RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 ACTRT1Q8TDG2 376 aa2.85□□□□□ -1.95
LINC00540-201ENST00000611481 CYGBQ8WWM9 190 aa2.85□□□□□ -1.95
LINC00540-201ENST00000611481 PYDC1Q8WXC3 89 aa2.85□□□□□ -1.95
LINC00540-201ENST00000611481 SLAMF6Q96DU3 332 aa2.85□□□□□ -1.95
LINC00540-201ENST00000611481 MRPL48Q96GC5 212 aaKnown RBP2.85□□□□□ -1.95
LINC00540-201ENST00000611481 PECRQ9BY49 303 aa2.85□□□□□ -1.95
LINC00540-201ENST00000611481 OR51E2Q9H255 320 aa2.85□□□□□ -1.95
LINC00540-201ENST00000611481 IDI2-AS1Q9NZ38 188 aa2.85□□□□□ -1.95
LINC00540-201ENST00000611481 PSG8Q9UQ74 426 aa2.85□□□□□ -1.95
LINC00540-201ENST00000611481 FUOMA2VDF0 154 aa2.84□□□□□ -1.95
LINC00540-201ENST00000611481 PGPA6NDG6 321 aa2.84□□□□□ -1.95
LINC00540-201ENST00000611481 H3BUA1 57 aa2.84□□□□□ -1.95
LINC00540-201ENST00000611481 SPAG7O75391 227 aa2.84□□□□□ -1.95
LINC00540-201ENST00000611481 LINC00614P0C842 121 aa2.84□□□□□ -1.95
LINC00540-201ENST00000611481 IL3RAP26951 378 aa2.84□□□□□ -1.95
LINC00540-201ENST00000611481 SLC18A1P54219 525 aa2.84□□□□□ -1.95
LINC00540-201ENST00000611481 TAS2R43P59537 309 aa2.84□□□□□ -1.95
LINC00540-201ENST00000611481 PMVKQ15126 192 aa2.84□□□□□ -1.95
LINC00540-201ENST00000611481 TIMM50Q3ZCQ8 353 aa2.84□□□□□ -1.95
LINC00540-201ENST00000611481 C6orf99Q4VX62 202 aa2.84□□□□□ -1.95
LINC00540-201ENST00000611481 ORMDL2Q53FV1 153 aa2.84□□□□□ -1.95
LINC00540-201ENST00000611481 TMEM97Q5BJF2 176 aa2.84□□□□□ -1.95
LINC00540-201ENST00000611481 YIF1BQ5BJH7 314 aa2.84□□□□□ -1.95
LINC00540-201ENST00000611481 CGB2Q6NT52 195 aa2.84□□□□□ -1.95
LINC00540-201ENST00000611481 TMEM179BQ7Z7N9 219 aa2.84□□□□□ -1.95
LINC00540-201ENST00000611481 SLC25A42Q86VD7 318 aa2.84□□□□□ -1.95
LINC00540-201ENST00000611481 Q8N377 158 aa2.84□□□□□ -1.95
LINC00540-201ENST00000611481 LINC00612Q8N6U2 182 aa2.84□□□□□ -1.95
LINC00540-201ENST00000611481 SRSF12Q8WXF0 261 aaKnown RBP2.84□□□□□ -1.95
LINC00540-201ENST00000611481 MARC2Q969Z3 335 aa2.84□□□□□ -1.95
LINC00540-201ENST00000611481 TAMM41Q96BW9 452 aa2.84□□□□□ -1.95
LINC00540-201ENST00000611481 PHB2Q99623 299 aa2.84□□□□□ -1.95
LINC00540-201ENST00000611481 TMEM243Q9BU79 118 aa2.84□□□□□ -1.95
LINC00540-201ENST00000611481 PAXXQ9BUH6 204 aa2.84□□□□□ -1.95
LINC00540-201ENST00000611481 MROQ9BYG7 248 aa2.84□□□□□ -1.95
LINC00540-201ENST00000611481 CHST5Q9GZS9 411 aa2.84□□□□□ -1.95
LINC00540-201ENST00000611481 TGIF2-C20orf24A0A0A6YYL0 155 aa2.83□□□□□ -1.96
LINC00540-201ENST00000611481 OR4C46A6NHA9 309 aa2.83□□□□□ -1.96
LINC00540-201ENST00000611481 ZNF878C9JN71 531 aa2.83□□□□□ -1.96
LINC00540-201ENST00000611481 PHBP35232 272 aa2.83□□□□□ -1.96
LINC00540-201ENST00000611481 POLR2IP36954 125 aaKnown RBP2.83□□□□□ -1.96
LINC00540-201ENST00000611481 MAP2K4P45985 399 aa2.83□□□□□ -1.96
LINC00540-201ENST00000611481 EMP1P54849 157 aa2.83□□□□□ -1.96
LINC00540-201ENST00000611481 RAB4BP61018 213 aa2.83□□□□□ -1.96
LINC00540-201ENST00000611481 RAB5BP61020 215 aa2.83□□□□□ -1.96
LINC00540-201ENST00000611481 GRB2P62993 217 aaKnown RBP2.83□□□□□ -1.96
LINC00540-201ENST00000611481 Q499Y3 187 aa2.83□□□□□ -1.96
LINC00540-201ENST00000611481 TMEM69Q5SWH9 247 aa2.83□□□□□ -1.96
LINC00540-201ENST00000611481 ZNF684Q5T5D7 378 aa2.83□□□□□ -1.96
LINC00540-201ENST00000611481 TRIQKQ629K1 86 aa2.83□□□□□ -1.96
LINC00540-201ENST00000611481 MORN3Q6PF18 240 aaPredicted RBP2.83□□□□□ -1.96
LINC00540-201ENST00000611481 SLC51BQ86UW2 128 aa2.83□□□□□ -1.96
LINC00540-201ENST00000611481 SLC35G3Q8N808 338 aa2.83□□□□□ -1.96
LINC00540-201ENST00000611481 NPBQ8NG41 125 aa2.83□□□□□ -1.96
LINC00540-201ENST00000611481 GRPEL2Q8TAA5 225 aa2.83□□□□□ -1.96
LINC00540-201ENST00000611481 FMC1Q96HJ9 113 aa2.83□□□□□ -1.96
LINC00540-201ENST00000611481 USMG5Q96IX5 58 aa2.83□□□□□ -1.96
LINC00540-201ENST00000611481 NMNAT3Q96T66 252 aa2.83□□□□□ -1.96
LINC00540-201ENST00000611481 SLC25A31Q9H0C2 315 aa2.83□□□□□ -1.96
LINC00540-201ENST00000611481 IER3IP1Q9Y5U9 82 aa2.83□□□□□ -1.96
LINC00540-201ENST00000611481 IGKV1-27A0A075B6S5 117 aa2.82□□□□□ -1.96
LINC00540-201ENST00000611481 TEX50A0A1B0GTY4 177 aa2.82□□□□□ -1.96
LINC00540-201ENST00000611481 A0A1B0GV72 72 aa2.82□□□□□ -1.96
LINC00540-201ENST00000611481 PQLC2LA1A4F0 135 aa2.82□□□□□ -1.96
LINC00540-201ENST00000611481 DNASE2O00115 360 aaPredicted RBP2.82□□□□□ -1.96
LINC00540-201ENST00000611481 PLIN3O60664 434 aa2.82□□□□□ -1.96
LINC00540-201ENST00000611481 CCDC22O60826 627 aa2.82□□□□□ -1.96
LINC00540-201ENST00000611481 GGCTO75223 188 aaKnown RBP2.82□□□□□ -1.96
LINC00540-201ENST00000611481 DHRS3O75911 302 aa2.82□□□□□ -1.96
LINC00540-201ENST00000611481 NDUFA3O95167 84 aa2.82□□□□□ -1.96
LINC00540-201ENST00000611481 OR2H2O95918 312 aa2.82□□□□□ -1.96
LINC00540-201ENST00000611481 CA2P00918 260 aa2.82□□□□□ -1.96
LINC00540-201ENST00000611481 NRASP01111 189 aa2.82□□□□□ -1.96
LINC00540-201ENST00000611481 GIG44P09565 113 aaPredicted RBP2.82□□□□□ -1.96
LINC00540-201ENST00000611481 SPART-AS1P0CW21 52 aa2.82□□□□□ -1.96
LINC00540-201ENST00000611481 CGB3P0DN86 165 aa2.82□□□□□ -1.96
LINC00540-201ENST00000611481 CGB7P0DN87 165 aa2.82□□□□□ -1.96
LINC00540-201ENST00000611481 CD36P16671 472 aa2.82□□□□□ -1.96
LINC00540-201ENST00000611481 H2BFSP57053 126 aa2.82□□□□□ -1.96
LINC00540-201ENST00000611481 SPCS3P61009 180 aa2.82□□□□□ -1.96
LINC00540-201ENST00000611481 RPL23P62829 140 aaKnown RBP2.82□□□□□ -1.96
LINC00540-201ENST00000611481 HES5Q5TA89 166 aa2.82□□□□□ -1.96
LINC00540-201ENST00000611481 RSBN1Q5VWQ0 802 aaPredicted RBP2.82□□□□□ -1.96
LINC00540-201ENST00000611481 SCGB1D4Q6XE38 83 aa2.82□□□□□ -1.96
LINC00540-201ENST00000611481 GTSF1Q8WW33 167 aa2.82□□□□□ -1.96
LINC00540-201ENST00000611481 DYDC1Q8WWB3 177 aa2.82□□□□□ -1.96
LINC00540-201ENST00000611481 LZICQ8WZA0 190 aa2.82□□□□□ -1.96
LINC00540-201ENST00000611481 BTF3L4Q96K17 158 aa2.82□□□□□ -1.96
LINC00540-201ENST00000611481 HOPXQ9BPY8 73 aaPredicted RBP2.82□□□□□ -1.96
LINC00540-201ENST00000611481 TMEM109Q9BVC6 243 aa2.82□□□□□ -1.96
LINC00540-201ENST00000611481 MRPL20Q9BYC9 149 aaKnown RBP2.82□□□□□ -1.96
LINC00540-201ENST00000611481 SAMD10Q9BYL1 202 aa2.82□□□□□ -1.96
LINC00540-201ENST00000611481 PBOV1Q9GZY1 135 aa2.82□□□□□ -1.96
LINC00540-201ENST00000611481 COA4Q9NYJ1 87 aa2.82□□□□□ -1.96
LINC00540-201ENST00000611481 SMPXQ9UHP9 88 aa2.82□□□□□ -1.96
LINC00540-201ENST00000611481 ZNF230Q9UIE0 474 aaPredicted RBP2.82□□□□□ -1.96
LINC00540-201ENST00000611481 ENPP4Q9Y6X5 453 aa2.82□□□□□ -1.96
LINC00540-201ENST00000611481 SYNE2Q8WXH0 6885 aaKnown RBP2.82□□□□□ -1.96
LINC00540-201ENST00000611481 MEIKINA0A087WXM9 373 aa2.81□□□□□ -1.96
LINC00540-201ENST00000611481 IGHV6-1A0A0B4J1U7 121 aa2.81□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms