RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 ZNF562Q6V9R5 426 aa13.01□□□□□ -0.33
VPS54-201ENST00000272322 LCNL1Q6ZST4 164 aa13.01□□□□□ -0.33
VPS54-201ENST00000272322 OR11H6Q8NGC7 330 aa13.01□□□□□ -0.33
VPS54-201ENST00000272322 K7EQM0 130 aa13□□□□□ -0.33
VPS54-201ENST00000272322 NCR2O95944 276 aa13□□□□□ -0.33
VPS54-201ENST00000272322 ORM1P02763 201 aa13□□□□□ -0.33
VPS54-201ENST00000272322 COX19Q49B96 90 aa13□□□□□ -0.33
VPS54-201ENST00000272322 OR4B1Q8NGF8 309 aa13□□□□□ -0.33
VPS54-201ENST00000272322 ATP6V0E1O15342 81 aa13□□□□□ -0.33
VPS54-201ENST00000272322 IGLC2P0DOY2 106 aa13□□□□□ -0.33
VPS54-201ENST00000272322 IGLL1P15814 213 aa13□□□□□ -0.33
VPS54-201ENST00000272322 HOXB4P17483 251 aaPredicted RBP13□□□□□ -0.33
VPS54-201ENST00000272322 AMN1Q8IY45 258 aa13□□□□□ -0.33
VPS54-201ENST00000272322 IGHV7-81A0A0B4J1V7 117 aa13□□□□□ -0.33
VPS54-201ENST00000272322 A0A1B0GUT8 65 aa13□□□□□ -0.33
VPS54-201ENST00000272322 A0A1B0GXF2 115 aa13□□□□□ -0.33
VPS54-201ENST00000272322 CSN1S1P47710 185 aa13□□□□□ -0.33
VPS54-201ENST00000272322 DEFB1P60022 68 aa13□□□□□ -0.33
VPS54-201ENST00000272322 PRSS3P2Q8NHM4 247 aa13□□□□□ -0.33
VPS54-201ENST00000272322 IGHV1-24A0A0C4DH33 117 aa12.99□□□□□ -0.33
VPS54-201ENST00000272322 F8W735 103 aaPredicted RBP12.99□□□□□ -0.33
VPS54-201ENST00000272322 NPSP0C0P6 89 aa12.99□□□□□ -0.33
VPS54-201ENST00000272322 LINC00614P0C842 121 aa12.99□□□□□ -0.33
VPS54-201ENST00000272322 BTF3P20290 206 aaKnown RBP12.99□□□□□ -0.33
VPS54-201ENST00000272322 RHOGP84095 191 aa12.99□□□□□ -0.33
VPS54-201ENST00000272322 PSG3Q16557 428 aa12.99□□□□□ -0.33
VPS54-201ENST00000272322 LYZL1Q6UWQ5 148 aa12.99□□□□□ -0.33
VPS54-201ENST00000272322 STPG4Q8N801 248 aa12.99□□□□□ -0.33
VPS54-201ENST00000272322 C20orf144Q9BQM9 153 aa12.99□□□□□ -0.33
VPS54-201ENST00000272322 MSRB1Q9NZV6 116 aa12.99□□□□□ -0.33
VPS54-201ENST00000272322 PRAC2D3DTV9 90 aa12.99□□□□□ -0.33
VPS54-201ENST00000272322 APOHP02749 345 aaPredicted RBP12.99□□□□□ -0.33
VPS54-201ENST00000272322 CTSGP08311 255 aa12.99□□□□□ -0.33
VPS54-201ENST00000272322 IGLV11-55A0A075B6I3 123 aa12.98□□□□□ -0.33
VPS54-201ENST00000272322 OR4C46A6NHA9 309 aa12.98□□□□□ -0.33
VPS54-201ENST00000272322 IGLC3P0DOY3 106 aa12.98□□□□□ -0.33
VPS54-201ENST00000272322 PLP1P60201 277 aa12.98□□□□□ -0.33
VPS54-201ENST00000272322 RPLP1P05386 114 aaKnown RBP12.98□□□□□ -0.33
VPS54-201ENST00000272322 LOXL1Q08397 574 aaPredicted RBP12.98□□□□□ -0.33
VPS54-201ENST00000272322 Q6ZQT7 251 aa12.98□□□□□ -0.33
VPS54-201ENST00000272322 OR8A1Q8NGG7 326 aa12.98□□□□□ -0.33
VPS54-201ENST00000272322 ABCA2Q9BZC7 2435 aa12.98□□□□□ -0.33
VPS54-201ENST00000272322 LOC102724200A0A096LPH7 203 aaPredicted RBP12.98□□□□□ -0.33
VPS54-201ENST00000272322 ZNF80P51504 273 aaPredicted RBP12.97□□□□□ -0.33
VPS54-201ENST00000272322 C11orf71Q6IPW1 123 aa12.97□□□□□ -0.33
VPS54-201ENST00000272322 PIP4P2Q8N4L2 257 aa12.97□□□□□ -0.33
VPS54-201ENST00000272322 TMEM70Q9BUB7 260 aa12.97□□□□□ -0.33
VPS54-201ENST00000272322 TMEM189A5PLL7 270 aa12.97□□□□□ -0.33
VPS54-201ENST00000272322 C2orf70A6NJV1 201 aa12.97□□□□□ -0.33
VPS54-201ENST00000272322 PVRIGQ6DKI7 326 aa12.97□□□□□ -0.33
VPS54-201ENST00000272322 NRGNQ92686 78 aa12.97□□□□□ -0.33
VPS54-201ENST00000272322 THYN1Q9P016 225 aa12.97□□□□□ -0.33
VPS54-201ENST00000272322 DOPEY1Q5JWR5 2465 aa12.97□□□□□ -0.33
VPS54-201ENST00000272322 IGHV3-11P01762 117 aa12.96□□□□□ -0.33
VPS54-201ENST00000272322 IFI27P40305 119 aaPredicted RBP12.96□□□□□ -0.33
VPS54-201ENST00000272322 TWIST1Q15672 202 aa12.96□□□□□ -0.33
VPS54-201ENST00000272322 FBXL19-AS1Q494R0 122 aa12.96□□□□□ -0.33
VPS54-201ENST00000272322 WIPF2Q8TF74 440 aaPredicted RBP12.96□□□□□ -0.33
VPS54-201ENST00000272322 D6R8Y8 96 aa12.96□□□□□ -0.33
VPS54-201ENST00000272322 RPL11P62913 178 aaKnown RBP12.96□□□□□ -0.33
VPS54-201ENST00000272322 Q8N9W7 124 aa12.96□□□□□ -0.33
VPS54-201ENST00000272322 DEFB104AQ8WTQ1 72 aa12.96□□□□□ -0.33
VPS54-201ENST00000272322 NEU4Q8WWR8 484 aaPredicted RBP12.96□□□□□ -0.33
VPS54-201ENST00000272322 ODF3BA8MYP8 253 aa12.96□□□□□ -0.34
VPS54-201ENST00000272322 SH2D1AO60880 128 aa12.96□□□□□ -0.34
VPS54-201ENST00000272322 CCDC144NLQ6NUI1 221 aa12.96□□□□□ -0.34
VPS54-201ENST00000272322 TMEM208Q9BTX3 173 aa12.96□□□□□ -0.34
VPS54-201ENST00000272322 UQCR10Q9UDW1 63 aa12.96□□□□□ -0.34
VPS54-201ENST00000272322 NDUFA3O95167 84 aa12.95□□□□□ -0.34
VPS54-201ENST00000272322 EGR2P11161 476 aaPredicted RBP12.95□□□□□ -0.34
VPS54-201ENST00000272322 RABAC1Q9UI14 185 aa12.95□□□□□ -0.34
VPS54-201ENST00000272322 GAS8-AS1O95177 125 aa12.95□□□□□ -0.34
VPS54-201ENST00000272322 M0R1W7 72 aa12.94□□□□□ -0.34
VPS54-201ENST00000272322 NPBQ8NG41 125 aa12.94□□□□□ -0.34
VPS54-201ENST00000272322 TMEM14CQ9P0S9 112 aa12.94□□□□□ -0.34
VPS54-201ENST00000272322 LAMTOR2Q9Y2Q5 125 aa12.94□□□□□ -0.34
VPS54-201ENST00000272322 ANKRD17O75179 2603 aaKnown RBP12.94□□□□□ -0.34
VPS54-201ENST00000272322 CTRLP40313 264 aa12.94□□□□□ -0.34
VPS54-201ENST00000272322 FA2HQ7L5A8 372 aa12.94□□□□□ -0.34
VPS54-201ENST00000272322 C18orf15Q96N68 181 aa12.94□□□□□ -0.34
VPS54-201ENST00000272322 SMAD5-AS1Q9Y6J3 95 aa12.94□□□□□ -0.34
VPS54-201ENST00000272322 ATP5L2Q7Z4Y8 100 aa12.94□□□□□ -0.34
VPS54-201ENST00000272322 RNF5Q99942 180 aa12.94□□□□□ -0.34
VPS54-201ENST00000272322 EVI2AP22794 236 aa12.93□□□□□ -0.34
VPS54-201ENST00000272322 LBHQ53QV2 105 aaPredicted RBP12.93□□□□□ -0.34
VPS54-201ENST00000272322 UCNP55089 124 aa12.93□□□□□ -0.34
VPS54-201ENST00000272322 WFDC12Q8WWY7 111 aa12.93□□□□□ -0.34
VPS54-201ENST00000272322 C2CD3Q4AC94 2353 aa12.93□□□□□ -0.34
VPS54-201ENST00000272322 TRAV40A0A0B4J280 105 aa12.93□□□□□ -0.34
VPS54-201ENST00000272322 WI2-2373I1.2A0A1W2PRP0 233 aa12.93□□□□□ -0.34
VPS54-201ENST00000272322 MRPS12O15235 138 aaKnown RBP12.93□□□□□ -0.34
VPS54-201ENST00000272322 RIGQ13278 110 aa12.93□□□□□ -0.34
VPS54-201ENST00000272322 AP5S1Q9NUS5 200 aa12.93□□□□□ -0.34
VPS54-201ENST00000272322 ZNF492Q9P255 531 aa12.93□□□□□ -0.34
VPS54-201ENST00000272322 SRD5A1P18405 259 aa12.92□□□□□ -0.34
VPS54-201ENST00000272322 MAPK1IP1LQ8NDC0 245 aa12.92□□□□□ -0.34
VPS54-201ENST00000272322 NOTCH2Q04721 2471 aa12.92□□□□□ -0.34
VPS54-201ENST00000272322 SYS1-DBNDD2H3BUS1 97 aa12.92□□□□□ -0.34
VPS54-201ENST00000272322 RPL7P18124 248 aaKnown RBP12.92□□□□□ -0.34
VPS54-201ENST00000272322 TSPOP30536 169 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms