RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 RNASE2P10153 161 aaKnown RBP7.28□□□□□ -1.24
VCL-206ENST00000623461 SPACA3Q8IXA5 215 aa7.28□□□□□ -1.24
VCL-206ENST00000623461 Q8N8P6 123 aa7.28□□□□□ -1.24
VCL-206ENST00000623461 RNF5Q99942 180 aa7.28□□□□□ -1.24
VCL-206ENST00000623461 IGKV2-40A0A087WW87 121 aaPredicted RBP7.28□□□□□ -1.24
VCL-206ENST00000623461 IGKV2D-40P01614 121 aaPredicted RBP7.28□□□□□ -1.24
VCL-206ENST00000623461 CELA3BP08861 270 aa7.28□□□□□ -1.24
VCL-206ENST00000623461 CD7P09564 240 aa7.28□□□□□ -1.24
VCL-206ENST00000623461 ARMS2P0C7Q2 107 aa7.28□□□□□ -1.24
VCL-206ENST00000623461 INAFM2P0DMQ5 153 aa7.28□□□□□ -1.24
VCL-206ENST00000623461 HIST1H4AP62805 103 aaKnown RBP7.28□□□□□ -1.24
VCL-206ENST00000623461 PDE6HQ13956 83 aa7.28□□□□□ -1.24
VCL-206ENST00000623461 UTF1Q5T230 341 aa7.28□□□□□ -1.24
VCL-206ENST00000623461 CLEC19AQ6UXS0 136 aa7.28□□□□□ -1.24
VCL-206ENST00000623461 NPFFR1Q9GZQ6 430 aa7.28□□□□□ -1.24
VCL-206ENST00000623461 FREM3P0C091 2139 aa7.27□□□□□ -1.24
VCL-206ENST00000623461 FAM201AQ5SY85 155 aa7.27□□□□□ -1.24
VCL-206ENST00000623461 C5orf63A6NC05 138 aa7.27□□□□□ -1.25
VCL-206ENST00000623461 SRRM5B3KS81 715 aa7.27□□□□□ -1.25
VCL-206ENST00000623461 PSPNO60542 156 aa7.27□□□□□ -1.25
VCL-206ENST00000623461 RCHY1Q96PM5 261 aa7.27□□□□□ -1.25
VCL-206ENST00000623461 IGHV3OR16-13A0A075B7E8 117 aa7.27□□□□□ -1.25
VCL-206ENST00000623461 IGHV3-74A0A0B4J1X5 117 aa7.27□□□□□ -1.25
VCL-206ENST00000623461 APOBEC3AP31941 199 aaPredicted RBP7.27□□□□□ -1.25
VCL-206ENST00000623461 ZNF114Q8NC26 417 aa7.27□□□□□ -1.25
VCL-206ENST00000623461 DNAJC30Q96LL9 226 aa7.27□□□□□ -1.25
VCL-206ENST00000623461 TRACP01848 142 aa7.27□□□□□ -1.25
VCL-206ENST00000623461 TRGV11A0A075B6L2 103 aa7.27□□□□□ -1.25
VCL-206ENST00000623461 CELA3AP09093 270 aa7.27□□□□□ -1.25
VCL-206ENST00000623461 DUSP14O95147 198 aaKnown RBP7.27□□□□□ -1.25
VCL-206ENST00000623461 ZNF581Q9P0T4 197 aa7.27□□□□□ -1.25
VCL-206ENST00000623461 C1orf122Q6ZSJ8 110 aa7.26□□□□□ -1.25
VCL-206ENST00000623461 ABHD17AQ96GS6 310 aa7.26□□□□□ -1.25
VCL-206ENST00000623461 LSM4Q9Y4Z0 139 aaKnown RBP7.26□□□□□ -1.25
VCL-206ENST00000623461 PLXNB3Q9ULL4 1909 aa7.26□□□□□ -1.25
VCL-206ENST00000623461 CSRP1P21291 193 aaKnown RBP7.26□□□□□ -1.25
VCL-206ENST00000623461 SRSF8Q9BRL6 282 aaKnown RBP7.26□□□□□ -1.25
VCL-206ENST00000623461 PHF3Q92576 2039 aaKnown RBP7.26□□□□□ -1.25
VCL-206ENST00000623461 TRAV8-3A0A0A6YYJ7 113 aa7.26□□□□□ -1.25
VCL-206ENST00000623461 IGKV1-6A0A0C4DH72 117 aa7.26□□□□□ -1.25
VCL-206ENST00000623461 TMEM141Q96I45 108 aa7.26□□□□□ -1.25
VCL-206ENST00000623461 DUX3Q96PT4 197 aa7.26□□□□□ -1.25
VCL-206ENST00000623461 SDK2Q58EX2 2172 aa7.26□□□□□ -1.25
VCL-206ENST00000623461 C17orf100A8MU93 164 aa7.26□□□□□ -1.25
VCL-206ENST00000623461 CCL3L1P16619 93 aa7.26□□□□□ -1.25
VCL-206ENST00000623461 LINC00479Q96M42 142 aa7.26□□□□□ -1.25
VCL-206ENST00000623461 NCKAP5O14513 1909 aa7.26□□□□□ -1.25
VCL-206ENST00000623461 H3BMG7 143 aa7.26□□□□□ -1.25
VCL-206ENST00000623461 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP7.26□□□□□ -1.25
VCL-206ENST00000623461 CRPP02741 224 aa7.26□□□□□ -1.25
VCL-206ENST00000623461 CACNA1EQ15878 2313 aa7.26□□□□□ -1.25
VCL-206ENST00000623461 IGHV3-49A0A0A0MS15 119 aa7.26□□□□□ -1.25
VCL-206ENST00000623461 TOMM7Q9P0U1 55 aa7.26□□□□□ -1.25
VCL-206ENST00000623461 C12orf74Q32Q52 190 aa7.26□□□□□ -1.25
VCL-206ENST00000623461 DTX1Q86Y01 620 aa7.26□□□□□ -1.25
VCL-206ENST00000623461 ZCCHC24Q8N2G6 241 aaKnown RBP7.26□□□□□ -1.25
VCL-206ENST00000623461 IGKV3OR2-268A0A0C4DH90 116 aa7.25□□□□□ -1.25
VCL-206ENST00000623461 SMKR1H3BMG3 65 aa7.25□□□□□ -1.25
VCL-206ENST00000623461 RASL10AQ92737 203 aa7.25□□□□□ -1.25
VCL-206ENST00000623461 G3V4G9 280 aa7.25□□□□□ -1.25
VCL-206ENST00000623461 C20orf204Q6ZNR8 217 aa7.25□□□□□ -1.25
VCL-206ENST00000623461 TMEM86BQ8N661 226 aa7.25□□□□□ -1.25
VCL-206ENST00000623461 TMEM14BQ9NUH8 114 aa7.25□□□□□ -1.25
VCL-206ENST00000623461 CEP192Q8TEP8 1941 aa7.25□□□□□ -1.25
VCL-206ENST00000623461 PRR31Q5SQ13 230 aa7.25□□□□□ -1.25
VCL-206ENST00000623461 LINC00477Q96M19 166 aa7.25□□□□□ -1.25
VCL-206ENST00000623461 SS18L2Q9UHA2 77 aa7.25□□□□□ -1.25
VCL-206ENST00000623461 IGKV3-20P01619 116 aa7.25□□□□□ -1.25
VCL-206ENST00000623461 IGLC1P0CG04 106 aa7.25□□□□□ -1.25
VCL-206ENST00000623461 GGNQ86UU5 652 aa7.25□□□□□ -1.25
VCL-206ENST00000623461 NEU4Q8WWR8 484 aaPredicted RBP7.25□□□□□ -1.25
VCL-206ENST00000623461 IGHV3-64A0A075B6Q5 118 aa7.25□□□□□ -1.25
VCL-206ENST00000623461 IGHV3OR16-12A0A075B7B8 117 aa7.25□□□□□ -1.25
VCL-206ENST00000623461 H0YJW9 148 aa7.25□□□□□ -1.25
VCL-206ENST00000623461 CFHR2P36980 270 aa7.25□□□□□ -1.25
VCL-206ENST00000623461 C5orf24Q7Z6I8 188 aa7.25□□□□□ -1.25
VCL-206ENST00000623461 HLA-DMBP28068 263 aa7.24□□□□□ -1.25
VCL-206ENST00000623461 GAGE2AQ6NT46 116 aa7.24□□□□□ -1.25
VCL-206ENST00000623461 CFAP161Q6P656 301 aa7.24□□□□□ -1.25
VCL-206ENST00000623461 SIGLEC15Q6ZMC9 328 aa7.24□□□□□ -1.25
VCL-206ENST00000623461 SCRT2Q9NQ03 307 aa7.24□□□□□ -1.25
VCL-206ENST00000623461 PEMTQ9UBM1 199 aa7.24□□□□□ -1.25
VCL-206ENST00000623461 PRO1854Q9UHT4 67 aa7.24□□□□□ -1.25
VCL-206ENST00000623461 OBSL1O75147 1896 aa7.24□□□□□ -1.25
VCL-206ENST00000623461 POU2AF1Q16633 256 aa7.24□□□□□ -1.25
VCL-206ENST00000623461 PRSS57Q6UWY2 283 aa7.24□□□□□ -1.25
VCL-206ENST00000623461 CD177Q8N6Q3 437 aa7.24□□□□□ -1.25
VCL-206ENST00000623461 TMEM126AQ9H061 195 aa7.24□□□□□ -1.25
VCL-206ENST00000623461 ALPK2Q86TB3 2170 aa7.24□□□□□ -1.25
VCL-206ENST00000623461 SHANK2-AS3Q9BTD1 123 aa7.24□□□□□ -1.25
VCL-206ENST00000623461 B5MCH6 92 aa7.24□□□□□ -1.25
VCL-206ENST00000623461 DSCR9P59020 149 aa7.24□□□□□ -1.25
VCL-206ENST00000623461 TIMM21Q9BVV7 248 aa7.24□□□□□ -1.25
VCL-206ENST00000623461 SIGLEC8Q9NYZ4 499 aa7.24□□□□□ -1.25
VCL-206ENST00000623461 PATE3B3GLJ2 98 aa7.24□□□□□ -1.25
VCL-206ENST00000623461 K7EN84 100 aa7.24□□□□□ -1.25
VCL-206ENST00000623461 MRPL51Q4U2R6 128 aaKnown RBP7.24□□□□□ -1.25
VCL-206ENST00000623461 IGKV1-39P01597 117 aa7.24□□□□□ -1.25
VCL-206ENST00000623461 IGKV1D-39P04432 117 aa7.24□□□□□ -1.25
VCL-206ENST00000623461 VWC2Q2TAL6 325 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms