RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.21□□□□□ -1.41
SCN9A-201ENST00000303354 IGKV2-29A2NJV5 120 aaPredicted RBP6.21□□□□□ -1.41
SCN9A-201ENST00000303354 SMDT1Q9H4I9 107 aa6.21□□□□□ -1.41
SCN9A-201ENST00000303354 U3KQE9 123 aa6.21□□□□□ -1.41
SCN9A-201ENST00000303354 J3QRE1 110 aa6.21□□□□□ -1.41
SCN9A-201ENST00000303354 TRGV9Q99603 122 aa6.21□□□□□ -1.41
SCN9A-201ENST00000303354 ERG28Q9UKR5 140 aa6.21□□□□□ -1.41
SCN9A-201ENST00000303354 C15orf62A8K5M9 175 aa6.21□□□□□ -1.42
SCN9A-201ENST00000303354 CXCL1P09341 107 aa6.21□□□□□ -1.42
SCN9A-201ENST00000303354 ID3Q02535 119 aa6.21□□□□□ -1.42
SCN9A-201ENST00000303354 TSKUQ8WUA8 353 aa6.21□□□□□ -1.42
SCN9A-201ENST00000303354 SPTBP11277 2137 aa6.21□□□□□ -1.42
SCN9A-201ENST00000303354 LCTP09848 1927 aa6.21□□□□□ -1.42
SCN9A-201ENST00000303354 FAM90A9PA6NNJ1 464 aa6.21□□□□□ -1.42
SCN9A-201ENST00000303354 SPINK8P0C7L1 97 aa6.21□□□□□ -1.42
SCN9A-201ENST00000303354 CTSZQ9UBR2 303 aa6.21□□□□□ -1.42
SCN9A-201ENST00000303354 VCYO14598 125 aa6.21□□□□□ -1.42
SCN9A-201ENST00000303354 TP53TG1Q9Y2A0 90 aa6.21□□□□□ -1.42
SCN9A-201ENST00000303354 ESDP10768 282 aa6.21□□□□□ -1.42
SCN9A-201ENST00000303354 ZNF134P52741 427 aa6.21□□□□□ -1.42
SCN9A-201ENST00000303354 ZNF562Q6V9R5 426 aa6.21□□□□□ -1.42
SCN9A-201ENST00000303354 MTURNQ8N3F0 131 aa6.21□□□□□ -1.42
SCN9A-201ENST00000303354 TRAV12-1A0A0B4J245 112 aa6.2□□□□□ -1.42
SCN9A-201ENST00000303354 A0A1W2PRE2 83 aa6.2□□□□□ -1.42
SCN9A-201ENST00000303354 GATA3P23771 443 aa6.2□□□□□ -1.42
SCN9A-201ENST00000303354 A0A087X0K7 114 aa6.2□□□□□ -1.42
SCN9A-201ENST00000303354 IGHV4-28A0A0C4DH34 117 aa6.2□□□□□ -1.42
SCN9A-201ENST00000303354 DDTP30046 118 aa6.2□□□□□ -1.42
SCN9A-201ENST00000303354 HEATR5BQ9P2D3 2071 aa6.2□□□□□ -1.42
SCN9A-201ENST00000303354 M0R2N4 97 aa6.2□□□□□ -1.42
SCN9A-201ENST00000303354 RS1O15537 224 aa6.2□□□□□ -1.42
SCN9A-201ENST00000303354 IGHV2-5P01817 119 aa6.2□□□□□ -1.42
SCN9A-201ENST00000303354 MORN3Q6PF18 240 aaPredicted RBP6.2□□□□□ -1.42
SCN9A-201ENST00000303354 PRR25Q96S07 402 aa6.2□□□□□ -1.42
SCN9A-201ENST00000303354 NPBQ8NG41 125 aa6.2□□□□□ -1.42
SCN9A-201ENST00000303354 WIPF2Q8TF74 440 aaPredicted RBP6.2□□□□□ -1.42
SCN9A-201ENST00000303354 SNHG12Q9BXW3 62 aa6.2□□□□□ -1.42
SCN9A-201ENST00000303354 SMIM6P0DI80 62 aa6.2□□□□□ -1.42
SCN9A-201ENST00000303354 KLF5Q13887 457 aaPredicted RBP6.2□□□□□ -1.42
SCN9A-201ENST00000303354 ASXL3Q9C0F0 2248 aa6.2□□□□□ -1.42
SCN9A-201ENST00000303354 PLNP26678 52 aa6.2□□□□□ -1.42
SCN9A-201ENST00000303354 HLA-DRB4P13762 266 aa6.2□□□□□ -1.42
SCN9A-201ENST00000303354 DEFB135Q30KP9 77 aa6.2□□□□□ -1.42
SCN9A-201ENST00000303354 HLA-DRB4X5D2U9 266 aa6.2□□□□□ -1.42
SCN9A-201ENST00000303354 IGHV1OR15-1A0A075B7D0 117 aa6.19□□□□□ -1.42
SCN9A-201ENST00000303354 PRSS57Q6UWY2 283 aa6.19□□□□□ -1.42
SCN9A-201ENST00000303354 KIAA1671Q9BY89 1806 aa6.19□□□□□ -1.42
SCN9A-201ENST00000303354 WIPF3A6NGB9 483 aa6.19□□□□□ -1.42
SCN9A-201ENST00000303354 Q6AWC8 147 aa6.19□□□□□ -1.42
SCN9A-201ENST00000303354 STPG4Q8N801 248 aa6.19□□□□□ -1.42
SCN9A-201ENST00000303354 ARHGEF17Q96PE2 2063 aaPredicted RBP6.19□□□□□ -1.42
SCN9A-201ENST00000303354 IGHV4OR15-8A0A075B7B6 117 aa6.19□□□□□ -1.42
SCN9A-201ENST00000303354 A0A087WW49 117 aa6.19□□□□□ -1.42
SCN9A-201ENST00000303354 IGKV1-6A0A0C4DH72 117 aa6.19□□□□□ -1.42
SCN9A-201ENST00000303354 OOSP1A8MZH6 123 aa6.19□□□□□ -1.42
SCN9A-201ENST00000303354 LBHQ53QV2 105 aaPredicted RBP6.19□□□□□ -1.42
SCN9A-201ENST00000303354 C9orf66Q5T8R8 295 aa6.19□□□□□ -1.42
SCN9A-201ENST00000303354 C5orf38Q86SI9 138 aa6.19□□□□□ -1.42
SCN9A-201ENST00000303354 SPOCK3Q9BQ16 436 aa6.19□□□□□ -1.42
SCN9A-201ENST00000303354 TIMM21Q9BVV7 248 aa6.19□□□□□ -1.42
SCN9A-201ENST00000303354 CENPVL3A0A0U1RRI6 287 aa6.19□□□□□ -1.42
SCN9A-201ENST00000303354 VPREB3Q9UKI3 123 aa6.19□□□□□ -1.42
SCN9A-201ENST00000303354 STAG3L3P0CL85 134 aa6.18□□□□□ -1.42
SCN9A-201ENST00000303354 FOXE3Q13461 319 aa6.18□□□□□ -1.42
SCN9A-201ENST00000303354 SCRT2Q9NQ03 307 aa6.18□□□□□ -1.42
SCN9A-201ENST00000303354 CYYR1Q96J86 154 aa6.18□□□□□ -1.42
SCN9A-201ENST00000303354 LEPROTO15243 131 aa6.18□□□□□ -1.42
SCN9A-201ENST00000303354 CRLF1O75462 422 aa6.18□□□□□ -1.42
SCN9A-201ENST00000303354 GAGE2BQ13066 116 aa6.18□□□□□ -1.42
SCN9A-201ENST00000303354 OSTCQ9NRP0 149 aa6.18□□□□□ -1.42
SCN9A-201ENST00000303354 IGFL3Q6UXB1 125 aa6.18□□□□□ -1.42
SCN9A-201ENST00000303354 GAGE2AQ6NT46 116 aa6.18□□□□□ -1.42
SCN9A-201ENST00000303354 WDR81Q562E7 1941 aa6.18□□□□□ -1.42
SCN9A-201ENST00000303354 GUSBP1Q15486 140 aa6.18□□□□□ -1.42
SCN9A-201ENST00000303354 OCIAD2Q56VL3 154 aa6.18□□□□□ -1.42
SCN9A-201ENST00000303354 TMEM243Q9BU79 118 aa6.17□□□□□ -1.42
SCN9A-201ENST00000303354 BUB3O43684 328 aa6.17□□□□□ -1.42
SCN9A-201ENST00000303354 A0A1W2PNU3 283 aaPredicted RBP6.17□□□□□ -1.42
SCN9A-201ENST00000303354 J3QLI3 93 aa6.17□□□□□ -1.42
SCN9A-201ENST00000303354 K7EMI3 77 aa6.17□□□□□ -1.42
SCN9A-201ENST00000303354 CDKN1BP46527 198 aa6.17□□□□□ -1.42
SCN9A-201ENST00000303354 TRPT1Q86TN4 253 aaKnown RBP6.17□□□□□ -1.42
SCN9A-201ENST00000303354 TNFRSF6BO95407 300 aa6.17□□□□□ -1.42
SCN9A-201ENST00000303354 SHANK2-AS3Q9BTD1 123 aa6.17□□□□□ -1.42
SCN9A-201ENST00000303354 DEFB125Q8N687 156 aa6.17□□□□□ -1.42
SCN9A-201ENST00000303354 SMR3AQ99954 134 aa6.17□□□□□ -1.42
SCN9A-201ENST00000303354 PLA2G5P39877 138 aa6.17□□□□□ -1.42
SCN9A-201ENST00000303354 ZNF833PQ6ZTB9 187 aa6.17□□□□□ -1.42
SCN9A-201ENST00000303354 LINC00518Q8N0U6 118 aa6.17□□□□□ -1.42
SCN9A-201ENST00000303354 CLDN16Q9Y5I7 305 aa6.17□□□□□ -1.42
SCN9A-201ENST00000303354 IGLV2-18A0A075B6J9 118 aa6.16□□□□□ -1.42
SCN9A-201ENST00000303354 ZFAND6Q6FIF0 208 aa6.16□□□□□ -1.42
SCN9A-201ENST00000303354 RNF5Q99942 180 aa6.16□□□□□ -1.42
SCN9A-201ENST00000303354 FER1L5A0AVI2 2057 aa6.16□□□□□ -1.42
SCN9A-201ENST00000303354 IGHV7-4-1A0A0J9YVY3 117 aa6.16□□□□□ -1.42
SCN9A-201ENST00000303354 TINCRA0A1B0GVN0 87 aa6.16□□□□□ -1.42
SCN9A-201ENST00000303354 PET117Q6UWS5 81 aa6.16□□□□□ -1.42
SCN9A-201ENST00000303354 SBF1O95248 1867 aa6.16□□□□□ -1.42
SCN9A-201ENST00000303354 A0A1B0GW15 77 aa6.16□□□□□ -1.42
SCN9A-201ENST00000303354 Q86TA4 180 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms