RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 BUB1B-PAK6H3BSN5 160 aa7.63□□□□□ -1.19
CUX1-201ENST00000292535 SELLP14151 372 aa7.63□□□□□ -1.19
CUX1-201ENST00000292535 ZNF474Q6S9Z5 364 aaPredicted RBP7.63□□□□□ -1.19
CUX1-201ENST00000292535 ZNF625Q96I27 306 aaPredicted RBP7.63□□□□□ -1.19
CUX1-201ENST00000292535 LHBP01229 141 aa7.63□□□□□ -1.19
CUX1-201ENST00000292535 UNQ6494/PRO21346Q6UXR6 183 aa7.63□□□□□ -1.19
CUX1-201ENST00000292535 MRPL52Q86TS9 123 aaKnown RBP7.63□□□□□ -1.19
CUX1-201ENST00000292535 NDUFB8O95169 186 aa7.62□□□□□ -1.19
CUX1-201ENST00000292535 DSCR8Q96T75 97 aa7.62□□□□□ -1.19
CUX1-201ENST00000292535 SRSF2Q01130 221 aaKnown RBP7.62□□□□□ -1.19
CUX1-201ENST00000292535 NMSQ5H8A3 153 aa7.62□□□□□ -1.19
CUX1-201ENST00000292535 SRRM5B3KS81 715 aa7.62□□□□□ -1.19
CUX1-201ENST00000292535 MSMBP08118 114 aa7.62□□□□□ -1.19
CUX1-201ENST00000292535 ZNF114Q8NC26 417 aa7.62□□□□□ -1.19
CUX1-201ENST00000292535 IGKV1-9A0A0C4DH69 117 aa7.62□□□□□ -1.19
CUX1-201ENST00000292535 C1QCP02747 245 aa7.62□□□□□ -1.19
CUX1-201ENST00000292535 H0YJW9 148 aa7.62□□□□□ -1.19
CUX1-201ENST00000292535 PRB3Q04118 309 aaPredicted RBP7.62□□□□□ -1.19
CUX1-201ENST00000292535 ZNF319Q9P2F9 582 aa7.62□□□□□ -1.19
CUX1-201ENST00000292535 LINC00527Q9UJ94 153 aa7.62□□□□□ -1.19
CUX1-201ENST00000292535 UBE2CO00762 179 aa7.62□□□□□ -1.19
CUX1-201ENST00000292535 GNLYP22749 145 aa7.62□□□□□ -1.19
CUX1-201ENST00000292535 GAFA1Q96PS6 74 aa7.62□□□□□ -1.19
CUX1-201ENST00000292535 LIME1Q9H400 295 aa7.62□□□□□ -1.19
CUX1-201ENST00000292535 HECTD1Q9ULT8 2610 aa7.62□□□□□ -1.19
CUX1-201ENST00000292535 F8VVB4 439 aa7.62□□□□□ -1.19
CUX1-201ENST00000292535 F8VWA3 439 aa7.62□□□□□ -1.19
CUX1-201ENST00000292535 SCRT1Q9BWW7 348 aa7.62□□□□□ -1.19
CUX1-201ENST00000292535 UBE2E2Q96LR5 201 aa7.62□□□□□ -1.19
CUX1-201ENST00000292535 PSPNO60542 156 aa7.61□□□□□ -1.19
CUX1-201ENST00000292535 MMP23AO75900 390 aa7.61□□□□□ -1.19
CUX1-201ENST00000292535 CITED1Q99966 193 aa7.61□□□□□ -1.19
CUX1-201ENST00000292535 SIGLEC9Q9Y336 463 aa7.61□□□□□ -1.19
CUX1-201ENST00000292535 A0A087WWL8 130 aa7.61□□□□□ -1.19
CUX1-201ENST00000292535 MLNRO43193 412 aa7.61□□□□□ -1.19
CUX1-201ENST00000292535 IGHV3-53P01767 116 aa7.61□□□□□ -1.19
CUX1-201ENST00000292535 FOXF2Q12947 444 aa7.61□□□□□ -1.19
CUX1-201ENST00000292535 NEGR1Q7Z3B1 354 aa7.61□□□□□ -1.19
CUX1-201ENST00000292535 TMEM243Q9BU79 118 aa7.61□□□□□ -1.19
CUX1-201ENST00000292535 ANKRD17O75179 2603 aaKnown RBP7.61□□□□□ -1.19
CUX1-201ENST00000292535 KLRD1Q13241 179 aa7.61□□□□□ -1.19
CUX1-201ENST00000292535 GAGE2AQ6NT46 116 aa7.61□□□□□ -1.19
CUX1-201ENST00000292535 WDR90Q96KV7 1748 aa7.61□□□□□ -1.19
CUX1-201ENST00000292535 OCIAD2Q56VL3 154 aa7.61□□□□□ -1.19
CUX1-201ENST00000292535 BPESC1Q9GZL8 116 aa7.61□□□□□ -1.19
CUX1-201ENST00000292535 TRAV8-3A0A0A6YYJ7 113 aa7.61□□□□□ -1.19
CUX1-201ENST00000292535 TEX48A0A1B0GUV7 120 aa7.61□□□□□ -1.19
CUX1-201ENST00000292535 LURAP1LQ8IV03 231 aa7.61□□□□□ -1.19
CUX1-201ENST00000292535 WFDC1Q9HC57 220 aa7.61□□□□□ -1.19
CUX1-201ENST00000292535 PTPRBP23467 1997 aa7.61□□□□□ -1.19
CUX1-201ENST00000292535 EXPH5Q8NEV8 1989 aa7.61□□□□□ -1.19
CUX1-201ENST00000292535 FNDC10F2Z333 226 aa7.61□□□□□ -1.19
CUX1-201ENST00000292535 CRYGSP22914 178 aa7.61□□□□□ -1.19
CUX1-201ENST00000292535 RHPN1-AS1Q9BWJ2 59 aa7.61□□□□□ -1.19
CUX1-201ENST00000292535 MSRB2Q9Y3D2 182 aa7.6□□□□□ -1.19
CUX1-201ENST00000292535 UBL5Q9BZL1 73 aa7.6□□□□□ -1.19
CUX1-201ENST00000292535 ATG2AQ2TAZ0 1938 aa7.6□□□□□ -1.19
CUX1-201ENST00000292535 hADV29S1A0JD25 119 aa7.6□□□□□ -1.19
CUX1-201ENST00000292535 PMVKQ15126 192 aa7.6□□□□□ -1.19
CUX1-201ENST00000292535 TMEM75Q8N9X5 138 aa7.6□□□□□ -1.19
CUX1-201ENST00000292535 LYNX1G3V0Z9 82 aa7.6□□□□□ -1.19
CUX1-201ENST00000292535 LYNX1P0DP58 116 aa7.6□□□□□ -1.19
CUX1-201ENST00000292535 EGR2P11161 476 aaPredicted RBP7.6□□□□□ -1.19
CUX1-201ENST00000292535 LHFPL4Q7Z7J7 247 aa7.6□□□□□ -1.19
CUX1-201ENST00000292535 A0A0G2JNJ9 132 aa7.6□□□□□ -1.19
CUX1-201ENST00000292535 SCRT2Q9NQ03 307 aa7.6□□□□□ -1.19
CUX1-201ENST00000292535 Q9UFV3 132 aa7.6□□□□□ -1.19
CUX1-201ENST00000292535 Q8TAT8 98 aa7.6□□□□□ -1.19
CUX1-201ENST00000292535 FAM110DQ8TAY7 271 aaPredicted RBP7.6□□□□□ -1.19
CUX1-201ENST00000292535 BRD3OSQ6XYD6 125 aa7.6□□□□□ -1.19
CUX1-201ENST00000292535 IGHG3P01860 377 aa7.59□□□□□ -1.19
CUX1-201ENST00000292535 PFN1P07737 140 aaKnown RBP7.59□□□□□ -1.19
CUX1-201ENST00000292535 SPXQ9BT56 116 aa7.59□□□□□ -1.19
CUX1-201ENST00000292535 ZC2HC1BQ5TFG8 222 aa7.59□□□□□ -1.19
CUX1-201ENST00000292535 LINC01619G3V211 115 aa7.59□□□□□ -1.19
CUX1-201ENST00000292535 BOD1L2Q8IYS8 172 aa7.59□□□□□ -1.19
CUX1-201ENST00000292535 ZCCHC24Q8N2G6 241 aaKnown RBP7.59□□□□□ -1.19
CUX1-201ENST00000292535 SHANK2-AS3Q9BTD1 123 aa7.59□□□□□ -1.19
CUX1-201ENST00000292535 NDPQ00604 133 aa7.59□□□□□ -1.19
CUX1-201ENST00000292535 GATA4P43694 442 aa7.59□□□□□ -1.19
CUX1-201ENST00000292535 C10orf55Q5SWW7 151 aa7.59□□□□□ -1.19
CUX1-201ENST00000292535 Q86TA4 180 aa7.59□□□□□ -1.19
CUX1-201ENST00000292535 HIST3H2BBQ8N257 126 aa7.59□□□□□ -1.19
CUX1-201ENST00000292535 A0A087X0K7 114 aa7.59□□□□□ -1.19
CUX1-201ENST00000292535 DEFB131AP59861 70 aa7.59□□□□□ -1.19
CUX1-201ENST00000292535 TRBV6-6A0A0A6YYG2 114 aa7.59□□□□□ -1.19
CUX1-201ENST00000292535 SIP14410 1827 aa7.59□□□□□ -1.19
CUX1-201ENST00000292535 SYS1-DBNDD2H3BUS1 97 aa7.59□□□□□ -1.19
CUX1-201ENST00000292535 TBX6O95947 436 aaPredicted RBP7.59□□□□□ -1.19
CUX1-201ENST00000292535 VWC2Q2TAL6 325 aa7.59□□□□□ -1.19
CUX1-201ENST00000292535 NCR2O95944 276 aa7.58□□□□□ -1.2
CUX1-201ENST00000292535 SIPA1L1O43166 1804 aa7.58□□□□□ -1.2
CUX1-201ENST00000292535 SLAQ13239 276 aa7.58□□□□□ -1.2
CUX1-201ENST00000292535 ZNF329Q86UD4 541 aa7.58□□□□□ -1.2
CUX1-201ENST00000292535 UTF1Q5T230 341 aa7.58□□□□□ -1.2
CUX1-201ENST00000292535 ZMAT4Q9H898 229 aa7.58□□□□□ -1.2
CUX1-201ENST00000292535 C1orf122Q6ZSJ8 110 aa7.58□□□□□ -1.2
CUX1-201ENST00000292535 hDV102S1A0JD36 115 aa7.58□□□□□ -1.2
CUX1-201ENST00000292535 FAM231BA6NCW3 169 aa7.58□□□□□ -1.2
CUX1-201ENST00000292535 LINC01551Q86U37 167 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms