RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 DCANP1Q8TF63 244 aa10.77□□□□□ -0.69
UPF1-211ENST00000600868 ZNF586Q9NXT0 402 aa10.77□□□□□ -0.69
UPF1-211ENST00000600868 UBQLN2Q9UHD9 624 aa10.77□□□□□ -0.69
UPF1-211ENST00000600868 TRBV19A0A075B6N1 114 aa10.76□□□□□ -0.69
UPF1-211ENST00000600868 K7EQG2 157 aa10.76□□□□□ -0.69
UPF1-211ENST00000600868 DNASE2O00115 360 aaPredicted RBP10.76□□□□□ -0.69
UPF1-211ENST00000600868 ZNF253O75346 499 aa10.76□□□□□ -0.69
UPF1-211ENST00000600868 OR10J4P0C629 311 aa10.76□□□□□ -0.69
UPF1-211ENST00000600868 FGF8P55075 233 aaPredicted RBP10.76□□□□□ -0.69
UPF1-211ENST00000600868 IFITM2Q01629 132 aa10.76□□□□□ -0.69
UPF1-211ENST00000600868 PDE6HQ13956 83 aa10.76□□□□□ -0.69
UPF1-211ENST00000600868 SAMD5Q5TGI4 173 aa10.76□□□□□ -0.69
UPF1-211ENST00000600868 TMEM167BQ9NRX6 74 aa10.76□□□□□ -0.69
UPF1-211ENST00000600868 ZNF256Q9Y2P7 627 aaPredicted RBP10.76□□□□□ -0.69
UPF1-211ENST00000600868 OR4C46A6NHA9 309 aa10.75□□□□□ -0.69
UPF1-211ENST00000600868 TEX46H3BTG2 121 aa10.75□□□□□ -0.69
UPF1-211ENST00000600868 SOCS3O14543 225 aa10.75□□□□□ -0.69
UPF1-211ENST00000600868 HBE1P02100 147 aa10.75□□□□□ -0.69
UPF1-211ENST00000600868 EGFEM1PQ0D2K5 195 aa10.75□□□□□ -0.69
UPF1-211ENST00000600868 GUCA2BQ16661 112 aa10.75□□□□□ -0.69
UPF1-211ENST00000600868 BEAN1Q3B7T3 259 aa10.75□□□□□ -0.69
UPF1-211ENST00000600868 ZNF767PQ75MW2 155 aa10.75□□□□□ -0.69
UPF1-211ENST00000600868 SLC50A1Q9BRV3 221 aa10.75□□□□□ -0.69
UPF1-211ENST00000600868 ZMAT5Q9UDW3 170 aaKnown RBP10.75□□□□□ -0.69
UPF1-211ENST00000600868 CMYA5Q8N3K9 4069 aa10.74□□□□□ -0.69
UPF1-211ENST00000600868 H3BTX0 84 aa10.74□□□□□ -0.69
UPF1-211ENST00000600868 ISLRO14498 428 aa10.74□□□□□ -0.69
UPF1-211ENST00000600868 NDUFB4O95168 129 aa10.74□□□□□ -0.69
UPF1-211ENST00000600868 SNRPCP09234 159 aaKnown RBP10.74□□□□□ -0.69
UPF1-211ENST00000600868 TFPI2P48307 235 aa10.74□□□□□ -0.69
UPF1-211ENST00000600868 PSMB3P49720 205 aa10.74□□□□□ -0.69
UPF1-211ENST00000600868 WFDC3Q8IUB2 231 aa10.74□□□□□ -0.69
UPF1-211ENST00000600868 LYPD6BQ8NI32 183 aa10.74□□□□□ -0.69
UPF1-211ENST00000600868 BLNKQ8WV28 456 aa10.74□□□□□ -0.69
UPF1-211ENST00000600868 TMPRSS5Q9H3S3 457 aa10.74□□□□□ -0.69
UPF1-211ENST00000600868 ZNF331Q9NQX6 463 aaPredicted RBP10.74□□□□□ -0.69
UPF1-211ENST00000600868 TRAV8-2A0A0B4J237 113 aa10.73□□□□□ -0.69
UPF1-211ENST00000600868 G3V4G9 280 aa10.73□□□□□ -0.69
UPF1-211ENST00000600868 SLC17A3O00476 420 aa10.73□□□□□ -0.69
UPF1-211ENST00000600868 ID1P41134 155 aa10.73□□□□□ -0.69
UPF1-211ENST00000600868 PSG9Q00887 426 aa10.73□□□□□ -0.69
UPF1-211ENST00000600868 IQCF2Q8IXL9 164 aa10.73□□□□□ -0.69
UPF1-211ENST00000600868 LYPD1Q8N2G4 141 aa10.73□□□□□ -0.69
UPF1-211ENST00000600868 C16orf92Q96LL3 132 aa10.73□□□□□ -0.69
UPF1-211ENST00000600868 CLEC5AQ9NY25 188 aa10.73□□□□□ -0.69
UPF1-211ENST00000600868 PPT1P50897 306 aa10.72□□□□□ -0.69
UPF1-211ENST00000600868 CMC4P56277 68 aaPredicted RBP10.72□□□□□ -0.69
UPF1-211ENST00000600868 SNRPD3P62318 126 aaKnown RBP10.72□□□□□ -0.69
UPF1-211ENST00000600868 FAM110AQ9BQ89 295 aa10.72□□□□□ -0.69
UPF1-211ENST00000600868 A0A1B0GV50 99 aa10.71□□□□□ -0.69
UPF1-211ENST00000600868 NMBP08949 121 aa10.71□□□□□ -0.69
UPF1-211ENST00000600868 RANP62826 216 aaKnown RBP10.71□□□□□ -0.69
UPF1-211ENST00000600868 CCL20P78556 96 aa10.71□□□□□ -0.69
UPF1-211ENST00000600868 PMS2P11Q13670 270 aa10.71□□□□□ -0.69
UPF1-211ENST00000600868 FAM24BQ8N5W8 94 aa10.71□□□□□ -0.69
UPF1-211ENST00000600868 ARL2-SNX15V9GYD0 113 aa10.71□□□□□ -0.69
UPF1-211ENST00000600868 SORL1Q92673 2214 aa10.7□□□□□ -0.7
UPF1-211ENST00000600868 A0A1W2PRE2 83 aa10.7□□□□□ -0.7
UPF1-211ENST00000600868 RGS13O14921 159 aa10.7□□□□□ -0.7
UPF1-211ENST00000600868 ZNF688P0C7X2 276 aa10.7□□□□□ -0.7
UPF1-211ENST00000600868 KRTAP10-11P60412 298 aa10.7□□□□□ -0.7
UPF1-211ENST00000600868 KPRPQ5T749 579 aaPredicted RBP10.7□□□□□ -0.7
UPF1-211ENST00000600868 MRPL53Q96EL3 112 aaKnown RBP10.7□□□□□ -0.7
UPF1-211ENST00000600868 C20orf173Q96LM9 149 aa10.7□□□□□ -0.7
UPF1-211ENST00000600868 NKX6-2Q9C056 277 aaPredicted RBP10.7□□□□□ -0.7
UPF1-211ENST00000600868 Q9H3A6 140 aa10.7□□□□□ -0.7
UPF1-211ENST00000600868 AAMDCQ9H7C9 122 aa10.7□□□□□ -0.7
UPF1-211ENST00000600868 OTORQ9NRC9 128 aa10.7□□□□□ -0.7
UPF1-211ENST00000600868 PRELID1Q9Y255 219 aa10.7□□□□□ -0.7
UPF1-211ENST00000600868 FAM74A7A6NL05 159 aa10.69□□□□□ -0.7
UPF1-211ENST00000600868 CD7P09564 240 aa10.69□□□□□ -0.7
UPF1-211ENST00000600868 CD81P60033 236 aa10.69□□□□□ -0.7
UPF1-211ENST00000600868 RAB14P61106 215 aa10.69□□□□□ -0.7
UPF1-211ENST00000600868 PSG3Q16557 428 aa10.69□□□□□ -0.7
UPF1-211ENST00000600868 ODF3L2Q3SX64 289 aa10.69□□□□□ -0.7
UPF1-211ENST00000600868 IGFL4Q6B9Z1 124 aa10.69□□□□□ -0.7
UPF1-211ENST00000600868 GTSCR1Q86UQ5 136 aa10.69□□□□□ -0.7
UPF1-211ENST00000600868 EXOC3-AS1Q8N2X6 119 aa10.69□□□□□ -0.7
UPF1-211ENST00000600868 PCNPQ8WW12 178 aaKnown RBP10.69□□□□□ -0.7
UPF1-211ENST00000600868 LINC00052Q96N35 136 aa10.69□□□□□ -0.7
UPF1-211ENST00000600868 MAP6D1Q9H9H5 199 aa10.69□□□□□ -0.7
UPF1-211ENST00000600868 MANBALQ9NQG1 85 aa10.69□□□□□ -0.7
UPF1-211ENST00000600868 C19orf73Q9NVV2 129 aa10.69□□□□□ -0.7
UPF1-211ENST00000600868 YTHDF2Q9Y5A9 579 aaKnown RBP10.69□□□□□ -0.7
UPF1-211ENST00000600868 MGAM2Q2M2H8 2515 aa10.69□□□□□ -0.7
UPF1-211ENST00000600868 PGPA6NDG6 321 aa10.68□□□□□ -0.7
UPF1-211ENST00000600868 OR11H12B2RN74 326 aa10.68□□□□□ -0.7
UPF1-211ENST00000600868 HLA-DMBP28068 263 aa10.68□□□□□ -0.7
UPF1-211ENST00000600868 DEFB131AP59861 70 aa10.68□□□□□ -0.7
UPF1-211ENST00000600868 UBE2G2P60604 165 aa10.68□□□□□ -0.7
UPF1-211ENST00000600868 ICAM4Q14773 271 aa10.68□□□□□ -0.7
UPF1-211ENST00000600868 PSMG4Q5JS54 123 aa10.68□□□□□ -0.7
UPF1-211ENST00000600868 CLLU1Q5K131 121 aa10.68□□□□□ -0.7
UPF1-211ENST00000600868 RNF182Q8N6D2 247 aa10.68□□□□□ -0.7
UPF1-211ENST00000600868 ARL6IP6Q8N6S5 226 aa10.68□□□□□ -0.7
UPF1-211ENST00000600868 GNG13Q9P2W3 67 aa10.68□□□□□ -0.7
UPF1-211ENST00000600868 PAGE4O60829 102 aa10.67□□□□□ -0.7
UPF1-211ENST00000600868 IFNA1P01562 189 aa10.67□□□□□ -0.7
UPF1-211ENST00000600868 TAGLN2P37802 199 aaKnown RBP10.67□□□□□ -0.7
UPF1-211ENST00000600868 SUMO1P63165 101 aaKnown RBP10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms