RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 ZNF705FA8MVS1 300 aaPredicted RBP12.19□□□□□ -0.46
CLN3-251ENST00000636853 AVPP01185 164 aa12.19□□□□□ -0.46
CLN3-251ENST00000636853 ZNF705DP0CH99 300 aaPredicted RBP12.19□□□□□ -0.46
CLN3-251ENST00000636853 ZNF705BP0CI00 300 aaPredicted RBP12.19□□□□□ -0.46
CLN3-251ENST00000636853 IER3P46695 156 aa12.19□□□□□ -0.46
CLN3-251ENST00000636853 ZNF502Q8TBZ5 544 aa12.19□□□□□ -0.46
CLN3-251ENST00000636853 GPR82Q96P67 336 aa12.19□□□□□ -0.46
CLN3-251ENST00000636853 GOLT1AQ6ZVE7 132 aa12.18□□□□□ -0.46
CLN3-251ENST00000636853 FMC1Q96HJ9 113 aa12.18□□□□□ -0.46
CLN3-251ENST00000636853 ZNF414Q96IQ9 312 aa12.18□□□□□ -0.46
CLN3-251ENST00000636853 TXN2Q99757 166 aa12.18□□□□□ -0.46
CLN3-251ENST00000636853 TRBV9A0A0B4J1U6 114 aa12.18□□□□□ -0.46
CLN3-251ENST00000636853 SMIM27A0A1W2PRY6 76 aa12.18□□□□□ -0.46
CLN3-251ENST00000636853 B4DSR2 109 aa12.18□□□□□ -0.46
CLN3-251ENST00000636853 CLEC3BP05452 202 aa12.18□□□□□ -0.46
CLN3-251ENST00000636853 SIGLEC15Q6ZMC9 328 aa12.18□□□□□ -0.46
CLN3-251ENST00000636853 MLST8Q9BVC4 326 aa12.18□□□□□ -0.46
CLN3-251ENST00000636853 LTAP01374 205 aa12.17□□□□□ -0.46
CLN3-251ENST00000636853 DSCR9P59020 149 aa12.17□□□□□ -0.46
CLN3-251ENST00000636853 Q0VG73 95 aa12.17□□□□□ -0.46
CLN3-251ENST00000636853 LINC00322Q6ZN03 302 aaPredicted RBP12.17□□□□□ -0.46
CLN3-251ENST00000636853 ZNF705AQ6ZN79 300 aaPredicted RBP12.17□□□□□ -0.46
CLN3-251ENST00000636853 FAM231DQ6ZW35 169 aa12.17□□□□□ -0.46
CLN3-251ENST00000636853 Q71RC1 249 aaPredicted RBP12.17□□□□□ -0.46
CLN3-251ENST00000636853 MRPL18Q9H0U6 180 aaKnown RBP12.17□□□□□ -0.46
CLN3-251ENST00000636853 EPG5Q9HCE0 2579 aa12.17□□□□□ -0.46
CLN3-251ENST00000636853 SNURFLB1AK76 121 aa12.17□□□□□ -0.46
CLN3-251ENST00000636853 NUPR1O60356 82 aa12.17□□□□□ -0.46
CLN3-251ENST00000636853 SCGB2A1O75556 95 aa12.17□□□□□ -0.46
CLN3-251ENST00000636853 COL8A1P27658 744 aa12.17□□□□□ -0.46
CLN3-251ENST00000636853 S100A7AQ86SG5 101 aa12.17□□□□□ -0.46
CLN3-251ENST00000636853 RNF24Q9Y225 148 aa12.17□□□□□ -0.46
CLN3-251ENST00000636853 UBR5O95071 2799 aaPredicted RBP12.17□□□□□ -0.46
CLN3-251ENST00000636853 LRRK2Q5S007 2527 aa12.17□□□□□ -0.46
CLN3-251ENST00000636853 A0A1B0GUS0 222 aa12.16□□□□□ -0.46
CLN3-251ENST00000636853 H3BUX3 64 aa12.16□□□□□ -0.46
CLN3-251ENST00000636853 KLK9Q2XQG4 91 aa12.16□□□□□ -0.46
CLN3-251ENST00000636853 MRPL54Q6P161 138 aaKnown RBP12.16□□□□□ -0.46
CLN3-251ENST00000636853 CLEC19AQ6UXS0 136 aa12.16□□□□□ -0.46
CLN3-251ENST00000636853 Q6ZWC4 215 aa12.16□□□□□ -0.46
CLN3-251ENST00000636853 MBD6Q96DN6 1003 aa12.16□□□□□ -0.46
CLN3-251ENST00000636853 CCDC140Q96MF4 163 aa12.16□□□□□ -0.46
CLN3-251ENST00000636853 GNB4Q9HAV0 340 aa12.16□□□□□ -0.46
CLN3-251ENST00000636853 RABAC1Q9UI14 185 aa12.16□□□□□ -0.46
CLN3-251ENST00000636853 KLK9Q9UKQ9 250 aa12.16□□□□□ -0.46
CLN3-251ENST00000636853 IGLV2-11P01706 119 aa12.16□□□□□ -0.46
CLN3-251ENST00000636853 TOMM20LQ6UXN7 152 aa12.16□□□□□ -0.46
CLN3-251ENST00000636853 PRNTQ86SH4 94 aa12.16□□□□□ -0.46
CLN3-251ENST00000636853 MAPK1IP1LQ8NDC0 245 aa12.16□□□□□ -0.46
CLN3-251ENST00000636853 ASCL2Q99929 193 aa12.16□□□□□ -0.46
CLN3-251ENST00000636853 TP53TG3Q9ULZ0 132 aa12.16□□□□□ -0.46
CLN3-251ENST00000636853 TRAV41A0A0B4J266 112 aa12.15□□□□□ -0.46
CLN3-251ENST00000636853 M0R3E3 92 aa12.15□□□□□ -0.46
CLN3-251ENST00000636853 Q86TA4 180 aa12.15□□□□□ -0.46
CLN3-251ENST00000636853 SMIM12Q96EX1 92 aa12.15□□□□□ -0.46
CLN3-251ENST00000636853 GRAMD2BQ96HH9 432 aa12.15□□□□□ -0.46
CLN3-251ENST00000636853 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.15□□□□□ -0.477e-9■■□□□ 13.5
CLN3-251ENST00000636853 GRIFINA4D1Z8 144 aa12.14□□□□□ -0.47
CLN3-251ENST00000636853 SLC25A16P16260 332 aa12.14□□□□□ -0.47
CLN3-251ENST00000636853 KRTAP10-9P60411 292 aa12.14□□□□□ -0.47
CLN3-251ENST00000636853 CIARTQ8N365 385 aaPredicted RBP12.14□□□□□ -0.47
CLN3-251ENST00000636853 OR4B1Q8NGF8 309 aa12.14□□□□□ -0.47
CLN3-251ENST00000636853 VAMP8Q9BV40 100 aa12.14□□□□□ -0.47
CLN3-251ENST00000636853 ANKRD17O75179 2603 aaKnown RBP12.14□□□□□ -0.47
CLN3-251ENST00000636853 IZUMO1RA6ND01 250 aa12.14□□□□□ -0.47
CLN3-251ENST00000636853 CRISP2P16562 243 aa12.14□□□□□ -0.47
CLN3-251ENST00000636853 LINC00310P59036 64 aa12.14□□□□□ -0.47
CLN3-251ENST00000636853 COX19Q49B96 90 aa12.14□□□□□ -0.47
CLN3-251ENST00000636853 COL5A1-AS1Q5SY13 56 aa12.14□□□□□ -0.47
CLN3-251ENST00000636853 LYPD1Q8N2G4 141 aa12.14□□□□□ -0.47
CLN3-251ENST00000636853 GNB1LQ9BYB4 327 aa12.14□□□□□ -0.47
CLN3-251ENST00000636853 POLQO75417 2590 aa12.14□□□□□ -0.47
CLN3-251ENST00000636853 BMPR1BO00238 502 aa12.13□□□□□ -0.47
CLN3-251ENST00000636853 C19orf54Q5BKX5 351 aa12.13□□□□□ -0.47
CLN3-251ENST00000636853 EEF1AKMT3Q96AZ1 226 aa12.13□□□□□ -0.47
CLN3-251ENST00000636853 A6NDX4 124 aa12.13□□□□□ -0.47
CLN3-251ENST00000636853 NPSP0C0P6 89 aa12.13□□□□□ -0.47
CLN3-251ENST00000636853 RPL19P84098 196 aaKnown RBP12.13□□□□□ -0.47
CLN3-251ENST00000636853 TMEM136Q6ZRR5 245 aa12.13□□□□□ -0.47
CLN3-251ENST00000636853 NUP35Q8NFH5 326 aa12.13□□□□□ -0.47
CLN3-251ENST00000636853 ZFAND3Q9H8U3 227 aa12.13□□□□□ -0.47
CLN3-251ENST00000636853 NAT8BQ9UHF3 227 aa12.13□□□□□ -0.47
CLN3-251ENST00000636853 SMAD5-AS1Q9Y6J3 95 aa12.13□□□□□ -0.47
CLN3-251ENST00000636853 A0A096LNT2 108 aa12.12□□□□□ -0.47
CLN3-251ENST00000636853 RPL7P18124 248 aaKnown RBP12.12□□□□□ -0.47
CLN3-251ENST00000636853 AAMDCQ9H7C9 122 aa12.12□□□□□ -0.47
CLN3-251ENST00000636853 ZFP30Q9Y2G7 519 aa12.12□□□□□ -0.47
CLN3-251ENST00000636853 CSPG4Q6UVK1 2322 aa12.12□□□□□ -0.47
CLN3-251ENST00000636853 C19orf71A6NCJ1 209 aa12.12□□□□□ -0.47
CLN3-251ENST00000636853 DIRC3C9JPN6 131 aa12.12□□□□□ -0.47
CLN3-251ENST00000636853 BLCAPP62952 87 aa12.12□□□□□ -0.47
CLN3-251ENST00000636853 ATP5G2Q06055 141 aa12.12□□□□□ -0.47
CLN3-251ENST00000636853 PDE6HQ13956 83 aa12.12□□□□□ -0.47
CLN3-251ENST00000636853 Q6ZS46 218 aa12.12□□□□□ -0.47
CLN3-251ENST00000636853 LINC01356Q8N9X3 169 aa12.12□□□□□ -0.47
CLN3-251ENST00000636853 TSKUQ8WUA8 353 aa12.12□□□□□ -0.47
CLN3-251ENST00000636853 CENPEQ02224 2701 aa12.11□□□□□ -0.47
CLN3-251ENST00000636853 TRBV7-1A0A0A6YYK4 115 aa12.11□□□□□ -0.47
CLN3-251ENST00000636853 IGHV3-66A0A0C4DH42 116 aa12.11□□□□□ -0.47
CLN3-251ENST00000636853 HIGD1CA8MV81 97 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms