RNA–Protein interactions for RNA: ENST00000276573.11

TRIM55-201, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 1,960 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-201ENST00000276573 VPS13CQ709C8 3753 aa7.36□□□□□ -1.23
TRIM55-201ENST00000276573 IGKV2-40A0A087WW87 121 aaPredicted RBP7.36□□□□□ -1.23
TRIM55-201ENST00000276573 FAM231BA6NCW3 169 aa7.36□□□□□ -1.23
TRIM55-201ENST00000276573 HIGD1CA8MV81 97 aa7.36□□□□□ -1.23
TRIM55-201ENST00000276573 ZNF705FA8MVS1 300 aaPredicted RBP7.36□□□□□ -1.23
TRIM55-201ENST00000276573 IGKV2D-40P01614 121 aaPredicted RBP7.36□□□□□ -1.23
TRIM55-201ENST00000276573 CRIP1P50238 77 aa7.36□□□□□ -1.23
TRIM55-201ENST00000276573 RAB4BP61018 213 aa7.36□□□□□ -1.23
TRIM55-201ENST00000276573 LCNL1Q6ZST4 164 aa7.36□□□□□ -1.23
TRIM55-201ENST00000276573 TCF24Q7RTU0 167 aa7.36□□□□□ -1.23
TRIM55-201ENST00000276573 HIST1H2BLQ99880 126 aa7.36□□□□□ -1.23
TRIM55-201ENST00000276573 SLC50A1Q9BRV3 221 aa7.36□□□□□ -1.23
TRIM55-201ENST00000276573 GFRA4Q9GZZ7 299 aa7.36□□□□□ -1.23
TRIM55-201ENST00000276573 PRDM13Q9H4Q3 707 aa7.36□□□□□ -1.23
TRIM55-201ENST00000276573 VPREB3Q9UKI3 123 aa7.36□□□□□ -1.23
TRIM55-201ENST00000276573 MAP1AP78559 2803 aaPredicted RBP7.36□□□□□ -1.23
TRIM55-201ENST00000276573 CSMD1Q96PZ7 3565 aa7.36□□□□□ -1.23
TRIM55-201ENST00000276573 HLA-DQA1P01909 254 aa7.35□□□□□ -1.23
TRIM55-201ENST00000276573 CRISP2P16562 243 aa7.35□□□□□ -1.23
TRIM55-201ENST00000276573 TMEM95Q3KNT9 176 aa7.35□□□□□ -1.23
TRIM55-201ENST00000276573 SAPCD1Q5SSQ6 148 aa7.35□□□□□ -1.23
TRIM55-201ENST00000276573 UNQ9165/PRO28630Q6UXU0 137 aa7.35□□□□□ -1.23
TRIM55-201ENST00000276573 COX8CQ7Z4L0 72 aa7.35□□□□□ -1.23
TRIM55-201ENST00000276573 OR2D3Q8NGH3 330 aa7.35□□□□□ -1.23
TRIM55-201ENST00000276573 GTSF1Q8WW33 167 aa7.35□□□□□ -1.23
TRIM55-201ENST00000276573 C8orf49Q96NF6 230 aa7.35□□□□□ -1.23
TRIM55-201ENST00000276573 USP9YO00507 2555 aaPredicted RBP7.35□□□□□ -1.23
TRIM55-201ENST00000276573 SVEP1Q4LDE5 3571 aa7.35□□□□□ -1.23
TRIM55-201ENST00000276573 TMEM89A2RUT3 159 aa7.35□□□□□ -1.23
TRIM55-201ENST00000276573 AMBPP02760 352 aa7.35□□□□□ -1.23
TRIM55-201ENST00000276573 PSMB8P28062 276 aa7.35□□□□□ -1.23
TRIM55-201ENST00000276573 GDF5OSQ5U4N7 250 aa7.35□□□□□ -1.23
TRIM55-201ENST00000276573 ATP5L2Q7Z4Y8 100 aa7.35□□□□□ -1.23
TRIM55-201ENST00000276573 TMEM256Q8N2U0 113 aa7.35□□□□□ -1.23
TRIM55-201ENST00000276573 GLMPQ8WWB7 406 aa7.35□□□□□ -1.23
TRIM55-201ENST00000276573 PRR25Q96S07 402 aa7.35□□□□□ -1.23
TRIM55-201ENST00000276573 VGLL1Q99990 258 aa7.35□□□□□ -1.23
TRIM55-201ENST00000276573 POLQO75417 2590 aa7.35□□□□□ -1.23
TRIM55-201ENST00000276573 TRAV8-2A0A0B4J237 113 aa7.34□□□□□ -1.23
TRIM55-201ENST00000276573 A0A1B0GXF2 115 aa7.34□□□□□ -1.23
TRIM55-201ENST00000276573 GRIFINA4D1Z8 144 aa7.34□□□□□ -1.23
TRIM55-201ENST00000276573 PRAC2D3DTV9 90 aa7.34□□□□□ -1.23
TRIM55-201ENST00000276573 SMAD7O15105 426 aaKnown RBP7.34□□□□□ -1.23
TRIM55-201ENST00000276573 NUPR1O60356 82 aa7.34□□□□□ -1.23
TRIM55-201ENST00000276573 APCSP02743 223 aa7.34□□□□□ -1.23
TRIM55-201ENST00000276573 FOXA3P55318 350 aaPredicted RBP7.34□□□□□ -1.23
TRIM55-201ENST00000276573 Q0VG73 95 aa7.34□□□□□ -1.23
TRIM55-201ENST00000276573 KIAA1644Q3SXP7 199 aa7.34□□□□□ -1.23
TRIM55-201ENST00000276573 FAM209BQ5JX69 171 aa7.34□□□□□ -1.23
TRIM55-201ENST00000276573 RBPMS2Q6ZRY4 209 aaKnown RBP7.34□□□□□ -1.23
TRIM55-201ENST00000276573 PGLYRP4Q96LB8 373 aa7.34□□□□□ -1.23
TRIM55-201ENST00000276573 NPFFR1Q9GZQ6 430 aa7.34□□□□□ -1.23
TRIM55-201ENST00000276573 PEF1Q9UBV8 284 aaKnown RBP7.34□□□□□ -1.23
TRIM55-201ENST00000276573 CELSR1Q9NYQ6 3014 aa7.34□□□□□ -1.23
TRIM55-201ENST00000276573 KMT2BQ9UMN6 2715 aaPredicted RBP7.34□□□□□ -1.23
TRIM55-201ENST00000276573 PRRC2AP48634 2157 aaKnown RBP7.33□□□□□ -1.24
TRIM55-201ENST00000276573 A0A1B0GUS0 222 aa7.33□□□□□ -1.24
TRIM55-201ENST00000276573 HOXA3O43365 443 aaPredicted RBP7.33□□□□□ -1.24
TRIM55-201ENST00000276573 CT45A10P0DMU9 189 aa7.33□□□□□ -1.24
TRIM55-201ENST00000276573 GZMBP10144 247 aa7.33□□□□□ -1.24
TRIM55-201ENST00000276573 PYY3Q5JQD4 70 aa7.33□□□□□ -1.24
TRIM55-201ENST00000276573 C8orf86Q6ZUL3 223 aa7.33□□□□□ -1.24
TRIM55-201ENST00000276573 RNF182Q8N6D2 247 aa7.33□□□□□ -1.24
TRIM55-201ENST00000276573 WFDC11Q8NEX6 87 aa7.33□□□□□ -1.24
TRIM55-201ENST00000276573 MRPL53Q96EL3 112 aaKnown RBP7.33□□□□□ -1.24
TRIM55-201ENST00000276573 PACRGQ96M98 296 aaPredicted RBP7.33□□□□□ -1.24
TRIM55-201ENST00000276573 NIT2Q9NQR4 276 aa7.33□□□□□ -1.24
TRIM55-201ENST00000276573 TP53TG3Q9ULZ0 132 aa7.33□□□□□ -1.24
TRIM55-201ENST00000276573 PTPN13Q12923 2485 aa7.33□□□□□ -1.24
TRIM55-201ENST00000276573 CSPG4Q6UVK1 2322 aa7.33□□□□□ -1.24
TRIM55-201ENST00000276573 RBAKDNA6NC62 111 aa7.33□□□□□ -1.24
TRIM55-201ENST00000276573 C10orf99Q6UWK7 81 aa7.33□□□□□ -1.24
TRIM55-201ENST00000276573 TMEM18Q96B42 140 aa7.33□□□□□ -1.24
TRIM55-201ENST00000276573 CLEC5AQ9NY25 188 aa7.33□□□□□ -1.24
TRIM55-201ENST00000276573 CENPEQ02224 2701 aa7.32□□□□□ -1.24
TRIM55-201ENST00000276573 A0A1W2PS18 150 aa7.32□□□□□ -1.24
TRIM55-201ENST00000276573 PCP4L1A6NKN8 68 aa7.32□□□□□ -1.24
TRIM55-201ENST00000276573 A8MWP6 167 aa7.32□□□□□ -1.24
TRIM55-201ENST00000276573 SH2D1AO60880 128 aa7.32□□□□□ -1.24
TRIM55-201ENST00000276573 CAMPP49913 170 aa7.32□□□□□ -1.24
TRIM55-201ENST00000276573 ERCC8Q13216 396 aa7.32□□□□□ -1.24
TRIM55-201ENST00000276573 SLAQ13239 276 aa7.32□□□□□ -1.24
TRIM55-201ENST00000276573 Q8TAT8 98 aa7.32□□□□□ -1.24
TRIM55-201ENST00000276573 ZNF702PQ9H963 129 aa7.32□□□□□ -1.24
TRIM55-201ENST00000276573 K7EMT4 169 aa7.31□□□□□ -1.24
TRIM55-201ENST00000276573 ESDP10768 282 aa7.31□□□□□ -1.24
TRIM55-201ENST00000276573 LINC00310P59036 64 aa7.31□□□□□ -1.24
TRIM55-201ENST00000276573 HBBP68871 147 aa7.31□□□□□ -1.24
TRIM55-201ENST00000276573 FAM106AQ4KMX7 169 aa7.31□□□□□ -1.24
TRIM55-201ENST00000276573 OR10J3Q5JRS4 329 aa7.31□□□□□ -1.24
TRIM55-201ENST00000276573 FAM162BQ5T6X4 162 aa7.31□□□□□ -1.24
TRIM55-201ENST00000276573 BAGE3Q86Y29 109 aa7.31□□□□□ -1.24
TRIM55-201ENST00000276573 GPHB5Q86YW7 130 aa7.31□□□□□ -1.24
TRIM55-201ENST00000276573 AGPAT4-IT1Q9H0P7 198 aa7.31□□□□□ -1.24
TRIM55-201ENST00000276573 IGHV7-4-1A0A0J9YVY3 117 aa7.31□□□□□ -1.24
TRIM55-201ENST00000276573 TMEM189A5PLL7 270 aa7.31□□□□□ -1.24
TRIM55-201ENST00000276573 F2Z2F3 143 aa7.31□□□□□ -1.24
TRIM55-201ENST00000276573 HAX1O00165 279 aa7.31□□□□□ -1.24
TRIM55-201ENST00000276573 SRIP30626 198 aa7.31□□□□□ -1.24
TRIM55-201ENST00000276573 BMI1P35226 326 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms