RNA–Protein interactions for RNA: ENST00000622776.1

CPSF1-214, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 1,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-214ENST00000622776 CLINT1Q14677 625 aa16.59■□□□□ 0.25
CPSF1-214ENST00000622776 NOP10Q9NPE3 64 aaKnown RBP16.59■□□□□ 0.25
CPSF1-214ENST00000622776 PMS2P5A8MQ11 134 aa16.58■□□□□ 0.24
CPSF1-214ENST00000622776 NOL3O60936 208 aaKnown RBP16.58■□□□□ 0.24
CPSF1-214ENST00000622776 ZNF493Q6ZR52 646 aa16.58■□□□□ 0.24
CPSF1-214ENST00000622776 SSX7Q7RTT5 188 aa16.58■□□□□ 0.24
CPSF1-214ENST00000622776 S100A7AQ86SG5 101 aa16.58■□□□□ 0.24
CPSF1-214ENST00000622776 MAPKAPK5-AS1Q8N8E1 139 aa16.58■□□□□ 0.24
CPSF1-214ENST00000622776 DEDD2Q8WXF8 326 aa16.58■□□□□ 0.24
CPSF1-214ENST00000622776 RPUSD4Q96CM3 377 aaKnown RBP16.58■□□□□ 0.24
CPSF1-214ENST00000622776 V9GYH0 126 aa16.58■□□□□ 0.24
CPSF1-214ENST00000622776 ADAP1O75689 374 aa16.57■□□□□ 0.24
CPSF1-214ENST00000622776 CDKN1BP46527 198 aa16.57■□□□□ 0.24
CPSF1-214ENST00000622776 RNASE8Q8TDE3 154 aaKnown RBP16.57■□□□□ 0.24
CPSF1-214ENST00000622776 CCNKO75909 580 aa16.56■□□□□ 0.24
CPSF1-214ENST00000622776 UBE2MP61081 183 aaKnown RBP16.56■□□□□ 0.24
CPSF1-214ENST00000622776 RRAS2P62070 204 aaPredicted RBP16.56■□□□□ 0.24
CPSF1-214ENST00000622776 DLK1P80370 383 aa16.56■□□□□ 0.24
CPSF1-214ENST00000622776 PATE2Q6UY27 113 aa16.56■□□□□ 0.24
CPSF1-214ENST00000622776 TMEM263Q8WUH6 116 aaKnown RBP16.56■□□□□ 0.24
CPSF1-214ENST00000622776 ARL6Q9H0F7 186 aa16.56■□□□□ 0.24
CPSF1-214ENST00000622776 APOBP04114 4563 aaKnown RBP16.56■□□□□ 0.24
CPSF1-214ENST00000622776 MRPS12O15235 138 aaKnown RBP16.55■□□□□ 0.24
CPSF1-214ENST00000622776 SSSCA1O60232 199 aa16.55■□□□□ 0.24
CPSF1-214ENST00000622776 ANXA7P20073 488 aaKnown RBP16.55■□□□□ 0.24
CPSF1-214ENST00000622776 SMIM8Q96KF7 97 aa16.55■□□□□ 0.24
CPSF1-214ENST00000622776 ARV1Q9H2C2 271 aa16.55■□□□□ 0.24
CPSF1-214ENST00000622776 Q9H8V8 135 aa16.55■□□□□ 0.24
CPSF1-214ENST00000622776 NPVFQ9HCQ7 196 aa16.55■□□□□ 0.24
CPSF1-214ENST00000622776 DNAH5Q8TE73 4624 aa16.54■□□□□ 0.24
CPSF1-214ENST00000622776 C9orf170A2RU37 121 aa16.54■□□□□ 0.24
CPSF1-214ENST00000622776 H7BYZ3 331 aa16.54■□□□□ 0.24
CPSF1-214ENST00000622776 OR5I1Q13606 314 aa16.54■□□□□ 0.24
CPSF1-214ENST00000622776 OR10J6PQ8NGY7 276 aa16.54■□□□□ 0.24
CPSF1-214ENST00000622776 RNF24Q9Y225 148 aa16.54■□□□□ 0.24
CPSF1-214ENST00000622776 FNDC10F2Z333 226 aa16.53■□□□□ 0.24
CPSF1-214ENST00000622776 K7EPK0 472 aa16.53■□□□□ 0.24
CPSF1-214ENST00000622776 METTL15P1P0C7V9 234 aa16.53■□□□□ 0.24
CPSF1-214ENST00000622776 CXCL2P19875 107 aa16.53■□□□□ 0.24
CPSF1-214ENST00000622776 TMEM14EPQ6UXP3 125 aa16.53■□□□□ 0.24
CPSF1-214ENST00000622776 SPATA12Q7Z6I5 190 aa16.53■□□□□ 0.24
CPSF1-214ENST00000622776 GNPNAT1Q96EK6 184 aaPredicted RBP16.53■□□□□ 0.24
CPSF1-214ENST00000622776 ZNF331Q9NQX6 463 aaPredicted RBP16.53■□□□□ 0.24
CPSF1-214ENST00000622776 TRAV26-1A0A087WT03 109 aa16.52■□□□□ 0.24
CPSF1-214ENST00000622776 SLC38A11Q08AI6 406 aa16.52■□□□□ 0.24
CPSF1-214ENST00000622776 KIR3DS1Q14943 382 aa16.52■□□□□ 0.24
CPSF1-214ENST00000622776 TEPPQ6URK8 271 aa16.52■□□□□ 0.24
CPSF1-214ENST00000622776 LCN15Q6UWW0 184 aa16.52■□□□□ 0.24
CPSF1-214ENST00000622776 C20orf144Q9BQM9 153 aa16.52■□□□□ 0.24
CPSF1-214ENST00000622776 SNRPCP09234 159 aaKnown RBP16.51■□□□□ 0.23
CPSF1-214ENST00000622776 M6PRP20645 277 aa16.51■□□□□ 0.23
CPSF1-214ENST00000622776 TTC32Q5I0X7 151 aa16.51■□□□□ 0.23
CPSF1-214ENST00000622776 LINC00612Q8N6U2 182 aa16.51■□□□□ 0.23
CPSF1-214ENST00000622776 OR10P1Q8NGE3 313 aa16.51■□□□□ 0.23
CPSF1-214ENST00000622776 RXFP4Q8TDU9 374 aa16.51■□□□□ 0.23
CPSF1-214ENST00000622776 ZNF503Q96F45 646 aa16.51■□□□□ 0.23
CPSF1-214ENST00000622776 SLC50A1Q9BRV3 221 aa16.51■□□□□ 0.23
CPSF1-214ENST00000622776 PARD6GQ9BYG4 376 aaPredicted RBP16.51■□□□□ 0.23
CPSF1-214ENST00000622776 KRTAP1-5Q9BYS1 174 aa16.51■□□□□ 0.23
CPSF1-214ENST00000622776 MGAT4CQ9UBM8 478 aa16.51■□□□□ 0.23
CPSF1-214ENST00000622776 ZNF701M0R085 212 aaPredicted RBP16.5■□□□□ 0.23
CPSF1-214ENST00000622776 PXDC1Q5TGL8 231 aa16.5■□□□□ 0.23
CPSF1-214ENST00000622776 LINC00305Q7Z4B0 112 aa16.5■□□□□ 0.23
CPSF1-214ENST00000622776 CCDC28AQ8IWP9 274 aa16.5■□□□□ 0.23
CPSF1-214ENST00000622776 A0A0J9YY99 117 aa16.49■□□□□ 0.23
CPSF1-214ENST00000622776 GOSR2O14653 212 aa16.49■□□□□ 0.23
CPSF1-214ENST00000622776 S100A5P33763 92 aa16.49■□□□□ 0.23
CPSF1-214ENST00000622776 GFI1BQ5VTD9 330 aa16.49■□□□□ 0.23
CPSF1-214ENST00000622776 CCDC190Q86UF4 302 aa16.49■□□□□ 0.23
CPSF1-214ENST00000622776 Q8N1X5 172 aa16.49■□□□□ 0.23
CPSF1-214ENST00000622776 PRAC2D3DTV9 90 aa16.48■□□□□ 0.23
CPSF1-214ENST00000622776 HOXA5P20719 270 aa16.48■□□□□ 0.23
CPSF1-214ENST00000622776 ZNF546Q86UE3 836 aa16.48■□□□□ 0.23
CPSF1-214ENST00000622776 BPIFA4PQ86YQ2 179 aa16.48■□□□□ 0.23
CPSF1-214ENST00000622776 Q9H3A6 140 aa16.48■□□□□ 0.23
CPSF1-214ENST00000622776 GAGE12BA1L429 117 aa16.47■□□□□ 0.23
CPSF1-214ENST00000622776 AGPAT2O15120 278 aa16.47■□□□□ 0.23
CPSF1-214ENST00000622776 GAGE7O76087 117 aa16.47■□□□□ 0.23
CPSF1-214ENST00000622776 NDUFB6O95139 128 aa16.47■□□□□ 0.23
CPSF1-214ENST00000622776 SCGB1D2O95969 90 aa16.47■□□□□ 0.23
CPSF1-214ENST00000622776 GAGE12FP0CL80 117 aa16.47■□□□□ 0.23
CPSF1-214ENST00000622776 GAGE12GP0CL81 117 aa16.47■□□□□ 0.23
CPSF1-214ENST00000622776 GAGE12IP0CL82 117 aa16.47■□□□□ 0.23
CPSF1-214ENST00000622776 TAS2R30P59541 319 aa16.47■□□□□ 0.23
CPSF1-214ENST00000622776 ESRGQ1W209 222 aa16.47■□□□□ 0.23
CPSF1-214ENST00000622776 UPK3BQ9BT76 320 aa16.47■□□□□ 0.23
CPSF1-214ENST00000622776 FLVCR2Q9UPI3 526 aa16.47■□□□□ 0.23
CPSF1-214ENST00000622776 H3BTX0 84 aa16.46■□□□□ 0.23
CPSF1-214ENST00000622776 SLC17A3O00476 420 aa16.46■□□□□ 0.23
CPSF1-214ENST00000622776 TSC22D2O75157 780 aa16.46■□□□□ 0.23
CPSF1-214ENST00000622776 RLN2P04090 185 aa16.46■□□□□ 0.23
CPSF1-214ENST00000622776 OR4E1P0C645 316 aa16.46■□□□□ 0.23
CPSF1-214ENST00000622776 ARL16Q0P5N6 197 aa16.46■□□□□ 0.23
CPSF1-214ENST00000622776 SNURFLB1AK76 121 aa16.45■□□□□ 0.22
CPSF1-214ENST00000622776 COX7A2P2O60397 106 aa16.45■□□□□ 0.22
CPSF1-214ENST00000622776 IAH1Q2TAA2 248 aaPredicted RBP16.45■□□□□ 0.22
CPSF1-214ENST00000622776 ZBTB8BQ8NAP8 495 aaPredicted RBP16.45■□□□□ 0.22
CPSF1-214ENST00000622776 TMEM37Q8WXS4 190 aa16.45■□□□□ 0.22
CPSF1-214ENST00000622776 SCRT2Q9NQ03 307 aa16.45■□□□□ 0.22
CPSF1-214ENST00000622776 A0A1W2PPQ1 181 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms