RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 SIVA1O15304 175 aa11.29□□□□□ -0.6
CSPG4-201ENST00000308508 C1orf43Q9BWL3 253 aa11.29□□□□□ -0.6
CSPG4-201ENST00000308508 CRLF1O75462 422 aa11.29□□□□□ -0.6
CSPG4-201ENST00000308508 EGR2P11161 476 aaPredicted RBP11.29□□□□□ -0.6
CSPG4-201ENST00000308508 MST1P26927 711 aa11.29□□□□□ -0.6
CSPG4-201ENST00000308508 GAS1P54826 345 aa11.29□□□□□ -0.6
CSPG4-201ENST00000308508 C2orf66Q6UXQ4 117 aa11.29□□□□□ -0.6
CSPG4-201ENST00000308508 METRNQ9UJH8 293 aa11.29□□□□□ -0.6
CSPG4-201ENST00000308508 BVES-AS1Q5T3Y7 98 aa11.28□□□□□ -0.6
CSPG4-201ENST00000308508 IGKV1-27A0A075B6S5 117 aa11.28□□□□□ -0.6
CSPG4-201ENST00000308508 PRSS57Q6UWY2 283 aa11.28□□□□□ -0.6
CSPG4-201ENST00000308508 Q6ZS49 121 aa11.28□□□□□ -0.6
CSPG4-201ENST00000308508 IGLV3-12A0A075B6K2 115 aa11.28□□□□□ -0.6
CSPG4-201ENST00000308508 TRAV25A0A0B4J276 109 aa11.28□□□□□ -0.6
CSPG4-201ENST00000308508 HELZP42694 1942 aaKnown RBP11.28□□□□□ -0.6
CSPG4-201ENST00000308508 SHANK2-AS3Q9BTD1 123 aa11.28□□□□□ -0.6
CSPG4-201ENST00000308508 TRBV25-1A0A075B6N4 114 aa11.28□□□□□ -0.6
CSPG4-201ENST00000308508 H3BMG7 143 aa11.28□□□□□ -0.6
CSPG4-201ENST00000308508 SIGLEC9Q9Y336 463 aa11.28□□□□□ -0.6
CSPG4-201ENST00000308508 hADV29S1A0JD25 119 aa11.27□□□□□ -0.6
CSPG4-201ENST00000308508 TRAV12-1A0A0B4J245 112 aa11.27□□□□□ -0.61
CSPG4-201ENST00000308508 M0R1W7 72 aa11.27□□□□□ -0.61
CSPG4-201ENST00000308508 RPL35AP18077 110 aaKnown RBP11.27□□□□□ -0.61
CSPG4-201ENST00000308508 DSCR9P59020 149 aa11.27□□□□□ -0.61
CSPG4-201ENST00000308508 POU2AF1Q16633 256 aa11.27□□□□□ -0.61
CSPG4-201ENST00000308508 BUB1B-PAK6H3BSN5 160 aa11.27□□□□□ -0.61
CSPG4-201ENST00000308508 PFN1P07737 140 aaKnown RBP11.27□□□□□ -0.61
CSPG4-201ENST00000308508 Q6ZWC4 215 aa11.27□□□□□ -0.61
CSPG4-201ENST00000308508 DYSFO75923 2080 aa11.27□□□□□ -0.61
CSPG4-201ENST00000308508 TMEM219Q86XT9 240 aa11.26□□□□□ -0.61
CSPG4-201ENST00000308508 CDKN1BP46527 198 aa11.26□□□□□ -0.61
CSPG4-201ENST00000308508 DAZ1Q9NQZ3 744 aaKnown RBP11.26□□□□□ -0.61
CSPG4-201ENST00000308508 LINC00527Q9UJ94 153 aa11.26□□□□□ -0.61
CSPG4-201ENST00000308508 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.26□□□□□ -0.61
CSPG4-201ENST00000308508 LINC00473A8K010 186 aa11.26□□□□□ -0.61
CSPG4-201ENST00000308508 ABCA4P78363 2273 aa11.26□□□□□ -0.61
CSPG4-201ENST00000308508 HLA-DRB4P13762 266 aa11.26□□□□□ -0.61
CSPG4-201ENST00000308508 CRYBA4P53673 196 aa11.26□□□□□ -0.61
CSPG4-201ENST00000308508 HLA-DRB4X5D2U9 266 aa11.26□□□□□ -0.61
CSPG4-201ENST00000308508 PSPNO60542 156 aa11.26□□□□□ -0.61
CSPG4-201ENST00000308508 FGFBP3Q8TAT2 258 aa11.26□□□□□ -0.61
CSPG4-201ENST00000308508 SMIM27A0A1W2PRY6 76 aa11.26□□□□□ -0.61
CSPG4-201ENST00000308508 ACYP1P07311 99 aa11.26□□□□□ -0.61
CSPG4-201ENST00000308508 RNASE2P10153 161 aaKnown RBP11.26□□□□□ -0.61
CSPG4-201ENST00000308508 PFN2P35080 140 aa11.26□□□□□ -0.61
CSPG4-201ENST00000308508 SCRT2Q9NQ03 307 aa11.26□□□□□ -0.61
CSPG4-201ENST00000308508 TMEM178BH3BS89 294 aa11.25□□□□□ -0.61
CSPG4-201ENST00000308508 SBF1O95248 1867 aa11.25□□□□□ -0.61
CSPG4-201ENST00000308508 ZCCHC24Q8N2G6 241 aaKnown RBP11.25□□□□□ -0.61
CSPG4-201ENST00000308508 TSC2P49815 1807 aa11.25□□□□□ -0.61
CSPG4-201ENST00000308508 ROS1P08922 2347 aa11.25□□□□□ -0.61
CSPG4-201ENST00000308508 LINC00479Q96M42 142 aa11.25□□□□□ -0.61
CSPG4-201ENST00000308508 C15orf53Q8NAA6 179 aa11.25□□□□□ -0.61
CSPG4-201ENST00000308508 NDUFB8O95169 186 aa11.25□□□□□ -0.61
CSPG4-201ENST00000308508 THAP8Q8NA92 274 aa11.25□□□□□ -0.61
CSPG4-201ENST00000308508 CACNA1BQ00975 2339 aa11.25□□□□□ -0.61
CSPG4-201ENST00000308508 A0A1B0GUS0 222 aa11.24□□□□□ -0.61
CSPG4-201ENST00000308508 SHISA9B4DS77 424 aa11.24□□□□□ -0.61
CSPG4-201ENST00000308508 CD177Q8N6Q3 437 aa11.24□□□□□ -0.61
CSPG4-201ENST00000308508 TMEM213A2RRL7 107 aa11.24□□□□□ -0.61
CSPG4-201ENST00000308508 F8VRH5 84 aa11.24□□□□□ -0.61
CSPG4-201ENST00000308508 IGLL1P15814 213 aa11.24□□□□□ -0.61
CSPG4-201ENST00000308508 SYNJ2BPP57105 145 aa11.24□□□□□ -0.61
CSPG4-201ENST00000308508 SPRR3Q9UBC9 169 aa11.24□□□□□ -0.61
CSPG4-201ENST00000308508 NDUFA12Q9UI09 145 aa11.24□□□□□ -0.61
CSPG4-201ENST00000308508 B5MCH6 92 aa11.24□□□□□ -0.61
CSPG4-201ENST00000308508 LYNX1G3V0Z9 82 aa11.24□□□□□ -0.61
CSPG4-201ENST00000308508 LYNX1P0DP58 116 aa11.24□□□□□ -0.61
CSPG4-201ENST00000308508 SS18L2Q9UHA2 77 aa11.24□□□□□ -0.61
CSPG4-201ENST00000308508 NRXN2Q9P2S2 1712 aa11.24□□□□□ -0.61
CSPG4-201ENST00000308508 ADAMTS7Q9UKP4 1686 aa11.24□□□□□ -0.61
CSPG4-201ENST00000308508 NBL1P41271 181 aa11.24□□□□□ -0.61
CSPG4-201ENST00000308508 MRPL51Q4U2R6 128 aaKnown RBP11.24□□□□□ -0.61
CSPG4-201ENST00000308508 C5orf47Q569G3 176 aa11.24□□□□□ -0.61
CSPG4-201ENST00000308508 PIP4P2Q8N4L2 257 aa11.24□□□□□ -0.61
CSPG4-201ENST00000308508 RHPN1-AS1Q9BWJ2 59 aa11.24□□□□□ -0.61
CSPG4-201ENST00000308508 FOXG1P55316 489 aaPredicted RBP11.23□□□□□ -0.61
CSPG4-201ENST00000308508 CNOT1A5YKK6 2376 aaKnown RBP11.23□□□□□ -0.61
CSPG4-201ENST00000308508 SRSF2Q01130 221 aaKnown RBP11.23□□□□□ -0.61
CSPG4-201ENST00000308508 QRFPP83859 136 aa11.23□□□□□ -0.61
CSPG4-201ENST00000308508 ZNF672Q499Z4 452 aaPredicted RBP11.23□□□□□ -0.61
CSPG4-201ENST00000308508 C11orf44Q8N8P7 122 aa11.23□□□□□ -0.61
CSPG4-201ENST00000308508 C8orf49Q96NF6 230 aa11.23□□□□□ -0.61
CSPG4-201ENST00000308508 UBE2E2Q96LR5 201 aa11.22□□□□□ -0.61
CSPG4-201ENST00000308508 Q6P435 159 aa11.22□□□□□ -0.61
CSPG4-201ENST00000308508 CFPP27918 469 aa11.22□□□□□ -0.61
CSPG4-201ENST00000308508 KLRD1Q13241 179 aa11.22□□□□□ -0.61
CSPG4-201ENST00000308508 RNF166Q96A37 237 aaPredicted RBP11.22□□□□□ -0.61
CSPG4-201ENST00000308508 K7ERJ3 54 aa11.22□□□□□ -0.61
CSPG4-201ENST00000308508 IGHV2-5P01817 119 aa11.22□□□□□ -0.61
CSPG4-201ENST00000308508 IGFL4Q6B9Z1 124 aa11.22□□□□□ -0.61
CSPG4-201ENST00000308508 GVINP1Q7Z2Y8 2422 aa11.22□□□□□ -0.61
CSPG4-201ENST00000308508 DKK1O94907 266 aa11.22□□□□□ -0.61
CSPG4-201ENST00000308508 MSRB2Q9Y3D2 182 aa11.22□□□□□ -0.61
CSPG4-201ENST00000308508 PLXND1Q9Y4D7 1925 aa11.22□□□□□ -0.61
CSPG4-201ENST00000308508 MST1LQ2TV78 715 aa11.22□□□□□ -0.61
CSPG4-201ENST00000308508 FAM231DQ6ZW35 169 aa11.22□□□□□ -0.61
CSPG4-201ENST00000308508 HS3ST6Q96QI5 342 aa11.22□□□□□ -0.61
CSPG4-201ENST00000308508 E9PLN8 166 aa11.21□□□□□ -0.61
CSPG4-201ENST00000308508 IGLV3-19P01714 112 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms