RNA–Protein interactions for RNA: ENST00000618500.4

SNCA-213, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,022 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-213ENST00000618500 NPIPB3Q92617 1050 aa3.03□□□□□ -1.92
SNCA-213ENST00000618500 SLC50A1Q9BRV3 221 aa3.03□□□□□ -1.92
SNCA-213ENST00000618500 RCL1Q9Y2P8 373 aaKnown RBP3.03□□□□□ -1.92
SNCA-213ENST00000618500 COX11Q9Y6N1 276 aa3.03□□□□□ -1.92
SNCA-213ENST00000618500 LRP1Q07954 4544 aaKnown RBP3.03□□□□□ -1.93
SNCA-213ENST00000618500 TRBV7-9A0A0J9YWB2 115 aa3.02□□□□□ -1.93
SNCA-213ENST00000618500 C3orf85A0A1B0GTC6 90 aa3.02□□□□□ -1.93
SNCA-213ENST00000618500 FNDC10F2Z333 226 aa3.02□□□□□ -1.93
SNCA-213ENST00000618500 F6UB75 175 aa3.02□□□□□ -1.93
SNCA-213ENST00000618500 ZNF253O75346 499 aa3.02□□□□□ -1.93
SNCA-213ENST00000618500 CDS2O95674 445 aa3.02□□□□□ -1.93
SNCA-213ENST00000618500 IGKV3-20P01619 116 aa3.02□□□□□ -1.93
SNCA-213ENST00000618500 FCER2P06734 321 aa3.02□□□□□ -1.93
SNCA-213ENST00000618500 GNAO1P09471 354 aa3.02□□□□□ -1.93
SNCA-213ENST00000618500 PTHLHP12272 177 aa3.02□□□□□ -1.93
SNCA-213ENST00000618500 RPL37AP61513 92 aaKnown RBP3.02□□□□□ -1.93
SNCA-213ENST00000618500 POLR2GP62487 172 aaKnown RBP eCLIP3.02□□□□□ -1.93
SNCA-213ENST00000618500 SURF2Q15527 256 aaPredicted RBP3.02□□□□□ -1.93
SNCA-213ENST00000618500 STEAP1BQ6NZ63 245 aa3.02□□□□□ -1.93
SNCA-213ENST00000618500 NEGR1Q7Z3B1 354 aa3.02□□□□□ -1.93
SNCA-213ENST00000618500 OR10G4Q8NGN3 311 aa3.02□□□□□ -1.93
SNCA-213ENST00000618500 TXNL4BQ9NX01 149 aaKnown RBP3.02□□□□□ -1.93
SNCA-213ENST00000618500 HSPB7Q9UBY9 170 aa3.02□□□□□ -1.93
SNCA-213ENST00000618500 M0R2Z0 102 aa3.02□□□□□ -1.93
SNCA-213ENST00000618500 MRPS12O15235 138 aaKnown RBP3.02□□□□□ -1.93
SNCA-213ENST00000618500 SLC25A5P05141 298 aaKnown RBP3.02□□□□□ -1.93
SNCA-213ENST00000618500 ZNF182P17025 639 aaPredicted RBP3.02□□□□□ -1.93
SNCA-213ENST00000618500 OR5I1Q13606 314 aa3.02□□□□□ -1.93
SNCA-213ENST00000618500 TRIM63Q969Q1 353 aa3.02□□□□□ -1.93
SNCA-213ENST00000618500 SLC35E1Q96K37 410 aa3.02□□□□□ -1.93
SNCA-213ENST00000618500 TXNDC17Q9BRA2 123 aa3.02□□□□□ -1.93
SNCA-213ENST00000618500 SHANK2-AS3Q9BTD1 123 aa3.02□□□□□ -1.93
SNCA-213ENST00000618500 TMEM56-RWDD3S4R434 201 aa3.02□□□□□ -1.93
SNCA-213ENST00000618500 DUXBA0A1W2PPF3 345 aa3.01□□□□□ -1.93
SNCA-213ENST00000618500 PRSS46E5RG02 174 aa3.01□□□□□ -1.93
SNCA-213ENST00000618500 CRYGDP07320 174 aa3.01□□□□□ -1.93
SNCA-213ENST00000618500 SLC25A6P12236 298 aa3.01□□□□□ -1.93
SNCA-213ENST00000618500 RPL7P18124 248 aaKnown RBP3.01□□□□□ -1.93
SNCA-213ENST00000618500 KLF9Q13886 244 aaPredicted RBP3.01□□□□□ -1.93
SNCA-213ENST00000618500 FCN2Q15485 313 aa3.01□□□□□ -1.93
SNCA-213ENST00000618500 MLANAQ16655 118 aa3.01□□□□□ -1.93
SNCA-213ENST00000618500 OR8I2Q8N0Y5 310 aa3.01□□□□□ -1.93
SNCA-213ENST00000618500 TP53RKQ96S44 253 aa3.01□□□□□ -1.93
SNCA-213ENST00000618500 TMEM222Q9H0R3 208 aa3.01□□□□□ -1.93
SNCA-213ENST00000618500 SH3BGRL3Q9H299 93 aa3.01□□□□□ -1.93
SNCA-213ENST00000618500 VCXQ9H320 206 aa3.01□□□□□ -1.93
SNCA-213ENST00000618500 A0A0J9YY99 117 aa3.01□□□□□ -1.93
SNCA-213ENST00000618500 RNF222A6NCQ9 220 aa3.01□□□□□ -1.93
SNCA-213ENST00000618500 DEFB1P60022 68 aa3.01□□□□□ -1.93
SNCA-213ENST00000618500 SSBP1Q04837 148 aaKnown RBP3.01□□□□□ -1.93
SNCA-213ENST00000618500 FHL2Q14192 279 aa3.01□□□□□ -1.93
SNCA-213ENST00000618500 BPIFCQ8NFQ6 507 aa3.01□□□□□ -1.93
SNCA-213ENST00000618500 OR10G9Q8NGN4 311 aa3.01□□□□□ -1.93
SNCA-213ENST00000618500 RBPMSQ93062 196 aaKnown RBP3.01□□□□□ -1.93
SNCA-213ENST00000618500 KLF12Q9Y4X4 402 aa3.01□□□□□ -1.93
SNCA-213ENST00000618500 TEX13DA0A0J9YY54 714 aaPredicted RBP3.01□□□□□ -1.93
SNCA-213ENST00000618500 A0A0U1RQV1 116 aa3.01□□□□□ -1.93
SNCA-213ENST00000618500 GAGE12BA1L429 117 aa3.01□□□□□ -1.93
SNCA-213ENST00000618500 SNRPGP15A8MWD9 76 aa3.01□□□□□ -1.93
SNCA-213ENST00000618500 KLLNB2CW77 178 aa3.01□□□□□ -1.93
SNCA-213ENST00000618500 GAGE7O76087 117 aa3.01□□□□□ -1.93
SNCA-213ENST00000618500 PMP2P02689 132 aa3.01□□□□□ -1.93
SNCA-213ENST00000618500 OR5AC1P0C628 307 aa3.01□□□□□ -1.93
SNCA-213ENST00000618500 GAGE12FP0CL80 117 aa3.01□□□□□ -1.93
SNCA-213ENST00000618500 GAGE12GP0CL81 117 aa3.01□□□□□ -1.93
SNCA-213ENST00000618500 GAGE12IP0CL82 117 aa3.01□□□□□ -1.93
SNCA-213ENST00000618500 CRISP2P16562 243 aa3.01□□□□□ -1.93
SNCA-213ENST00000618500 CXCL3P19876 107 aa3.01□□□□□ -1.93
SNCA-213ENST00000618500 CCR6P51684 374 aa3.01□□□□□ -1.93
SNCA-213ENST00000618500 AKR1C2P52895 323 aa3.01□□□□□ -1.93
SNCA-213ENST00000618500 PHLDA2Q53GA4 152 aa3.01□□□□□ -1.93
SNCA-213ENST00000618500 GFI1BQ5VTD9 330 aa3.01□□□□□ -1.93
SNCA-213ENST00000618500 C22orf42Q6IC83 251 aa3.01□□□□□ -1.93
SNCA-213ENST00000618500 LCN15Q6UWW0 184 aa3.01□□□□□ -1.93
SNCA-213ENST00000618500 EIF4E3Q8N5X7 224 aaKnown RBP3.01□□□□□ -1.93
SNCA-213ENST00000618500 ZNF738Q8NE65 137 aa3.01□□□□□ -1.93
SNCA-213ENST00000618500 RNF185Q96GF1 192 aa3.01□□□□□ -1.93
SNCA-213ENST00000618500 UHRF2Q96PU4 802 aa3.01□□□□□ -1.93
SNCA-213ENST00000618500 MRPL32Q9BYC8 188 aaKnown RBP3.01□□□□□ -1.93
SNCA-213ENST00000618500 BLOC1S6Q9UL45 172 aa3.01□□□□□ -1.93
SNCA-213ENST00000618500 PXMP4Q9Y6I8 212 aa3.01□□□□□ -1.93
SNCA-213ENST00000618500 FAT4Q6V0I7 4981 aa3□□□□□ -1.93
SNCA-213ENST00000618500 IGHV1OR15-1A0A075B7D0 117 aa3□□□□□ -1.93
SNCA-213ENST00000618500 A0A0G2JRQ6 117 aa3□□□□□ -1.93
SNCA-213ENST00000618500 K7EQD1 137 aa3□□□□□ -1.93
SNCA-213ENST00000618500 SEC11BP0C7V7 166 aa3□□□□□ -1.93
SNCA-213ENST00000618500 MALP21145 153 aa3□□□□□ -1.93
SNCA-213ENST00000618500 FUSP35637 526 aaKnown RBP eCLIP3□□□□□ -1.93
SNCA-213ENST00000618500 CIRBPQ14011 172 aaKnown RBP3□□□□□ -1.93
SNCA-213ENST00000618500 ZNF846Q147U1 533 aa3□□□□□ -1.93
SNCA-213ENST00000618500 ATRAIDQ6UW56 229 aa3□□□□□ -1.93
SNCA-213ENST00000618500 Q8N976 141 aa3□□□□□ -1.93
SNCA-213ENST00000618500 HSD17B11Q8NBQ5 300 aa3□□□□□ -1.93
SNCA-213ENST00000618500 OR5H6Q8NGV6 325 aa3□□□□□ -1.93
SNCA-213ENST00000618500 PTH2Q96A98 100 aa3□□□□□ -1.93
SNCA-213ENST00000618500 S100A16Q96FQ6 103 aaKnown RBP3□□□□□ -1.93
SNCA-213ENST00000618500 HEYLQ9NQ87 328 aaPredicted RBP3□□□□□ -1.93
SNCA-213ENST00000618500 C9JCJ5 164 aa3□□□□□ -1.93
SNCA-213ENST00000618500 SULT1A3P0DMM9 295 aa3□□□□□ -1.93
SNCA-213ENST00000618500 SULT1A4P0DMN0 295 aa3□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms