503 RASL11AQ6T310 242 aa12.9□□□□□ -0.34
DDX41-201ENST00000330503 TMEM86BQ8N661 226 aa12.9□□□□□ -0.34
DDX41-201ENST00000330503 MRPL53Q96EL3 112 aaKnown RBP12.9□□□□□ -0.34
DDX41-201ENST00000330503 PGLYRP4Q96LB8 373 aa12.9□□□□□ -0.34
DDX41-201ENST00000330503 C20orf173Q96LM9 149 aa12.9□□□□□ -0.34
DDX41-201ENST00000330503 RHPN1-AS1Q9BWJ2 59 aa12.9□□□□□ -0.34
DDX41-201ENST00000330503 SMPXQ9UHP9 88 aa12.9□□□□□ -0.34
DDX41-201ENST00000330503 A0A1B0GUS0 222 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms