RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 MORN5Q5VZ52 161 aa14.02□□□□□ -0.16
CLN3-260ENST00000637578 S100A7AQ86SG5 101 aa14.02□□□□□ -0.16
CLN3-260ENST00000637578 PFDN5Q99471 154 aa14.02□□□□□ -0.16
CLN3-260ENST00000637578 C11orf68Q9H3H3 251 aaKnown RBP14.02□□□□□ -0.16
CLN3-260ENST00000637578 CYTL1Q9NRR1 136 aa14.02□□□□□ -0.16
CLN3-260ENST00000637578 BORCS7-ASMTA0A0B4J1R7 106 aa14.01□□□□□ -0.17
CLN3-260ENST00000637578 A0A0D9SG52 128 aa14.01□□□□□ -0.17
CLN3-260ENST00000637578 SOCS3O14543 225 aa14.01□□□□□ -0.17
CLN3-260ENST00000637578 FFAR4Q5NUL3 377 aa14.01□□□□□ -0.17
CLN3-260ENST00000637578 C4BPBP20851 252 aa14□□□□□ -0.17
CLN3-260ENST00000637578 ATP6V0CP27449 155 aa14□□□□□ -0.17
CLN3-260ENST00000637578 CSNK1G2-AS1Q8NCQ2 148 aa14□□□□□ -0.17
CLN3-260ENST00000637578 ARPC5LQ9BPX5 153 aa14□□□□□ -0.17
CLN3-260ENST00000637578 TIMM9Q9Y5J7 89 aa14□□□□□ -0.17
CLN3-260ENST00000637578 H3BMM0 161 aa14□□□□□ -0.17
CLN3-260ENST00000637578 HYLS1Q96M11 299 aa14□□□□□ -0.17
CLN3-260ENST00000637578 SH3BGRL3Q9H299 93 aa14□□□□□ -0.17
CLN3-260ENST00000637578 CXorf65A6NEN9 183 aa13.99□□□□□ -0.17
CLN3-260ENST00000637578 BCL2L11O43521 198 aa13.99□□□□□ -0.17
CLN3-260ENST00000637578 JTBO76095 146 aa13.99□□□□□ -0.17
CLN3-260ENST00000637578 GALR1P47211 349 aa13.99□□□□□ -0.17
CLN3-260ENST00000637578 C17orf77Q96MU5 243 aa13.99□□□□□ -0.17
CLN3-260ENST00000637578 GPR82Q96P67 336 aa13.99□□□□□ -0.17
CLN3-260ENST00000637578 PSMG3Q9BT73 122 aaPredicted RBP13.99□□□□□ -0.17
CLN3-260ENST00000637578 TRAV5A0A0B4J249 113 aa13.98□□□□□ -0.17
CLN3-260ENST00000637578 NUPR2A6NF83 97 aa13.98□□□□□ -0.17
CLN3-260ENST00000637578 ZNF705EA8MWA4 302 aaPredicted RBP13.98□□□□□ -0.17
CLN3-260ENST00000637578 RPL7P18124 248 aaKnown RBP13.98□□□□□ -0.17
CLN3-260ENST00000637578 PSMB3P49720 205 aa13.98□□□□□ -0.17
CLN3-260ENST00000637578 LGALSLQ3ZCW2 172 aaPredicted RBP13.98□□□□□ -0.17
CLN3-260ENST00000637578 ZFP69Q49AA0 526 aa13.98□□□□□ -0.17
CLN3-260ENST00000637578 CEMP1Q6PRD7 247 aaPredicted RBP13.98□□□□□ -0.17
CLN3-260ENST00000637578 TMUB2Q71RG4 321 aa13.98□□□□□ -0.17
CLN3-260ENST00000637578 Q8NAQ8 132 aa13.98□□□□□ -0.17
CLN3-260ENST00000637578 RNF24Q9Y225 148 aa13.98□□□□□ -0.17
CLN3-260ENST00000637578 KANTRA0A1W2PQU2 76 aa13.97□□□□□ -0.17
CLN3-260ENST00000637578 HLA-DRB4P13762 266 aa13.97□□□□□ -0.17
CLN3-260ENST00000637578 ID1P41134 155 aa13.97□□□□□ -0.17
CLN3-260ENST00000637578 PMS2P11Q13670 270 aa13.97□□□□□ -0.17
CLN3-260ENST00000637578 FAM78BQ5VT40 261 aa13.97□□□□□ -0.17
CLN3-260ENST00000637578 SPATA31B1PQ5VZV4 182 aa13.97□□□□□ -0.17
CLN3-260ENST00000637578 OR2G3Q8NGZ4 309 aa13.97□□□□□ -0.17
CLN3-260ENST00000637578 GNPNAT1Q96EK6 184 aaPredicted RBP13.97□□□□□ -0.17
CLN3-260ENST00000637578 HLA-DRB4X5D2U9 266 aa13.97□□□□□ -0.17
CLN3-260ENST00000637578 PLECQ15149 4684 aaKnown RBP13.97□□□□□ -0.17
CLN3-260ENST00000637578 ISLRO14498 428 aa13.96□□□□□ -0.17
CLN3-260ENST00000637578 MRPS12O15235 138 aaKnown RBP13.96□□□□□ -0.17
CLN3-260ENST00000637578 PFDN1O60925 122 aa13.96□□□□□ -0.17
CLN3-260ENST00000637578 SAMD13Q5VXD3 122 aa13.96□□□□□ -0.17
CLN3-260ENST00000637578 CLUHP3Q96NS8 147 aa13.96□□□□□ -0.17
CLN3-260ENST00000637578 HYDINQ4G0P3 5121 aa13.96□□□□□ -0.17
CLN3-260ENST00000637578 RAB2AP61019 212 aa13.96□□□□□ -0.18
CLN3-260ENST00000637578 NUTF2P61970 127 aaKnown RBP13.96□□□□□ -0.18
CLN3-260ENST00000637578 ACOT6Q3I5F7 207 aaPredicted RBP13.96□□□□□ -0.18
CLN3-260ENST00000637578 MIR17HGQ75NE6 70 aa13.96□□□□□ -0.18
CLN3-260ENST00000637578 ZNF471Q9BX82 626 aaPredicted RBP13.96□□□□□ -0.18
CLN3-260ENST00000637578 SAV1Q9H4B6 383 aaPredicted RBP13.96□□□□□ -0.18
CLN3-260ENST00000637578 X6R8D5 127 aa13.96□□□□□ -0.18
CLN3-260ENST00000637578 ALMS1Q8TCU4 4167 aa13.95□□□□□ -0.18
CLN3-260ENST00000637578 M6PRP20645 277 aa13.95□□□□□ -0.18
CLN3-260ENST00000637578 MEOX2P50222 304 aa13.95□□□□□ -0.18
CLN3-260ENST00000637578 GDF5OSQ5U4N7 250 aa13.95□□□□□ -0.18
CLN3-260ENST00000637578 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.95□□□□□ -0.18
CLN3-260ENST00000637578 FOXI2Q6ZQN5 318 aa13.95□□□□□ -0.18
CLN3-260ENST00000637578 BPIFA4PQ86YQ2 179 aa13.95□□□□□ -0.18
CLN3-260ENST00000637578 MRPL32Q9BYC8 188 aaKnown RBP13.95□□□□□ -0.18
CLN3-260ENST00000637578 FUT9Q9Y231 359 aa13.95□□□□□ -0.18
CLN3-260ENST00000637578 MIFP14174 115 aa13.94□□□□□ -0.18
CLN3-260ENST00000637578 SERF2P84101 59 aa13.94□□□□□ -0.18
CLN3-260ENST00000637578 C9orf62Q8N4C0 152 aa13.94□□□□□ -0.18
CLN3-260ENST00000637578 C11orf45Q8TAV5 145 aa13.94□□□□□ -0.18
CLN3-260ENST00000637578 LINC00052Q96N35 136 aa13.94□□□□□ -0.18
CLN3-260ENST00000637578 SLC25A2Q9BXI2 301 aa13.94□□□□□ -0.18
CLN3-260ENST00000637578 C1QTNF4Q9BXJ3 329 aa13.94□□□□□ -0.18
CLN3-260ENST00000637578 CLEC5AQ9NY25 188 aa13.94□□□□□ -0.18
CLN3-260ENST00000637578 DEFB4AO15263 64 aa13.93□□□□□ -0.18
CLN3-260ENST00000637578 SNRPCP09234 159 aaKnown RBP13.93□□□□□ -0.18
CLN3-260ENST00000637578 RBMY1A1P0DJD3 496 aaKnown RBP13.93□□□□□ -0.18
CLN3-260ENST00000637578 RBMY1CP0DJD4 496 aa13.93□□□□□ -0.18
CLN3-260ENST00000637578 DEFB1P60022 68 aa13.93□□□□□ -0.18
CLN3-260ENST00000637578 RBMY1FQ15415 496 aaKnown RBP13.93□□□□□ -0.18
CLN3-260ENST00000637578 OR10G4Q8NGN3 311 aa13.93□□□□□ -0.18
CLN3-260ENST00000637578 OR10G9Q8NGN4 311 aa13.93□□□□□ -0.18
CLN3-260ENST00000637578 OR10G7Q8NGN6 311 aa13.93□□□□□ -0.18
CLN3-260ENST00000637578 PHLDA1Q8WV24 401 aaPredicted RBP13.93□□□□□ -0.18
CLN3-260ENST00000637578 FAM167A-AS1Q96KT0 104 aa13.93□□□□□ -0.18
CLN3-260ENST00000637578 A0A087X0K7 114 aa13.92□□□□□ -0.18
CLN3-260ENST00000637578 IGHV4-28A0A0C4DH34 117 aa13.92□□□□□ -0.18
CLN3-260ENST00000637578 NKX2-5P52952 324 aaPredicted RBP13.92□□□□□ -0.18
CLN3-260ENST00000637578 RHOBP62745 196 aa13.92□□□□□ -0.18
CLN3-260ENST00000637578 HRH4Q9H3N8 390 aa13.92□□□□□ -0.18
CLN3-260ENST00000637578 EIF3GO75821 320 aaKnown RBP eCLIP13.92□□□□□ -0.18
CLN3-260ENST00000637578 IGLC2P0DOY2 106 aa13.92□□□□□ -0.18
CLN3-260ENST00000637578 NANOS2P60321 138 aaKnown RBP13.92□□□□□ -0.18
CLN3-260ENST00000637578 FAM122CQ6P4D5 195 aa13.92□□□□□ -0.18
CLN3-260ENST00000637578 C20orf173Q96LM9 149 aa13.92□□□□□ -0.18
CLN3-260ENST00000637578 TMEM14CQ9P0S9 112 aa13.92□□□□□ -0.18
CLN3-260ENST00000637578 XCL2Q9UBD3 114 aa13.92□□□□□ -0.18
CLN3-260ENST00000637578 KLK5Q9Y337 293 aaPredicted RBP13.92□□□□□ -0.18
CLN3-260ENST00000637578 H3BQ15 152 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms