RNA–Protein interactions for RNA: ENST00000244302.8

HIF3A-201, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 1 (best)

Gene HIF3A, Length 2,101 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-201ENST00000244302 WDR73Q6P4I2 378 aa9.92□□□□□ -0.82
HIF3A-201ENST00000244302 GNB1LQ9BYB4 327 aa9.92□□□□□ -0.82
HIF3A-201ENST00000244302 SLC25A39Q9BZJ4 359 aaPredicted RBP9.92□□□□□ -0.82
HIF3A-201ENST00000244302 VWFP04275 2813 aa9.92□□□□□ -0.82
HIF3A-201ENST00000244302 OR7C2O60412 319 aa9.92□□□□□ -0.82
HIF3A-201ENST00000244302 ARL3P36405 182 aa9.92□□□□□ -0.82
HIF3A-201ENST00000244302 NUTF2P61970 127 aaKnown RBP9.92□□□□□ -0.82
HIF3A-201ENST00000244302 C17orf77Q96MU5 243 aa9.92□□□□□ -0.82
HIF3A-201ENST00000244302 TXN2Q99757 166 aa9.92□□□□□ -0.82
HIF3A-201ENST00000244302 ZFAND3Q9H8U3 227 aa9.92□□□□□ -0.82
HIF3A-201ENST00000244302 OSTCQ9NRP0 149 aa9.92□□□□□ -0.82
HIF3A-201ENST00000244302 TRAV30A0A087WSZ9 112 aa9.91□□□□□ -0.82
HIF3A-201ENST00000244302 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.91□□□□□ -0.82
HIF3A-201ENST00000244302 M0R143 59 aa9.91□□□□□ -0.82
HIF3A-201ENST00000244302 PLP1P60201 277 aa9.91□□□□□ -0.82
HIF3A-201ENST00000244302 RNF2Q99496 336 aa9.91□□□□□ -0.82
HIF3A-201ENST00000244302 HIGD1AQ9Y241 93 aa9.91□□□□□ -0.82
HIF3A-201ENST00000244302 V9GYV3 84 aa9.91□□□□□ -0.82
HIF3A-201ENST00000244302 H3BUA1 57 aa9.91□□□□□ -0.82
HIF3A-201ENST00000244302 C8orf88P0DMB2 117 aa9.91□□□□□ -0.82
HIF3A-201ENST00000244302 CD28P10747 220 aa9.91□□□□□ -0.82
HIF3A-201ENST00000244302 CBLN1P23435 193 aa9.91□□□□□ -0.82
HIF3A-201ENST00000244302 GNG4P50150 75 aa9.91□□□□□ -0.82
HIF3A-201ENST00000244302 USMG5Q96IX5 58 aa9.91□□□□□ -0.82
HIF3A-201ENST00000244302 C20orf144Q9BQM9 153 aa9.91□□□□□ -0.82
HIF3A-201ENST00000244302 MRPL32Q9BYC8 188 aaKnown RBP9.91□□□□□ -0.82
HIF3A-201ENST00000244302 ZNF580Q9UK33 172 aa9.91□□□□□ -0.82
HIF3A-201ENST00000244302 A0A1W2PRE2 83 aa9.9□□□□□ -0.82
HIF3A-201ENST00000244302 HELTA6NFD8 242 aa9.9□□□□□ -0.82
HIF3A-201ENST00000244302 BRI3O95415 125 aa9.9□□□□□ -0.82
HIF3A-201ENST00000244302 SLC35B1P78383 322 aa9.9□□□□□ -0.82
HIF3A-201ENST00000244302 TEX43Q6ZNM6 134 aa9.9□□□□□ -0.82
HIF3A-201ENST00000244302 OR1L4Q8NGR5 311 aa9.9□□□□□ -0.82
HIF3A-201ENST00000244302 A0A1W2PRX2 142 aa9.89□□□□□ -0.83
HIF3A-201ENST00000244302 FOXE3Q13461 319 aa9.89□□□□□ -0.83
HIF3A-201ENST00000244302 CENPWQ5EE01 88 aa9.89□□□□□ -0.83
HIF3A-201ENST00000244302 KHDC1LQ5JSQ8 128 aa9.89□□□□□ -0.83
HIF3A-201ENST00000244302 BLNKQ8WV28 456 aa9.89□□□□□ -0.83
HIF3A-201ENST00000244302 TP53TG3Q9ULZ0 132 aa9.89□□□□□ -0.83
HIF3A-201ENST00000244302 IGHV4OR15-8A0A075B7B6 117 aa9.89□□□□□ -0.83
HIF3A-201ENST00000244302 A0A087WW49 117 aa9.89□□□□□ -0.83
HIF3A-201ENST00000244302 ZNF705FA8MVS1 300 aaPredicted RBP9.89□□□□□ -0.83
HIF3A-201ENST00000244302 SNURFLB1AK76 121 aa9.89□□□□□ -0.83
HIF3A-201ENST00000244302 SLC17A3O00476 420 aa9.89□□□□□ -0.83
HIF3A-201ENST00000244302 ISLRO14498 428 aa9.89□□□□□ -0.83
HIF3A-201ENST00000244302 EREGO14944 169 aa9.89□□□□□ -0.83
HIF3A-201ENST00000244302 NUPR1O60356 82 aa9.89□□□□□ -0.83
HIF3A-201ENST00000244302 ZNF705DP0CH99 300 aaPredicted RBP9.89□□□□□ -0.83
HIF3A-201ENST00000244302 ZNF705BP0CI00 300 aaPredicted RBP9.89□□□□□ -0.83
HIF3A-201ENST00000244302 RAB4AP20338 218 aa9.89□□□□□ -0.83
HIF3A-201ENST00000244302 KRTAP10-3P60369 221 aa9.89□□□□□ -0.83
HIF3A-201ENST00000244302 TMEM183BQ1AE95 376 aa9.89□□□□□ -0.83
HIF3A-201ENST00000244302 OR10J3Q5JRS4 329 aa9.89□□□□□ -0.83
HIF3A-201ENST00000244302 MYOZ3Q8TDC0 251 aa9.89□□□□□ -0.83
HIF3A-201ENST00000244302 WIPF2Q8TF74 440 aaPredicted RBP9.89□□□□□ -0.83
HIF3A-201ENST00000244302 FXYD5Q96DB9 178 aa9.89□□□□□ -0.83
HIF3A-201ENST00000244302 NEU1Q99519 415 aa9.89□□□□□ -0.83
HIF3A-201ENST00000244302 PEF1Q9UBV8 284 aaKnown RBP9.89□□□□□ -0.83
HIF3A-201ENST00000244302 A0A0G2JLM5 398 aa9.88□□□□□ -0.83
HIF3A-201ENST00000244302 A0A1B0GUS0 222 aa9.88□□□□□ -0.83
HIF3A-201ENST00000244302 GRIFINA4D1Z8 144 aa9.88□□□□□ -0.83
HIF3A-201ENST00000244302 TCAPO15273 167 aa9.88□□□□□ -0.83
HIF3A-201ENST00000244302 TCF21O43680 179 aa9.88□□□□□ -0.83
HIF3A-201ENST00000244302 SERF1AO75920 110 aa9.88□□□□□ -0.83
HIF3A-201ENST00000244302 ELANEP08246 267 aa9.88□□□□□ -0.83
HIF3A-201ENST00000244302 TM4SF20Q53R12 229 aa9.88□□□□□ -0.83
HIF3A-201ENST00000244302 BAGE3Q86Y29 109 aa9.88□□□□□ -0.83
HIF3A-201ENST00000244302 BAGE2Q86Y30 109 aa9.88□□□□□ -0.83
HIF3A-201ENST00000244302 SHANK2-AS3Q9BTD1 123 aa9.88□□□□□ -0.83
HIF3A-201ENST00000244302 PAXXQ9BUH6 204 aa9.88□□□□□ -0.83
HIF3A-201ENST00000244302 SNHG12Q9BXW3 62 aa9.88□□□□□ -0.83
HIF3A-201ENST00000244302 H3BRN7 92 aa9.88□□□□□ -0.83
HIF3A-201ENST00000244302 GP9P14770 177 aa9.88□□□□□ -0.83
HIF3A-201ENST00000244302 LINC00310P59036 64 aa9.88□□□□□ -0.83
HIF3A-201ENST00000244302 IGFL4Q6B9Z1 124 aa9.88□□□□□ -0.83
HIF3A-201ENST00000244302 Q6ZWC4 215 aa9.88□□□□□ -0.83
HIF3A-201ENST00000244302 HLA-DQA1P01909 254 aa9.87□□□□□ -0.83
HIF3A-201ENST00000244302 CRYBB3P26998 211 aa9.87□□□□□ -0.83
HIF3A-201ENST00000244302 UBE2L3P68036 154 aaKnown RBP9.87□□□□□ -0.83
HIF3A-201ENST00000244302 SCGB2A2Q13296 93 aa9.87□□□□□ -0.83
HIF3A-201ENST00000244302 OR8I2Q8N0Y5 310 aa9.87□□□□□ -0.83
HIF3A-201ENST00000244302 RNF152Q8N8N0 203 aa9.87□□□□□ -0.83
HIF3A-201ENST00000244302 CITED2Q99967 270 aaPredicted RBP9.87□□□□□ -0.83
HIF3A-201ENST00000244302 ZNF586Q9NXT0 402 aa9.87□□□□□ -0.83
HIF3A-201ENST00000244302 SMAD5-AS1Q9Y6J3 95 aa9.87□□□□□ -0.83
HIF3A-201ENST00000244302 GGTLC3B5MD39 225 aa9.86□□□□□ -0.83
HIF3A-201ENST00000244302 MRPS12O15235 138 aaKnown RBP9.86□□□□□ -0.83
HIF3A-201ENST00000244302 RASL11AQ6T310 242 aa9.86□□□□□ -0.83
HIF3A-201ENST00000244302 SAMD10Q9BYL1 202 aa9.86□□□□□ -0.83
HIF3A-201ENST00000244302 SLURP1P55000 103 aa9.86□□□□□ -0.83
HIF3A-201ENST00000244302 SUMO1P63165 101 aaKnown RBP9.86□□□□□ -0.83
HIF3A-201ENST00000244302 C8orf86Q6ZUL3 223 aa9.86□□□□□ -0.83
HIF3A-201ENST00000244302 UBE2E2Q96LR5 201 aa9.86□□□□□ -0.83
HIF3A-201ENST00000244302 IGF2BP2-AS1Q96M15 143 aa9.86□□□□□ -0.83
HIF3A-201ENST00000244302 MIEN1Q9BRT3 115 aa9.86□□□□□ -0.83
HIF3A-201ENST00000244302 RABAC1Q9UI14 185 aa9.86□□□□□ -0.83
HIF3A-201ENST00000244302 RNF114Q9Y508 228 aa9.86□□□□□ -0.83
HIF3A-201ENST00000244302 SORL1Q92673 2214 aa9.86□□□□□ -0.83
HIF3A-201ENST00000244302 SMIM27A0A1W2PRY6 76 aa9.85□□□□□ -0.83
HIF3A-201ENST00000244302 TMEM136Q6ZRR5 245 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms