RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 CDK2AP2O75956 126 aa17.41■□□□□ 0.38
PTPRF-216ENST00000617451 HTN1P15515 57 aa17.41■□□□□ 0.38
PTPRF-216ENST00000617451 LRRC20Q8TCA0 184 aa17.41■□□□□ 0.38
PTPRF-216ENST00000617451 RNF141Q8WVD5 230 aa17.41■□□□□ 0.38
PTPRF-216ENST00000617451 APOBP04114 4563 aaKnown RBP17.4■□□□□ 0.38
PTPRF-216ENST00000617451 C9orf170A2RU37 121 aa17.4■□□□□ 0.38
PTPRF-216ENST00000617451 PATE2Q6UY27 113 aa17.4■□□□□ 0.38
PTPRF-216ENST00000617451 S100A7AQ86SG5 101 aa17.4■□□□□ 0.38
PTPRF-216ENST00000617451 SMIM8Q96KF7 97 aa17.4■□□□□ 0.38
PTPRF-216ENST00000617451 ARL6Q9H0F7 186 aa17.4■□□□□ 0.38
PTPRF-216ENST00000617451 DNAH5Q8TE73 4624 aa17.4■□□□□ 0.38
PTPRF-216ENST00000617451 K7EPK0 472 aa17.39■□□□□ 0.37
PTPRF-216ENST00000617451 MRPS12O15235 138 aaKnown RBP17.39■□□□□ 0.37
PTPRF-216ENST00000617451 SSSCA1O60232 199 aa17.39■□□□□ 0.37
PTPRF-216ENST00000617451 PRB4P10163 310 aaPredicted RBP17.39■□□□□ 0.37
PTPRF-216ENST00000617451 CDKN1BP46527 198 aa17.39■□□□□ 0.37
PTPRF-216ENST00000617451 DLK1P80370 383 aa17.39■□□□□ 0.37
PTPRF-216ENST00000617451 ZNF493Q6ZR52 646 aa17.39■□□□□ 0.37
PTPRF-216ENST00000617451 RNASE8Q8TDE3 154 aaKnown RBP17.39■□□□□ 0.37
PTPRF-216ENST00000617451 RPUSD4Q96CM3 377 aaKnown RBP17.39■□□□□ 0.37
PTPRF-216ENST00000617451 NPVFQ9HCQ7 196 aa17.39■□□□□ 0.37
PTPRF-216ENST00000617451 CCNKO75909 580 aa17.38■□□□□ 0.37
PTPRF-216ENST00000617451 RRAS2P62070 204 aaPredicted RBP17.38■□□□□ 0.37
PTPRF-216ENST00000617451 NOP10Q9NPE3 64 aaKnown RBP17.38■□□□□ 0.37
PTPRF-216ENST00000617451 FNDC10F2Z333 226 aa17.37■□□□□ 0.37
PTPRF-216ENST00000617451 ANXA7P20073 488 aaKnown RBP17.37■□□□□ 0.37
PTPRF-216ENST00000617451 CLINT1Q14677 625 aa17.37■□□□□ 0.37
PTPRF-216ENST00000617451 TMEM14EPQ6UXP3 125 aa17.37■□□□□ 0.37
PTPRF-216ENST00000617451 SSX7Q7RTT5 188 aa17.37■□□□□ 0.37
PTPRF-216ENST00000617451 TMEM263Q8WUH6 116 aaKnown RBP17.37■□□□□ 0.37
PTPRF-216ENST00000617451 ARV1Q9H2C2 271 aa17.37■□□□□ 0.37
PTPRF-216ENST00000617451 RNF24Q9Y225 148 aa17.37■□□□□ 0.37
PTPRF-216ENST00000617451 METTL15P1P0C7V9 234 aa17.36■□□□□ 0.37
PTPRF-216ENST00000617451 CXCL2P19875 107 aa17.36■□□□□ 0.37
PTPRF-216ENST00000617451 CCDC190Q86UF4 302 aa17.36■□□□□ 0.37
PTPRF-216ENST00000617451 H7BYZ3 331 aa17.35■□□□□ 0.37
PTPRF-216ENST00000617451 S100A5P33763 92 aa17.35■□□□□ 0.37
PTPRF-216ENST00000617451 TEPPQ6URK8 271 aa17.35■□□□□ 0.37
PTPRF-216ENST00000617451 ZNF331Q9NQX6 463 aaPredicted RBP17.35■□□□□ 0.37
PTPRF-216ENST00000617451 SLC38A11Q08AI6 406 aa17.34■□□□□ 0.37
PTPRF-216ENST00000617451 KIR3DS1Q14943 382 aa17.34■□□□□ 0.37
PTPRF-216ENST00000617451 PXDC1Q5TGL8 231 aa17.34■□□□□ 0.37
PTPRF-216ENST00000617451 LCN15Q6UWW0 184 aa17.34■□□□□ 0.37
PTPRF-216ENST00000617451 OR10P1Q8NGE3 313 aa17.34■□□□□ 0.37
PTPRF-216ENST00000617451 OR10J6PQ8NGY7 276 aa17.34■□□□□ 0.37
PTPRF-216ENST00000617451 C20orf144Q9BQM9 153 aa17.34■□□□□ 0.37
PTPRF-216ENST00000617451 Q9H8V8 135 aa17.34■□□□□ 0.37
PTPRF-216ENST00000617451 MGAT4CQ9UBM8 478 aa17.34■□□□□ 0.37
PTPRF-216ENST00000617451 NDUFB6O95139 128 aa17.33■□□□□ 0.36
PTPRF-216ENST00000617451 LINC00305Q7Z4B0 112 aa17.33■□□□□ 0.36
PTPRF-216ENST00000617451 LINC00612Q8N6U2 182 aa17.33■□□□□ 0.36
PTPRF-216ENST00000617451 MAPKAPK5-AS1Q8N8E1 139 aa17.33■□□□□ 0.36
PTPRF-216ENST00000617451 SLC50A1Q9BRV3 221 aa17.33■□□□□ 0.36
PTPRF-216ENST00000617451 SNRPCP09234 159 aaKnown RBP17.32■□□□□ 0.36
PTPRF-216ENST00000617451 OR5I1Q13606 314 aa17.32■□□□□ 0.36
PTPRF-216ENST00000617451 GNPNAT1Q96EK6 184 aaPredicted RBP17.32■□□□□ 0.36
PTPRF-216ENST00000617451 ZNF503Q96F45 646 aa17.32■□□□□ 0.36
PTPRF-216ENST00000617451 FLVCR2Q9UPI3 526 aa17.32■□□□□ 0.36
PTPRF-216ENST00000617451 TRAV26-1A0A087WT03 109 aa17.31■□□□□ 0.36
PTPRF-216ENST00000617451 GOSR2O14653 212 aa17.31■□□□□ 0.36
PTPRF-216ENST00000617451 OR4E1P0C645 316 aa17.31■□□□□ 0.36
PTPRF-216ENST00000617451 M6PRP20645 277 aa17.31■□□□□ 0.36
PTPRF-216ENST00000617451 TAS2R30P59541 319 aa17.31■□□□□ 0.36
PTPRF-216ENST00000617451 ZNF546Q86UE3 836 aa17.31■□□□□ 0.36
PTPRF-216ENST00000617451 RXFP4Q8TDU9 374 aa17.31■□□□□ 0.36
PTPRF-216ENST00000617451 PRAC2D3DTV9 90 aa17.3■□□□□ 0.36
PTPRF-216ENST00000617451 AGPAT2O15120 278 aa17.3■□□□□ 0.36
PTPRF-216ENST00000617451 TSC22D2O75157 780 aa17.3■□□□□ 0.36
PTPRF-216ENST00000617451 ARL16Q0P5N6 197 aa17.3■□□□□ 0.36
PTPRF-216ENST00000617451 GFI1BQ5VTD9 330 aa17.3■□□□□ 0.36
PTPRF-216ENST00000617451 BPIFA4PQ86YQ2 179 aa17.3■□□□□ 0.36
PTPRF-216ENST00000617451 CCDC28AQ8IWP9 274 aa17.3■□□□□ 0.36
PTPRF-216ENST00000617451 PARD6GQ9BYG4 376 aaPredicted RBP17.3■□□□□ 0.36
PTPRF-216ENST00000617451 KRTAP1-5Q9BYS1 174 aa17.3■□□□□ 0.36
PTPRF-216ENST00000617451 SRRQ9GZT4 340 aa17.3■□□□□ 0.36
PTPRF-216ENST00000617451 NAP1L6A6NFF2 107 aa17.29■□□□□ 0.36
PTPRF-216ENST00000617451 ZNF701M0R085 212 aaPredicted RBP17.29■□□□□ 0.36
PTPRF-216ENST00000617451 SCGB1D2O95969 90 aa17.29■□□□□ 0.36
PTPRF-216ENST00000617451 IAH1Q2TAA2 248 aaPredicted RBP17.29■□□□□ 0.36
PTPRF-216ENST00000617451 C4orf46Q504U0 113 aa17.29■□□□□ 0.36
PTPRF-216ENST00000617451 SPATA12Q7Z6I5 190 aa17.29■□□□□ 0.36
PTPRF-216ENST00000617451 GGACTQ9BVM4 153 aa17.29■□□□□ 0.36
PTPRF-216ENST00000617451 SLC17A3O00476 420 aa17.28■□□□□ 0.36
PTPRF-216ENST00000617451 HOXA5P20719 270 aa17.28■□□□□ 0.36
PTPRF-216ENST00000617451 TTC32Q5I0X7 151 aa17.28■□□□□ 0.36
PTPRF-216ENST00000617451 ZBTB8BQ8NAP8 495 aaPredicted RBP17.28■□□□□ 0.36
PTPRF-216ENST00000617451 TMEM37Q8WXS4 190 aa17.28■□□□□ 0.36
PTPRF-216ENST00000617451 Q9H3A6 140 aa17.28■□□□□ 0.36
PTPRF-216ENST00000617451 RCL1Q9Y2P8 373 aaKnown RBP17.28■□□□□ 0.36
PTPRF-216ENST00000617451 A0A0J9YY99 117 aa17.27■□□□□ 0.36
PTPRF-216ENST00000617451 H3BTX0 84 aa17.27■□□□□ 0.36
PTPRF-216ENST00000617451 BAK1Q16611 211 aa17.27■□□□□ 0.36
PTPRF-216ENST00000617451 SPANXN2Q5MJ10 180 aa17.27■□□□□ 0.36
PTPRF-216ENST00000617451 MORN5Q5VZ52 161 aa17.27■□□□□ 0.36
PTPRF-216ENST00000617451 UPK3BQ9BT76 320 aa17.27■□□□□ 0.36
PTPRF-216ENST00000617451 GAGE12BA1L429 117 aa17.26■□□□□ 0.35
PTPRF-216ENST00000617451 COX7A2P2O60397 106 aa17.26■□□□□ 0.35
PTPRF-216ENST00000617451 GAGE7O76087 117 aa17.26■□□□□ 0.35
PTPRF-216ENST00000617451 RLN2P04090 185 aa17.26■□□□□ 0.35
PTPRF-216ENST00000617451 GAGE12FP0CL80 117 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms