RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 TMPRSS5Q9H3S3 457 aa10.16□□□□□ -0.78
CCDC88B-201ENST00000301897 A0A096LPF7 62 aa10.15□□□□□ -0.78
CCDC88B-201ENST00000301897 SSSCA1O60232 199 aa10.15□□□□□ -0.78
CCDC88B-201ENST00000301897 COX7A2P2O60397 106 aa10.15□□□□□ -0.78
CCDC88B-201ENST00000301897 KIR3DS1Q14943 382 aa10.15□□□□□ -0.78
CCDC88B-201ENST00000301897 GUK1Q16774 197 aa10.15□□□□□ -0.78
CCDC88B-201ENST00000301897 TMEM14EPQ6UXP3 125 aa10.15□□□□□ -0.78
CCDC88B-201ENST00000301897 Q6ZTI0 123 aa10.15□□□□□ -0.78
CCDC88B-201ENST00000301897 LYPD1Q8N2G4 141 aa10.15□□□□□ -0.78
CCDC88B-201ENST00000301897 FRZBQ92765 325 aa10.15□□□□□ -0.78
CCDC88B-201ENST00000301897 GGACTQ9BVM4 153 aa10.15□□□□□ -0.78
CCDC88B-201ENST00000301897 V9GYH0 126 aa10.15□□□□□ -0.78
CCDC88B-201ENST00000301897 SRRM2Q9UQ35 2752 aaKnown RBP10.15□□□□□ -0.78
CCDC88B-201ENST00000301897 TRAV12-3A0A0B4J271 114 aa10.14□□□□□ -0.79
CCDC88B-201ENST00000301897 C9orf170A2RU37 121 aa10.14□□□□□ -0.79
CCDC88B-201ENST00000301897 METTL15P1P0C7V9 234 aa10.14□□□□□ -0.79
CCDC88B-201ENST00000301897 TAS2R30P59541 319 aa10.14□□□□□ -0.79
CCDC88B-201ENST00000301897 SLC38A11Q08AI6 406 aa10.14□□□□□ -0.79
CCDC88B-201ENST00000301897 VSIG2Q96IQ7 327 aa10.14□□□□□ -0.79
CCDC88B-201ENST00000301897 CCDC160A6NGH7 325 aa10.13□□□□□ -0.79
CCDC88B-201ENST00000301897 PRAC2D3DTV9 90 aa10.13□□□□□ -0.79
CCDC88B-201ENST00000301897 NPIPB6E9PJ23 425 aa10.13□□□□□ -0.79
CCDC88B-201ENST00000301897 AGPAT2O15120 278 aa10.13□□□□□ -0.79
CCDC88B-201ENST00000301897 TSC22D2O75157 780 aa10.13□□□□□ -0.79
CCDC88B-201ENST00000301897 CCNKO75909 580 aa10.13□□□□□ -0.79
CCDC88B-201ENST00000301897 IFNA5P01569 189 aa10.13□□□□□ -0.79
CCDC88B-201ENST00000301897 SLC25A5P05141 298 aaKnown RBP10.13□□□□□ -0.79
CCDC88B-201ENST00000301897 PRB4P10163 310 aaPredicted RBP10.13□□□□□ -0.79
CCDC88B-201ENST00000301897 SLAQ13239 276 aa10.13□□□□□ -0.79
CCDC88B-201ENST00000301897 C10orf113Q5VZT2 155 aa10.13□□□□□ -0.79
CCDC88B-201ENST00000301897 PARD6GQ9BYG4 376 aaPredicted RBP10.13□□□□□ -0.79
CCDC88B-201ENST00000301897 ICOSQ9Y6W8 199 aa10.13□□□□□ -0.79
CCDC88B-201ENST00000301897 TRAV9-2A0A087WT02 112 aa10.12□□□□□ -0.79
CCDC88B-201ENST00000301897 K7EP13 123 aa10.12□□□□□ -0.79
CCDC88B-201ENST00000301897 SLC17A3O00476 420 aa10.12□□□□□ -0.79
CCDC88B-201ENST00000301897 NXPH4O95158 308 aa10.12□□□□□ -0.79
CCDC88B-201ENST00000301897 CT45A10P0DMU9 189 aa10.12□□□□□ -0.79
CCDC88B-201ENST00000301897 IGLC2P0DOY2 106 aa10.12□□□□□ -0.79
CCDC88B-201ENST00000301897 RAB31Q13636 194 aa10.12□□□□□ -0.79
CCDC88B-201ENST00000301897 ZBTB8BQ8NAP8 495 aaPredicted RBP10.12□□□□□ -0.79
CCDC88B-201ENST00000301897 ZNF431Q8TF32 576 aaPredicted RBP10.12□□□□□ -0.79
CCDC88B-201ENST00000301897 SAT2Q96F10 170 aaPredicted RBP10.12□□□□□ -0.79
CCDC88B-201ENST00000301897 LINC00467Q9BRT7 94 aa10.12□□□□□ -0.79
CCDC88B-201ENST00000301897 FUT9Q9Y231 359 aa10.12□□□□□ -0.79
CCDC88B-201ENST00000301897 FLG2Q5D862 2391 aaPredicted RBP10.12□□□□□ -0.79
CCDC88B-201ENST00000301897 TRGV1A0A0A0MS02 117 aa10.11□□□□□ -0.79
CCDC88B-201ENST00000301897 C7orf71A4D174 169 aa10.11□□□□□ -0.79
CCDC88B-201ENST00000301897 J3KRW8 73 aa10.11□□□□□ -0.79
CCDC88B-201ENST00000301897 PAX4O43316 350 aa10.11□□□□□ -0.79
CCDC88B-201ENST00000301897 ZNF253O75346 499 aa10.11□□□□□ -0.79
CCDC88B-201ENST00000301897 SNRPCP09234 159 aaKnown RBP10.11□□□□□ -0.79
CCDC88B-201ENST00000301897 XGP55808 180 aa10.11□□□□□ -0.79
CCDC88B-201ENST00000301897 OPCMLQ14982 345 aa10.11□□□□□ -0.79
CCDC88B-201ENST00000301897 ANXA2RQ3ZCQ2 193 aa10.11□□□□□ -0.79
CCDC88B-201ENST00000301897 Q5VSD8 79 aa10.11□□□□□ -0.79
CCDC88B-201ENST00000301897 MRPL53Q96EL3 112 aaKnown RBP10.11□□□□□ -0.79
CCDC88B-201ENST00000301897 DNAJC4Q9NNZ3 241 aa10.11□□□□□ -0.79
CCDC88B-201ENST00000301897 GSN-AS1Q9NRJ2 163 aa10.11□□□□□ -0.79
CCDC88B-201ENST00000301897 VPS13BQ7Z7G8 4022 aa10.1□□□□□ -0.79
CCDC88B-201ENST00000301897 ZNF324O75467 553 aaPredicted RBP10.1□□□□□ -0.79
CCDC88B-201ENST00000301897 S100A5P33763 92 aa10.1□□□□□ -0.79
CCDC88B-201ENST00000301897 Q6ZRG5 221 aa10.1□□□□□ -0.79
CCDC88B-201ENST00000301897 EIF4E3Q8N5X7 224 aaKnown RBP10.1□□□□□ -0.79
CCDC88B-201ENST00000301897 C11orf72Q8NBR9 251 aa10.1□□□□□ -0.79
CCDC88B-201ENST00000301897 OR1L4Q8NGR5 311 aa10.1□□□□□ -0.79
CCDC88B-201ENST00000301897 TMEM37Q8WXS4 190 aa10.1□□□□□ -0.79
CCDC88B-201ENST00000301897 LINC00854A0A1B0GVQ3 168 aa10.09□□□□□ -0.79
CCDC88B-201ENST00000301897 H3BQ15 152 aa10.09□□□□□ -0.79
CCDC88B-201ENST00000301897 H3BTX0 84 aa10.09□□□□□ -0.79
CCDC88B-201ENST00000301897 NDUFB6O95139 128 aa10.09□□□□□ -0.79
CCDC88B-201ENST00000301897 SCGB1D2O95969 90 aa10.09□□□□□ -0.79
CCDC88B-201ENST00000301897 TCL1AP56279 114 aa10.09□□□□□ -0.79
CCDC88B-201ENST00000301897 IAH1Q2TAA2 248 aaPredicted RBP10.09□□□□□ -0.79
CCDC88B-201ENST00000301897 C12orf45Q8N5I9 185 aaPredicted RBP10.09□□□□□ -0.79
CCDC88B-201ENST00000301897 ST6GAL2Q96JF0 529 aa10.09□□□□□ -0.79
CCDC88B-201ENST00000301897 LINC00477Q96M19 166 aa10.09□□□□□ -0.79
CCDC88B-201ENST00000301897 PFDN5Q99471 154 aa10.09□□□□□ -0.79
CCDC88B-201ENST00000301897 MGST2Q99735 147 aa10.09□□□□□ -0.79
CCDC88B-201ENST00000301897 PRO0255Q9UI72 69 aa10.09□□□□□ -0.79
CCDC88B-201ENST00000301897 PRELID1Q9Y255 219 aa10.09□□□□□ -0.79
CCDC88B-201ENST00000301897 MYCBP2O75592 4640 aa10.08□□□□□ -0.8
CCDC88B-201ENST00000301897 NAP1L6A6NFF2 107 aa10.08□□□□□ -0.8
CCDC88B-201ENST00000301897 KLLNB2CW77 178 aa10.08□□□□□ -0.8
CCDC88B-201ENST00000301897 SPINK4O60575 86 aa10.08□□□□□ -0.8
CCDC88B-201ENST00000301897 OR4E1P0C645 316 aa10.08□□□□□ -0.8
CCDC88B-201ENST00000301897 CAMLGP49069 296 aa10.08□□□□□ -0.8
CCDC88B-201ENST00000301897 ARL16Q0P5N6 197 aa10.08□□□□□ -0.8
CCDC88B-201ENST00000301897 MRPL23Q16540 153 aaKnown RBP10.08□□□□□ -0.8
CCDC88B-201ENST00000301897 IBA57Q5T440 356 aaKnown RBP10.08□□□□□ -0.8
CCDC88B-201ENST00000301897 SRRQ9GZT4 340 aa10.08□□□□□ -0.8
CCDC88B-201ENST00000301897 FLVCR2Q9UPI3 526 aa10.08□□□□□ -0.8
CCDC88B-201ENST00000301897 A0A087WTM6 91 aa10.07□□□□□ -0.8
CCDC88B-201ENST00000301897 MPDU1O75352 247 aa10.07□□□□□ -0.8
CCDC88B-201ENST00000301897 NMBP08949 121 aa10.07□□□□□ -0.8
CCDC88B-201ENST00000301897 PDE6HQ13956 83 aa10.07□□□□□ -0.8
CCDC88B-201ENST00000301897 ICAM4Q14773 271 aa10.07□□□□□ -0.8
CCDC88B-201ENST00000301897 MORN5Q5VZ52 161 aa10.07□□□□□ -0.8
CCDC88B-201ENST00000301897 SDHCQ99643 169 aaPredicted RBP10.07□□□□□ -0.8
CCDC88B-201ENST00000301897 VGLL1Q99990 258 aa10.07□□□□□ -0.8
CCDC88B-201ENST00000301897 NDUFA13Q9P0J0 144 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms