RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 IGLL5B9A064 214 aa16.41■□□□□ 0.22
LSM4-201ENST00000252816 ZNF253O75346 499 aa16.41■□□□□ 0.22
LSM4-201ENST00000252816 NDUFB4O95168 129 aa16.41■□□□□ 0.22
LSM4-201ENST00000252816 SPART-AS1P0CW21 52 aa16.41■□□□□ 0.22
LSM4-201ENST00000252816 HIST1H1EP10412 219 aaKnown RBP16.41■□□□□ 0.22
LSM4-201ENST00000252816 WFDC1Q9HC57 220 aa16.41■□□□□ 0.22
LSM4-201ENST00000252816 PPP1R14DQ9NXH3 145 aa16.41■□□□□ 0.22
LSM4-201ENST00000252816 DKK2Q9UBU2 259 aa16.41■□□□□ 0.22
LSM4-201ENST00000252816 ZNF705GA8MUZ8 300 aaPredicted RBP16.4■□□□□ 0.22
LSM4-201ENST00000252816 MED28Q9H204 178 aa16.4■□□□□ 0.22
LSM4-201ENST00000252816 KCNIP2Q9NS61 270 aa16.4■□□□□ 0.22
LSM4-201ENST00000252816 FAM222AQ5U5X8 452 aa16.39■□□□□ 0.21
LSM4-201ENST00000252816 OR10J6PQ8NGY7 276 aa16.39■□□□□ 0.21
LSM4-201ENST00000252816 PARD6GQ9BYG4 376 aaPredicted RBP16.39■□□□□ 0.21
LSM4-201ENST00000252816 PLA2G2EQ9NZK7 142 aa16.39■□□□□ 0.21
LSM4-201ENST00000252816 APLNQ9ULZ1 77 aa16.39■□□□□ 0.21
LSM4-201ENST00000252816 YTHDF2Q9Y5A9 579 aaKnown RBP16.39■□□□□ 0.21
LSM4-201ENST00000252816 VPS13DQ5THJ4 4388 aa16.39■□□□□ 0.21
LSM4-201ENST00000252816 KMT2AQ03164 3969 aa16.38■□□□□ 0.21
LSM4-201ENST00000252816 DEFB131BA0A096LNP1 70 aa16.38■□□□□ 0.21
LSM4-201ENST00000252816 C17orf112F2Z3M2 114 aa16.38■□□□□ 0.21
LSM4-201ENST00000252816 M0R3E3 92 aa16.38■□□□□ 0.21
LSM4-201ENST00000252816 CDKN1BP46527 198 aa16.38■□□□□ 0.21
LSM4-201ENST00000252816 KIR3DS1Q14943 382 aa16.38■□□□□ 0.21
LSM4-201ENST00000252816 RPP25LQ8N5L8 163 aaKnown RBP16.38■□□□□ 0.21
LSM4-201ENST00000252816 BLNKQ8WV28 456 aa16.38■□□□□ 0.21
LSM4-201ENST00000252816 IFNA5P01569 189 aa16.37■□□□□ 0.21
LSM4-201ENST00000252816 PDE6HQ13956 83 aa16.37■□□□□ 0.21
LSM4-201ENST00000252816 LGALS9CQ6DKI2 356 aa16.37■□□□□ 0.21
LSM4-201ENST00000252816 SCGB1C1Q8TD33 95 aa16.37■□□□□ 0.21
LSM4-201ENST00000252816 MRPL32Q9BYC8 188 aaKnown RBP16.37■□□□□ 0.21
LSM4-201ENST00000252816 TIMM9Q9Y5J7 89 aa16.37■□□□□ 0.21
LSM4-201ENST00000252816 TCTAP57738 103 aa16.36■□□□□ 0.21
LSM4-201ENST00000252816 FFAR4Q5NUL3 377 aa16.36■□□□□ 0.21
LSM4-201ENST00000252816 EXOC3-AS1Q8N2X6 119 aa16.36■□□□□ 0.21
LSM4-201ENST00000252816 MRPL53Q96EL3 112 aaKnown RBP16.36■□□□□ 0.21
LSM4-201ENST00000252816 FUT9Q9Y231 359 aa16.36■□□□□ 0.21
LSM4-201ENST00000252816 IGHV4-4A0A075B6R2 117 aa16.35■□□□□ 0.21
LSM4-201ENST00000252816 NPIPB6E9PJ23 425 aa16.35■□□□□ 0.21
LSM4-201ENST00000252816 CT45A10P0DMU9 189 aa16.35■□□□□ 0.21
LSM4-201ENST00000252816 AZU1P20160 251 aa16.35■□□□□ 0.21
LSM4-201ENST00000252816 FXYD5Q96DB9 178 aa16.35■□□□□ 0.21
LSM4-201ENST00000252816 LINC01587Q99440 93 aa16.35■□□□□ 0.21
LSM4-201ENST00000252816 NIPSNAP3BQ9BS92 247 aa16.35■□□□□ 0.21
LSM4-201ENST00000252816 OR51M1Q9H341 326 aa16.35■□□□□ 0.21
LSM4-201ENST00000252816 TEX48A0A1B0GUV7 120 aa16.34■□□□□ 0.21
LSM4-201ENST00000252816 Q5BKY6 102 aa16.34■□□□□ 0.21
LSM4-201ENST00000252816 TMEM256Q8N2U0 113 aa16.34■□□□□ 0.21
LSM4-201ENST00000252816 PAXXQ9BUH6 204 aa16.34■□□□□ 0.21
LSM4-201ENST00000252816 PLAC8L1A1L4L8 177 aa16.33■□□□□ 0.2
LSM4-201ENST00000252816 OR10J4P0C629 311 aa16.33■□□□□ 0.2
LSM4-201ENST00000252816 NBEAP1P0C6P0 100 aa16.33■□□□□ 0.2
LSM4-201ENST00000252816 TSPOP30536 169 aa16.33■□□□□ 0.2
LSM4-201ENST00000252816 GFI1BQ5VTD9 330 aa16.33■□□□□ 0.2
LSM4-201ENST00000252816 ZNF503Q96F45 646 aa16.33■□□□□ 0.2
LSM4-201ENST00000252816 PRELID1Q9Y255 219 aa16.33■□□□□ 0.2
LSM4-201ENST00000252816 TAS2R60P59551 318 aa16.32■□□□□ 0.2
LSM4-201ENST00000252816 ERCC8Q13216 396 aa16.32■□□□□ 0.2
LSM4-201ENST00000252816 ICAM4Q14773 271 aa16.32■□□□□ 0.2
LSM4-201ENST00000252816 RNF141Q8WVD5 230 aa16.32■□□□□ 0.2
LSM4-201ENST00000252816 ODF3Q96PU9 254 aa16.32■□□□□ 0.2
LSM4-201ENST00000252816 EIF3GO75821 320 aaKnown RBP eCLIP16.31■□□□□ 0.2
LSM4-201ENST00000252816 GIPP09681 153 aaPredicted RBP16.31■□□□□ 0.2
LSM4-201ENST00000252816 HTN1P15515 57 aa16.31■□□□□ 0.2
LSM4-201ENST00000252816 OXA1LQ15070 435 aa16.31■□□□□ 0.2
LSM4-201ENST00000252816 RGS21Q2M5E4 152 aa16.31■□□□□ 0.2
LSM4-201ENST00000252816 PHYHIPLQ96FC7 376 aa16.31■□□□□ 0.2
LSM4-201ENST00000252816 J3KRW8 73 aa16.3■□□□□ 0.2
LSM4-201ENST00000252816 OR7C2O60412 319 aa16.3■□□□□ 0.2
LSM4-201ENST00000252816 AQP10Q96PS8 301 aa16.3■□□□□ 0.2
LSM4-201ENST00000252816 C20orf144Q9BQM9 153 aa16.3■□□□□ 0.2
LSM4-201ENST00000252816 AGPAT4-IT1Q9H0P7 198 aa16.3■□□□□ 0.2
LSM4-201ENST00000252816 AAMDCQ9H7C9 122 aa16.3■□□□□ 0.2
LSM4-201ENST00000252816 H7BYZ3 331 aa16.29■□□□□ 0.2
LSM4-201ENST00000252816 LEPP41159 167 aa16.29■□□□□ 0.2
LSM4-201ENST00000252816 DAD1P61803 113 aa16.29■□□□□ 0.2
LSM4-201ENST00000252816 FAM122CQ6P4D5 195 aa16.29■□□□□ 0.2
LSM4-201ENST00000252816 IGKV2-40A0A087WW87 121 aaPredicted RBP16.28■□□□□ 0.2
LSM4-201ENST00000252816 IGKV2D-40P01614 121 aaPredicted RBP16.28■□□□□ 0.2
LSM4-201ENST00000252816 LYRM9A8MSI8 78 aa16.27■□□□□ 0.2
LSM4-201ENST00000252816 HTN3P15516 51 aa16.27■□□□□ 0.2
LSM4-201ENST00000252816 UBE2L3P68036 154 aaKnown RBP16.27■□□□□ 0.2
LSM4-201ENST00000252816 RNASE8Q8TDE3 154 aaKnown RBP16.27■□□□□ 0.2
LSM4-201ENST00000252816 ASB13Q8WXK3 278 aa16.27■□□□□ 0.2
LSM4-201ENST00000252816 FAM19A4Q96LR4 140 aa16.27■□□□□ 0.2
LSM4-201ENST00000252816 LINC00477Q96M19 166 aa16.27■□□□□ 0.2
LSM4-201ENST00000252816 TRAV12-3A0A0B4J271 114 aa16.26■□□□□ 0.19
LSM4-201ENST00000252816 M6PRP20645 277 aa16.26■□□□□ 0.19
LSM4-201ENST00000252816 RAB2AP61019 212 aa16.26■□□□□ 0.19
LSM4-201ENST00000252816 RANP62826 216 aaKnown RBP16.26■□□□□ 0.19
LSM4-201ENST00000252816 ACOT6Q3I5F7 207 aaPredicted RBP16.26■□□□□ 0.19
LSM4-201ENST00000252816 KHDC3LQ587J8 217 aa16.26■□□□□ 0.19
LSM4-201ENST00000252816 C9orf47Q6ZRZ4 202 aa16.26■□□□□ 0.19
LSM4-201ENST00000252816 C16orf74Q96GX8 76 aa16.26■□□□□ 0.19
LSM4-201ENST00000252816 VGLL1Q99990 258 aa16.26■□□□□ 0.19
LSM4-201ENST00000252816 NDUFAF3Q9BU61 184 aa16.26■□□□□ 0.19
LSM4-201ENST00000252816 EPPK1P58107 5090 aaKnown RBP16.25■□□□□ 0.19
LSM4-201ENST00000252816 TAS2R45P59539 299 aa16.25■□□□□ 0.19
LSM4-201ENST00000252816 ZNF266Q14584 549 aa16.25■□□□□ 0.19
LSM4-201ENST00000252816 ZNF493Q6ZR52 646 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms