RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 PRAC2D3DTV9 90 aa8.92□□□□□ -0.98
CD44-203ENST00000278386 RLN2P04090 185 aa8.92□□□□□ -0.98
CD44-203ENST00000278386 CAMLGP49069 296 aa8.92□□□□□ -0.98
CD44-203ENST00000278386 RAB31Q13636 194 aa8.92□□□□□ -0.98
CD44-203ENST00000278386 MORN5Q5VZ52 161 aa8.92□□□□□ -0.98
CD44-203ENST00000278386 SSX7Q7RTT5 188 aa8.92□□□□□ -0.98
CD44-203ENST00000278386 GNPNAT1Q96EK6 184 aaPredicted RBP8.92□□□□□ -0.98
CD44-203ENST00000278386 HSPG2P98160 4391 aa8.91□□□□□ -0.98
CD44-203ENST00000278386 TRAV26-1A0A087WT03 109 aa8.91□□□□□ -0.98
CD44-203ENST00000278386 A0A0J9YY99 117 aa8.91□□□□□ -0.98
CD44-203ENST00000278386 UBE2L5PA0A1B0GUS4 154 aa8.91□□□□□ -0.98
CD44-203ENST00000278386 GAGE12BA1L429 117 aa8.91□□□□□ -0.98
CD44-203ENST00000278386 C5orf51A6NDU8 294 aa8.91□□□□□ -0.98
CD44-203ENST00000278386 PLA2G10O15496 165 aa8.91□□□□□ -0.98
CD44-203ENST00000278386 GAGE7O76087 117 aa8.91□□□□□ -0.98
CD44-203ENST00000278386 GAGE12FP0CL80 117 aa8.91□□□□□ -0.98
CD44-203ENST00000278386 GAGE12GP0CL81 117 aa8.91□□□□□ -0.98
CD44-203ENST00000278386 GAGE12IP0CL82 117 aa8.91□□□□□ -0.98
CD44-203ENST00000278386 LEPP41159 167 aa8.91□□□□□ -0.98
CD44-203ENST00000278386 CNPY1Q3B7I2 92 aa8.91□□□□□ -0.98
CD44-203ENST00000278386 MIC13Q5XKP0 118 aa8.91□□□□□ -0.98
CD44-203ENST00000278386 Q6ZRG5 221 aa8.91□□□□□ -0.98
CD44-203ENST00000278386 NRARPQ7Z6K4 114 aa8.91□□□□□ -0.98
CD44-203ENST00000278386 OR1L4Q8NGR5 311 aa8.91□□□□□ -0.98
CD44-203ENST00000278386 TMEM37Q8WXS4 190 aa8.91□□□□□ -0.98
CD44-203ENST00000278386 TRAV12-3A0A0B4J271 114 aa8.9□□□□□ -0.98
CD44-203ENST00000278386 A6NHS1 94 aa8.9□□□□□ -0.98
CD44-203ENST00000278386 CST7O76096 145 aa8.9□□□□□ -0.98
CD44-203ENST00000278386 IGLC2P0DOY2 106 aa8.9□□□□□ -0.98
CD44-203ENST00000278386 M6PRP20645 277 aa8.9□□□□□ -0.98
CD44-203ENST00000278386 S100A10P60903 97 aa8.9□□□□□ -0.98
CD44-203ENST00000278386 BAXQ07812 192 aa8.9□□□□□ -0.98
CD44-203ENST00000278386 PFDN5Q99471 154 aa8.9□□□□□ -0.98
CD44-203ENST00000278386 UQCC1Q9NVA1 299 aa8.9□□□□□ -0.98
CD44-203ENST00000278386 LRP1BQ9NZR2 4599 aa8.9□□□□□ -0.98
CD44-203ENST00000278386 TRAV6A0A075B6T7 132 aa8.89□□□□□ -0.99
CD44-203ENST00000278386 TRAV5A0A0B4J249 113 aa8.89□□□□□ -0.99
CD44-203ENST00000278386 H3BQ15 152 aa8.89□□□□□ -0.99
CD44-203ENST00000278386 LYRM1O43325 122 aa8.89□□□□□ -0.99
CD44-203ENST00000278386 PVALBP20472 110 aaPredicted RBP8.89□□□□□ -0.99
CD44-203ENST00000278386 TTC32Q5I0X7 151 aa8.89□□□□□ -0.99
CD44-203ENST00000278386 RXFP4Q8TDU9 374 aa8.89□□□□□ -0.99
CD44-203ENST00000278386 ODF3Q96PU9 254 aa8.89□□□□□ -0.99
CD44-203ENST00000278386 SEC22CQ9BRL7 303 aa8.89□□□□□ -0.99
CD44-203ENST00000278386 DNAJC4Q9NNZ3 241 aa8.89□□□□□ -0.99
CD44-203ENST00000278386 FAM24AA6NFZ4 105 aa8.88□□□□□ -0.99
CD44-203ENST00000278386 NPIPB6E9PJ23 425 aa8.88□□□□□ -0.99
CD44-203ENST00000278386 CT45A10P0DMU9 189 aa8.88□□□□□ -0.99
CD44-203ENST00000278386 GUK1Q16774 197 aa8.88□□□□□ -0.99
CD44-203ENST00000278386 STX12Q86Y82 276 aa8.88□□□□□ -0.99
CD44-203ENST00000278386 LINC00612Q8N6U2 182 aa8.88□□□□□ -0.99
CD44-203ENST00000278386 SAT2Q96F10 170 aaPredicted RBP8.88□□□□□ -0.99
CD44-203ENST00000278386 PYGO2Q9BRQ0 406 aa8.88□□□□□ -0.99
CD44-203ENST00000278386 TMPRSS5Q9H3S3 457 aa8.88□□□□□ -0.99
CD44-203ENST00000278386 Q9H8V8 135 aa8.88□□□□□ -0.99
CD44-203ENST00000278386 NUDT15Q9NV35 164 aa8.88□□□□□ -0.99
CD44-203ENST00000278386 WDR83OSQ9Y284 106 aa8.88□□□□□ -0.99
CD44-203ENST00000278386 TCRBP04435 133 aa8.87□□□□□ -0.99
CD44-203ENST00000278386 HOXA5P20719 270 aa8.87□□□□□ -0.99
CD44-203ENST00000278386 FGF7P21781 194 aa8.87□□□□□ -0.99
CD44-203ENST00000278386 C12orf45Q8N5I9 185 aaPredicted RBP8.87□□□□□ -0.99
CD44-203ENST00000278386 ZNF431Q8TF32 576 aaPredicted RBP8.87□□□□□ -0.99
CD44-203ENST00000278386 SLC39A9Q9NUM3 307 aa8.87□□□□□ -0.99
CD44-203ENST00000278386 ZNF586Q9NXT0 402 aa8.87□□□□□ -0.99
CD44-203ENST00000278386 TRGV2A0A075B6R0 118 aa8.86□□□□□ -0.99
CD44-203ENST00000278386 M0R3E3 92 aa8.86□□□□□ -0.99
CD44-203ENST00000278386 RPL29P47914 159 aaKnown RBP8.86□□□□□ -0.99
CD44-203ENST00000278386 SULT1A1P50225 295 aa8.86□□□□□ -0.99
CD44-203ENST00000278386 HBG1P69891 147 aa8.86□□□□□ -0.99
CD44-203ENST00000278386 HBG2P69892 147 aa8.86□□□□□ -0.99
CD44-203ENST00000278386 ERCC8Q13216 396 aa8.86□□□□□ -0.99
CD44-203ENST00000278386 Q6ZTI0 123 aa8.86□□□□□ -0.99
CD44-203ENST00000278386 ZNF680Q8NEM1 530 aa8.86□□□□□ -0.99
CD44-203ENST00000278386 MRPL53Q96EL3 112 aaKnown RBP8.86□□□□□ -0.99
CD44-203ENST00000278386 ZNF503Q96F45 646 aa8.86□□□□□ -0.99
CD44-203ENST00000278386 C2orf50Q96LR7 162 aa8.86□□□□□ -0.99
CD44-203ENST00000278386 KRTAP4-5Q9BYR2 181 aa8.86□□□□□ -0.99
CD44-203ENST00000278386 C11orf1Q9H5F2 150 aa8.86□□□□□ -0.99
CD44-203ENST00000278386 LYRM2Q9NU23 88 aaPredicted RBP8.86□□□□□ -0.99
CD44-203ENST00000278386 TIMM9Q9Y5J7 89 aa8.86□□□□□ -0.99
CD44-203ENST00000278386 TRBV19A0A075B6N1 114 aa8.85□□□□□ -0.99
CD44-203ENST00000278386 TRGV1A0A0A0MS02 117 aa8.85□□□□□ -0.99
CD44-203ENST00000278386 IGSF23A1L1A6 192 aa8.85□□□□□ -0.99
CD44-203ENST00000278386 C7orf71A4D174 169 aa8.85□□□□□ -0.99
CD44-203ENST00000278386 ZNF253O75346 499 aa8.85□□□□□ -0.99
CD44-203ENST00000278386 CDK2AP2O75956 126 aa8.85□□□□□ -0.99
CD44-203ENST00000278386 SLC25A5P05141 298 aaKnown RBP8.85□□□□□ -0.99
CD44-203ENST00000278386 S100A11P31949 105 aa8.85□□□□□ -0.99
CD44-203ENST00000278386 BTN1A1Q13410 526 aa8.85□□□□□ -0.99
CD44-203ENST00000278386 VWC2Q2TAL6 325 aa8.85□□□□□ -0.99
CD44-203ENST00000278386 SPATA12Q7Z6I5 190 aa8.85□□□□□ -0.99
CD44-203ENST00000278386 MAPKAPK5-AS1Q8N8E1 139 aa8.85□□□□□ -0.99
CD44-203ENST00000278386 BLNKQ8WV28 456 aa8.85□□□□□ -0.99
CD44-203ENST00000278386 KRTAP1-5Q9BYS1 174 aa8.85□□□□□ -0.99
CD44-203ENST00000278386 Q9H3A6 140 aa8.85□□□□□ -0.99
CD44-203ENST00000278386 GPN1Q9HCN4 374 aaPredicted RBP8.85□□□□□ -0.99
CD44-203ENST00000278386 MRPS16Q9Y3D3 137 aaKnown RBP8.85□□□□□ -0.99
CD44-203ENST00000278386 H3BNG1 76 aa8.84□□□□□ -0.99
CD44-203ENST00000278386 H2AFB2P0C5Z0 115 aa8.84□□□□□ -0.99
CD44-203ENST00000278386 PYYP10082 97 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms