RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 H3BRN7 92 aa16.66■□□□□ 0.26
LIME1-210ENST00000621325 TMEM219Q86XT9 240 aa16.66■□□□□ 0.26
LIME1-210ENST00000621325 ZNF738Q8NE65 137 aa16.66■□□□□ 0.26
LIME1-210ENST00000621325 SERTAD4Q9NUC0 356 aa16.66■□□□□ 0.26
LIME1-210ENST00000621325 TMEM14CQ9P0S9 112 aa16.66■□□□□ 0.26
LIME1-210ENST00000621325 LRRK2Q5S007 2527 aa16.65■□□□□ 0.26
LIME1-210ENST00000621325 TRAV40A0A0B4J280 105 aa16.65■□□□□ 0.26
LIME1-210ENST00000621325 WI2-2373I1.2A0A1W2PRP0 233 aa16.65■□□□□ 0.26
LIME1-210ENST00000621325 OR2T8A6NH00 312 aa16.65■□□□□ 0.26
LIME1-210ENST00000621325 SPINK4O60575 86 aa16.65■□□□□ 0.26
LIME1-210ENST00000621325 CBLN1P23435 193 aa16.65■□□□□ 0.26
LIME1-210ENST00000621325 EXOC3-AS1Q8N2X6 119 aa16.65■□□□□ 0.26
LIME1-210ENST00000621325 FBXL7Q9UJT9 491 aa16.65■□□□□ 0.26
LIME1-210ENST00000621325 SOX21Q9Y651 276 aaPredicted RBP16.65■□□□□ 0.26
LIME1-210ENST00000621325 PRB4P10163 310 aaPredicted RBP16.65■□□□□ 0.26
LIME1-210ENST00000621325 HIST1H1EP10412 219 aaKnown RBP16.65■□□□□ 0.26
LIME1-210ENST00000621325 FCGR2BP31994 310 aaPredicted RBP16.65■□□□□ 0.26
LIME1-210ENST00000621325 YPEL3P61236 119 aaPredicted RBP16.65■□□□□ 0.26
LIME1-210ENST00000621325 BTF3L4Q96K17 158 aa16.65■□□□□ 0.26
LIME1-210ENST00000621325 LAMTOR2Q9Y2Q5 125 aa16.65■□□□□ 0.26
LIME1-210ENST00000621325 EPG5Q9HCE0 2579 aa16.64■□□□□ 0.25
LIME1-210ENST00000621325 IGHV1-69DA0A0B4J2H0 117 aa16.64■□□□□ 0.25
LIME1-210ENST00000621325 IGHV1-69P01742 117 aa16.64■□□□□ 0.25
LIME1-210ENST00000621325 SLC35B1P78383 322 aa16.64■□□□□ 0.25
LIME1-210ENST00000621325 C5orf17Q8NAS9 161 aa16.64■□□□□ 0.25
LIME1-210ENST00000621325 THYN1Q9P016 225 aa16.64■□□□□ 0.25
LIME1-210ENST00000621325 TRAV30A0A087WSZ9 112 aa16.64■□□□□ 0.25
LIME1-210ENST00000621325 G3V318 75 aa16.64■□□□□ 0.25
LIME1-210ENST00000621325 NDUFS8O00217 210 aa16.64■□□□□ 0.25
LIME1-210ENST00000621325 UBE2G1P62253 170 aa16.64■□□□□ 0.25
LIME1-210ENST00000621325 ERASQ7Z444 233 aa16.64■□□□□ 0.25
LIME1-210ENST00000621325 ZNF48Q96MX3 618 aaPredicted RBP16.64■□□□□ 0.25
LIME1-210ENST00000621325 KLF12Q9Y4X4 402 aa16.64■□□□□ 0.25
LIME1-210ENST00000621325 TCRAP04437 139 aa16.63■□□□□ 0.25
LIME1-210ENST00000621325 IGHV4-38-2P0DP08 117 aa16.63■□□□□ 0.25
LIME1-210ENST00000621325 PRR27Q6MZM9 219 aa16.63■□□□□ 0.25
LIME1-210ENST00000621325 CHRDL1Q9BU40 450 aa16.62■□□□□ 0.25
LIME1-210ENST00000621325 CTSGP08311 255 aa16.62■□□□□ 0.25
LIME1-210ENST00000621325 RIPPLY3P57055 190 aa16.62■□□□□ 0.25
LIME1-210ENST00000621325 TRAV9-1A0A075B6T8 112 aa16.61■□□□□ 0.25
LIME1-210ENST00000621325 HINT1P49773 126 aaPredicted RBP16.61■□□□□ 0.25
LIME1-210ENST00000621325 SRSF1Q07955 248 aaKnown RBP eCLIP16.61■□□□□ 0.253e-6■□□□□ 9.6
LIME1-210ENST00000621325 BPIFA4PQ86YQ2 179 aa16.61■□□□□ 0.25
LIME1-210ENST00000621325 ZNF843Q8N446 348 aa16.61■□□□□ 0.25
LIME1-210ENST00000621325 C5orf56Q8N8D9 126 aa16.61■□□□□ 0.25
LIME1-210ENST00000621325 FAM110DQ8TAY7 271 aaPredicted RBP16.61■□□□□ 0.25
LIME1-210ENST00000621325 PIFOQ8TCI5 191 aa16.61■□□□□ 0.25
LIME1-210ENST00000621325 C7orf69Q9H7B7 122 aa16.61■□□□□ 0.25
LIME1-210ENST00000621325 OTORQ9NRC9 128 aa16.61■□□□□ 0.25
LIME1-210ENST00000621325 IGHV3-35A0A0C4DH35 117 aa16.61■□□□□ 0.25
LIME1-210ENST00000621325 IGLC2P0DOY2 106 aa16.61■□□□□ 0.25
LIME1-210ENST00000621325 ADMP35318 185 aa16.61■□□□□ 0.25
LIME1-210ENST00000621325 IER3P46695 156 aa16.61■□□□□ 0.25
LIME1-210ENST00000621325 OR2D3Q8NGH3 330 aa16.61■□□□□ 0.25
LIME1-210ENST00000621325 TRBV19A0A075B6N1 114 aa16.6■□□□□ 0.25
LIME1-210ENST00000621325 TRAV8-1A0A0A6YYK1 113 aa16.6■□□□□ 0.25
LIME1-210ENST00000621325 MRPS12O15235 138 aaKnown RBP16.6■□□□□ 0.25
LIME1-210ENST00000621325 Q71RC1 249 aaPredicted RBP16.6■□□□□ 0.25
LIME1-210ENST00000621325 POLQO75417 2590 aa16.6■□□□□ 0.25
LIME1-210ENST00000621325 IGHV3OR16-8A0A075B7F1 116 aa16.6■□□□□ 0.25
LIME1-210ENST00000621325 C15orf32Q32M92 178 aa16.6■□□□□ 0.25
LIME1-210ENST00000621325 FBN2P35556 2912 aa16.6■□□□□ 0.25
LIME1-210ENST00000621325 Q6ZN92 141 aa16.59■□□□□ 0.25
LIME1-210ENST00000621325 GPR82Q96P67 336 aa16.59■□□□□ 0.25
LIME1-210ENST00000621325 SMIM27A0A1W2PRY6 76 aa16.59■□□□□ 0.25
LIME1-210ENST00000621325 A1L4Q6 167 aa16.59■□□□□ 0.25
LIME1-210ENST00000621325 AMY1AP04745 511 aa16.59■□□□□ 0.25
LIME1-210ENST00000621325 RHOGP84095 191 aa16.59■□□□□ 0.25
LIME1-210ENST00000621325 LINC00322Q6ZN03 302 aaPredicted RBP16.59■□□□□ 0.25
LIME1-210ENST00000621325 OR4F17Q8NGA8 305 aa16.59■□□□□ 0.25
LIME1-210ENST00000621325 CFAP161Q6P656 301 aa16.58■□□□□ 0.25
LIME1-210ENST00000621325 CMTM2Q8TAZ6 248 aa16.58■□□□□ 0.25
LIME1-210ENST00000621325 MLST8Q9BVC4 326 aa16.58■□□□□ 0.25
LIME1-210ENST00000621325 CENPEQ02224 2701 aa16.58■□□□□ 0.24
LIME1-210ENST00000621325 MSMBP08118 114 aa16.58■□□□□ 0.24
LIME1-210ENST00000621325 GOLT1AQ6ZVE7 132 aa16.58■□□□□ 0.24
LIME1-210ENST00000621325 FAM231DQ6ZW35 169 aa16.58■□□□□ 0.24
LIME1-210ENST00000621325 MBD6Q96DN6 1003 aa16.58■□□□□ 0.24
LIME1-210ENST00000621325 ZNF414Q96IQ9 312 aa16.58■□□□□ 0.24
LIME1-210ENST00000621325 TXN2Q99757 166 aa16.58■□□□□ 0.24
LIME1-210ENST00000621325 MRPL18Q9H0U6 180 aaKnown RBP16.58■□□□□ 0.24
LIME1-210ENST00000621325 LTAP01374 205 aa16.57■□□□□ 0.24
LIME1-210ENST00000621325 GPR183P32249 361 aa16.57■□□□□ 0.24
LIME1-210ENST00000621325 HNRNPA3P51991 378 aaKnown RBP16.57■□□□□ 0.24
LIME1-210ENST00000621325 SIGLEC15Q6ZMC9 328 aa16.57■□□□□ 0.24
LIME1-210ENST00000621325 FMC1Q96HJ9 113 aa16.57■□□□□ 0.24
LIME1-210ENST00000621325 LINC00527Q9UJ94 153 aa16.57■□□□□ 0.24
LIME1-210ENST00000621325 SNURFLB1AK76 121 aa16.57■□□□□ 0.24
LIME1-210ENST00000621325 MRPL54Q6P161 138 aaKnown RBP16.57■□□□□ 0.24
LIME1-210ENST00000621325 ZNF502Q8TBZ5 544 aa16.57■□□□□ 0.24
LIME1-210ENST00000621325 GRIFINA4D1Z8 144 aa16.56■□□□□ 0.24
LIME1-210ENST00000621325 IGLV2-11P01706 119 aa16.56■□□□□ 0.24
LIME1-210ENST00000621325 CTRLP40313 264 aa16.56■□□□□ 0.24
LIME1-210ENST00000621325 VAMP3Q15836 100 aa16.56■□□□□ 0.24
LIME1-210ENST00000621325 SPATA45Q537H7 98 aa16.56■□□□□ 0.24
LIME1-210ENST00000621325 RNF114Q9Y508 228 aa16.56■□□□□ 0.24
LIME1-210ENST00000621325 UBR5O95071 2799 aaPredicted RBP16.56■□□□□ 0.24
LIME1-210ENST00000621325 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.56■□□□□ 0.245e-7■■□□□ 14.4
LIME1-210ENST00000621325 USP9YO00507 2555 aaPredicted RBP16.56■□□□□ 0.24
LIME1-210ENST00000621325 ASCL2Q99929 193 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms