RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 LOC102724200A0A096LPH7 203 aaPredicted RBP15.59■□□□□ 0.09
VPS53-201ENST00000291074 CLEC3BP05452 202 aa15.59■□□□□ 0.09
VPS53-201ENST00000291074 ATOH7Q8N100 152 aa15.59■□□□□ 0.09
VPS53-201ENST00000291074 TMSB15BA0A087X1C1 80 aa15.58■□□□□ 0.08
VPS53-201ENST00000291074 HAX1O00165 279 aa15.58■□□□□ 0.08
VPS53-201ENST00000291074 DLEU1O43261 78 aa15.58■□□□□ 0.08
VPS53-201ENST00000291074 CSN1S1P47710 185 aa15.58■□□□□ 0.08
VPS53-201ENST00000291074 Q8TAT8 98 aa15.58■□□□□ 0.08
VPS53-201ENST00000291074 FAM181BA6NEQ2 426 aa15.58■□□□□ 0.08
VPS53-201ENST00000291074 PSG9Q00887 426 aa15.58■□□□□ 0.08
VPS53-201ENST00000291074 EBLN2Q6P2I7 272 aa15.58■□□□□ 0.08
VPS53-201ENST00000291074 CCDC140Q96MF4 163 aa15.58■□□□□ 0.08
VPS53-201ENST00000291074 TXN2Q99757 166 aa15.58■□□□□ 0.08
VPS53-201ENST00000291074 IGHV3-66A0A0C4DH42 116 aa15.57■□□□□ 0.08
VPS53-201ENST00000291074 A0A1B0GUT8 65 aa15.57■□□□□ 0.08
VPS53-201ENST00000291074 SCGB2A1O75556 95 aa15.57■□□□□ 0.08
VPS53-201ENST00000291074 BRD3OSQ6XYD6 125 aa15.57■□□□□ 0.08
VPS53-201ENST00000291074 CLEC5AQ9NY25 188 aa15.57■□□□□ 0.08
VPS53-201ENST00000291074 CELSR2Q9HCU4 2923 aa15.57■□□□□ 0.08
VPS53-201ENST00000291074 IGHG4P01861 327 aa15.57■□□□□ 0.08
VPS53-201ENST00000291074 CT45A10P0DMU9 189 aa15.57■□□□□ 0.08
VPS53-201ENST00000291074 RAB4AP20338 218 aa15.57■□□□□ 0.08
VPS53-201ENST00000291074 CLEC19AQ6UXS0 136 aa15.57■□□□□ 0.08
VPS53-201ENST00000291074 TMEM190Q8WZ59 177 aa15.57■□□□□ 0.08
VPS53-201ENST00000291074 ZFAND3Q9H8U3 227 aa15.57■□□□□ 0.08
VPS53-201ENST00000291074 UTP20O75691 2785 aaKnown RBP15.57■□□□□ 0.08
VPS53-201ENST00000291074 IGHV4-61A0A0C4DH41 118 aa15.56■□□□□ 0.08
VPS53-201ENST00000291074 C5orf56Q8N8D9 126 aa15.56■□□□□ 0.08
VPS53-201ENST00000291074 VGLL1Q99990 258 aa15.56■□□□□ 0.08
VPS53-201ENST00000291074 LINC00527Q9UJ94 153 aa15.56■□□□□ 0.08
VPS53-201ENST00000291074 CBY1Q9Y3M2 126 aa15.56■□□□□ 0.08
VPS53-201ENST00000291074 IGHV3OR16-13A0A075B7E8 117 aa15.56■□□□□ 0.08
VPS53-201ENST00000291074 IGHV3-74A0A0B4J1X5 117 aa15.56■□□□□ 0.08
VPS53-201ENST00000291074 USP9XQ93008 2570 aaPredicted RBP15.56■□□□□ 0.08
VPS53-201ENST00000291074 MIEN1Q9BRT3 115 aa15.56■□□□□ 0.08
VPS53-201ENST00000291074 ZNF138P52744 262 aa15.55■□□□□ 0.08
VPS53-201ENST00000291074 SH2D1AO60880 128 aa15.55■□□□□ 0.08
VPS53-201ENST00000291074 SPATA45Q537H7 98 aa15.55■□□□□ 0.08
VPS53-201ENST00000291074 CRYBG3Q68DQ2 2970 aa15.55■□□□□ 0.08
VPS53-201ENST00000291074 MAJINQ3KP22 176 aa15.54■□□□□ 0.08
VPS53-201ENST00000291074 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP15.54■□□□□ 0.08
VPS53-201ENST00000291074 TRAV40A0A0B4J280 105 aa15.54■□□□□ 0.08
VPS53-201ENST00000291074 CTRLP40313 264 aa15.54■□□□□ 0.08
VPS53-201ENST00000291074 BATFQ16520 125 aa15.54■□□□□ 0.08
VPS53-201ENST00000291074 DMRTA1Q5VZB9 504 aa15.54■□□□□ 0.08
VPS53-201ENST00000291074 IGHV3-49A0A0A0MS15 119 aa15.53■□□□□ 0.08
VPS53-201ENST00000291074 PAX8Q06710 450 aa15.53■□□□□ 0.08
VPS53-201ENST00000291074 SPATA12Q7Z6I5 190 aa15.53■□□□□ 0.08
VPS53-201ENST00000291074 PRR25Q96S07 402 aa15.53■□□□□ 0.08
VPS53-201ENST00000291074 C2orf70A6NJV1 201 aa15.53■□□□□ 0.08
VPS53-201ENST00000291074 ZNF207O43670 478 aaKnown RBP15.53■□□□□ 0.08
VPS53-201ENST00000291074 IGHV1-24A0A0C4DH33 117 aa15.52■□□□□ 0.08
VPS53-201ENST00000291074 MUC21A0A0G2JKD1 596 aa15.52■□□□□ 0.08
VPS53-201ENST00000291074 MUC21A0A140T8X8 626 aa15.52■□□□□ 0.08
VPS53-201ENST00000291074 CLPSL1A2RUU4 121 aa15.52■□□□□ 0.08
VPS53-201ENST00000291074 ZNF80P51504 273 aaPredicted RBP15.52■□□□□ 0.08
VPS53-201ENST00000291074 RIGQ13278 110 aa15.52■□□□□ 0.08
VPS53-201ENST00000291074 MUC21Q5SSG8 566 aa15.52■□□□□ 0.08
VPS53-201ENST00000291074 LINC00173Q6ZV60 143 aa15.52■□□□□ 0.08
VPS53-201ENST00000291074 CCL19Q99731 98 aa15.52■□□□□ 0.08
VPS53-201ENST00000291074 NDFIP1Q9BT67 221 aa15.52■□□□□ 0.08
VPS53-201ENST00000291074 CSN3P07498 182 aa15.52■□□□□ 0.07
VPS53-201ENST00000291074 RNF182Q8N6D2 247 aa15.52■□□□□ 0.07
VPS53-201ENST00000291074 SERTM2A0A1B0GWG4 89 aa15.51■□□□□ 0.07
VPS53-201ENST00000291074 TMEM189A5PLL7 270 aa15.51■□□□□ 0.07
VPS53-201ENST00000291074 BUB3O43684 328 aa15.51■□□□□ 0.07
VPS53-201ENST00000291074 PIFOQ8TCI5 191 aa15.51■□□□□ 0.07
VPS53-201ENST00000291074 DOPEY1Q5JWR5 2465 aa15.51■□□□□ 0.07
VPS53-201ENST00000291074 IGHV1-69DA0A0B4J2H0 117 aa15.51■□□□□ 0.07
VPS53-201ENST00000291074 PRAC2D3DTV9 90 aa15.51■□□□□ 0.07
VPS53-201ENST00000291074 IGHV1-69P01742 117 aa15.51■□□□□ 0.07
VPS53-201ENST00000291074 RPLP1P05386 114 aaKnown RBP15.51■□□□□ 0.07
VPS53-201ENST00000291074 KLK9Q2XQG4 91 aa15.51■□□□□ 0.07
VPS53-201ENST00000291074 FAM162BQ5T6X4 162 aa15.51■□□□□ 0.07
VPS53-201ENST00000291074 LYZL1Q6UWQ5 148 aa15.51■□□□□ 0.07
VPS53-201ENST00000291074 PIMREGQ9BSJ6 248 aa15.51■□□□□ 0.07
VPS53-201ENST00000291074 KLK9Q9UKQ9 250 aa15.51■□□□□ 0.07
VPS53-201ENST00000291074 TFPI2P48307 235 aa15.51■□□□□ 0.07
VPS53-201ENST00000291074 TMEM213A2RRL7 107 aa15.5■□□□□ 0.07
VPS53-201ENST00000291074 GOSR1O95249 250 aa15.5■□□□□ 0.07
VPS53-201ENST00000291074 LINC00614P0C842 121 aa15.5■□□□□ 0.07
VPS53-201ENST00000291074 ERCC8Q13216 396 aa15.5■□□□□ 0.07
VPS53-201ENST00000291074 EEF1AKMT3Q96AZ1 226 aa15.5■□□□□ 0.07
VPS53-201ENST00000291074 IGHV4-38-2P0DP08 117 aa15.5■□□□□ 0.07
VPS53-201ENST00000291074 MOB4Q9Y3A3 225 aa15.5■□□□□ 0.07
VPS53-201ENST00000291074 ACACBO00763 2458 aa15.49■□□□□ 0.07
VPS53-201ENST00000291074 C10orf105Q8TEF2 133 aa15.49■□□□□ 0.07
VPS53-201ENST00000291074 CHCHD1Q96BP2 118 aaKnown RBP15.49■□□□□ 0.07
VPS53-201ENST00000291074 SAPCD1Q5SSQ6 148 aa15.49■□□□□ 0.07
VPS53-201ENST00000291074 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa15.49■□□□□ 0.07
VPS53-201ENST00000291074 MYO18BQ8IUG5 2567 aa15.48■□□□□ 0.07
VPS53-201ENST00000291074 IGHV4-30-2A0A087WSY4 118 aa15.48■□□□□ 0.07
VPS53-201ENST00000291074 LY6EQ16553 131 aa15.48■□□□□ 0.07
VPS53-201ENST00000291074 Q6AWC8 147 aa15.48■□□□□ 0.07
VPS53-201ENST00000291074 TRAV41A0A0B4J266 112 aa15.47■□□□□ 0.07
VPS53-201ENST00000291074 GATD1Q8NB37 220 aa15.47■□□□□ 0.07
VPS53-201ENST00000291074 CSMD2Q7Z408 3487 aa15.47■□□□□ 0.07
VPS53-201ENST00000291074 COX8CQ7Z4L0 72 aa15.47■□□□□ 0.07
VPS53-201ENST00000291074 TIMM8BQ9Y5J9 83 aaPredicted RBP15.47■□□□□ 0.07
VPS53-201ENST00000291074 IGLC3P0DOY3 106 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms