RNA–Protein interactions for RNA: ENST00000599144.5

IRF3-222, Transcript of interferon regulatory factor 3, human

TSL 1 (best) BASIC

Gene IRF3, Length 1,117 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
IRF3-222	ENST00000599144	DUXB	A0A1W2PPF3	345 aa		13.31	□□□□□ -0.28
IRF3-222	ENST00000599144		H3BTX0	84 aa		13.31	□□□□□ -0.28
IRF3-222	ENST00000599144	MED6	O75586	246 aa		13.31	□□□□□ -0.28
IRF3-222	ENST00000599144	LINC00869	P0C866	280 aa		13.31	□□□□□ -0.28
IRF3-222	ENST00000599144	RAP2B	P61225	183 aa		13.31	□□□□□ -0.28
IRF3-222	ENST00000599144	PPP1R1A	Q13522	171 aa		13.31	□□□□□ -0.28
IRF3-222	ENST00000599144	ESRG	Q1W209	222 aa		13.31	□□□□□ -0.28
IRF3-222	ENST00000599144	RNASE8	Q8TDE3	154 aa	Known RBP	13.31	□□□□□ -0.28
IRF3-222	ENST00000599144	RPUSD4	Q96CM3	377 aa	Known RBP	13.31	□□□□□ -0.28
IRF3-222	ENST00000599144	CIB3	Q96Q77	187 aa	Predicted RBP	13.31	□□□□□ -0.28
IRF3-222	ENST00000599144	GAGE12B	A1L429	117 aa		13.3	□□□□□ -0.28
IRF3-222	ENST00000599144	FABP12	A6NFH5	140 aa		13.3	□□□□□ -0.28
IRF3-222	ENST00000599144	HYPM	O75409	117 aa		13.3	□□□□□ -0.28
IRF3-222	ENST00000599144	GAGE7	O76087	117 aa		13.3	□□□□□ -0.28
IRF3-222	ENST00000599144	GAGE12F	P0CL80	117 aa		13.3	□□□□□ -0.28
IRF3-222	ENST00000599144	GAGE12G	P0CL81	117 aa		13.3	□□□□□ -0.28
IRF3-222	ENST00000599144	GAGE12I	P0CL82	117 aa		13.3	□□□□□ -0.28
IRF3-222	ENST00000599144	RPL7	P18124	248 aa	Known RBP	13.3	□□□□□ -0.28
IRF3-222	ENST00000599144	RRAS2	P62070	204 aa	Predicted RBP	13.3	□□□□□ -0.28
IRF3-222	ENST00000599144	RPP30	P78346	268 aa	Known RBP	13.3	□□□□□ -0.28
IRF3-222	ENST00000599144	TMEM128	Q5BJH2	165 aa		13.3	□□□□□ -0.28
IRF3-222	ENST00000599144	LRTM2	Q8N967	370 aa		13.3	□□□□□ -0.28
IRF3-222	ENST00000599144	LRRC20	Q8TCA0	184 aa		13.3	□□□□□ -0.28
IRF3-222	ENST00000599144	SOST	Q9BQB4	213 aa		13.3	□□□□□ -0.28
IRF3-222	ENST00000599144	STRAP	Q9Y3F4	350 aa	Known RBP	13.3	□□□□□ -0.28
IRF3-222	ENST00000599144	PRAC2	D3DTV9	90 aa		13.29	□□□□□ -0.28
IRF3-222	ENST00000599144		J3KRW8	73 aa		13.29	□□□□□ -0.28
IRF3-222	ENST00000599144	SFT2D2	O95562	160 aa		13.29	□□□□□ -0.28
IRF3-222	ENST00000599144	SLC25A6	P12236	298 aa		13.29	□□□□□ -0.28
IRF3-222	ENST00000599144	POLR2G	P62487	172 aa	Known RBP eCLIP	13.29	□□□□□ -0.28
IRF3-222	ENST00000599144	SPANXN2	Q5MJ10	180 aa		13.29	□□□□□ -0.28
IRF3-222	ENST00000599144	PATE2	Q6UY27	113 aa		13.29	□□□□□ -0.28
IRF3-222	ENST00000599144	TMEM256	Q8N2U0	113 aa		13.29	□□□□□ -0.28
IRF3-222	ENST00000599144	ZNF586	Q9NXT0	402 aa		13.29	□□□□□ -0.28
IRF3-222	ENST00000599144	PTTG2	Q9NZH5	202 aa		13.29	□□□□□ -0.28
IRF3-222	ENST00000599144	ADAP1	O75689	374 aa		13.28	□□□□□ -0.28
IRF3-222	ENST00000599144	CDKN1B	P46527	198 aa		13.28	□□□□□ -0.28
IRF3-222	ENST00000599144	TMEM263	Q8WUH6	116 aa	Known RBP	13.28	□□□□□ -0.28
IRF3-222	ENST00000599144		A0A087X0K7	114 aa		13.27	□□□□□ -0.29
IRF3-222	ENST00000599144	PMS2P5	A8MQ11	134 aa		13.27	□□□□□ -0.29
IRF3-222	ENST00000599144	MRPS12	O15235	138 aa	Known RBP	13.27	□□□□□ -0.29
IRF3-222	ENST00000599144	M6PR	P20645	277 aa		13.27	□□□□□ -0.29
IRF3-222	ENST00000599144	SLC38A11	Q08AI6	406 aa		13.27	□□□□□ -0.29
IRF3-222	ENST00000599144	LINC00299	Q6ZSB3	139 aa		13.27	□□□□□ -0.29
IRF3-222	ENST00000599144	RXFP4	Q8TDU9	374 aa		13.27	□□□□□ -0.29
IRF3-222	ENST00000599144	TRIM63	Q969Q1	353 aa		13.27	□□□□□ -0.29
IRF3-222	ENST00000599144	ARL6	Q9H0F7	186 aa		13.27	□□□□□ -0.29
IRF3-222	ENST00000599144		Q9H3A6	140 aa		13.27	□□□□□ -0.29
IRF3-222	ENST00000599144	ANXA7	P20073	488 aa	Known RBP	13.26	□□□□□ -0.29
IRF3-222	ENST00000599144	TTC32	Q5I0X7	151 aa		13.26	□□□□□ -0.29
IRF3-222	ENST00000599144	GFI1B	Q5VTD9	330 aa		13.26	□□□□□ -0.29
IRF3-222	ENST00000599144	ZNF493	Q6ZR52	646 aa		13.26	□□□□□ -0.29
IRF3-222	ENST00000599144	CCDC190	Q86UF4	302 aa		13.26	□□□□□ -0.29
IRF3-222	ENST00000599144	LINC00612	Q8N6U2	182 aa		13.26	□□□□□ -0.29
IRF3-222	ENST00000599144	PSENEN	Q9NZ42	101 aa		13.26	□□□□□ -0.29
IRF3-222	ENST00000599144		H7BYZ3	331 aa		13.25	□□□□□ -0.29
IRF3-222	ENST00000599144	SLC17A3	O00476	420 aa		13.25	□□□□□ -0.29
IRF3-222	ENST00000599144	SSSCA1	O60232	199 aa		13.25	□□□□□ -0.29
IRF3-222	ENST00000599144	S100A7	P31151	101 aa		13.25	□□□□□ -0.29
IRF3-222	ENST00000599144	PLP1	P60201	277 aa		13.25	□□□□□ -0.29
IRF3-222	ENST00000599144	OR10J6P	Q8NGY7	276 aa		13.25	□□□□□ -0.29
IRF3-222	ENST00000599144	ARV1	Q9H2C2	271 aa		13.25	□□□□□ -0.29
IRF3-222	ENST00000599144	TMPRSS5	Q9H3S3	457 aa		13.25	□□□□□ -0.29
IRF3-222	ENST00000599144	METTL15P1	P0C7V9	234 aa		13.24	□□□□□ -0.29
IRF3-222	ENST00000599144	FAU	P35544	74 aa	Known RBP	13.24	□□□□□ -0.29
IRF3-222	ENST00000599144	LINC00315	P59091	139 aa		13.24	□□□□□ -0.29
IRF3-222	ENST00000599144	PYDC2	Q56P42	97 aa		13.24	□□□□□ -0.29
IRF3-222	ENST00000599144	MORN5	Q5VZ52	161 aa		13.24	□□□□□ -0.29
IRF3-222	ENST00000599144	TOMM5	Q8N4H5	51 aa		13.24	□□□□□ -0.29
IRF3-222	ENST00000599144	ZNF331	Q9NQX6	463 aa	Predicted RBP	13.24	□□□□□ -0.29
IRF3-222	ENST00000599144	MRPS16	Q9Y3D3	137 aa	Known RBP	13.24	□□□□□ -0.29
IRF3-222	ENST00000599144	FAT1	Q14517	4588 aa		13.24	□□□□□ -0.29
IRF3-222	ENST00000599144	LINC00854	A0A1B0GVQ3	168 aa		13.23	□□□□□ -0.29
IRF3-222	ENST00000599144	RLN2	P04090	185 aa		13.23	□□□□□ -0.29
IRF3-222	ENST00000599144	ID3	Q02535	119 aa		13.23	□□□□□ -0.29
IRF3-222	ENST00000599144		Q6ZTI0	123 aa		13.23	□□□□□ -0.29
IRF3-222	ENST00000599144	UPK3B	Q9BT76	320 aa		13.23	□□□□□ -0.29
IRF3-222	ENST00000599144		V9GYH0	126 aa		13.23	□□□□□ -0.29
IRF3-222	ENST00000599144	TRAV12-3	A0A0B4J271	114 aa		13.22	□□□□□ -0.29
IRF3-222	ENST00000599144	PIGBOS1	A0A0B4J2F0	54 aa		13.22	□□□□□ -0.29
IRF3-222	ENST00000599144	CCDC28A	Q8IWP9	274 aa		13.22	□□□□□ -0.29
IRF3-222	ENST00000599144	ZBTB8B	Q8NAP8	495 aa	Predicted RBP	13.22	□□□□□ -0.29
IRF3-222	ENST00000599144	VSIG2	Q96IQ7	327 aa		13.22	□□□□□ -0.29
IRF3-222	ENST00000599144	TNFRSF18	Q9Y5U5	241 aa		13.22	□□□□□ -0.29
IRF3-222	ENST00000599144	SNURFL	B1AK76	121 aa		13.21	□□□□□ -0.29
IRF3-222	ENST00000599144	EPM2A	B3EWF7	344 aa		13.21	□□□□□ -0.29
IRF3-222	ENST00000599144	BTF3	P20290	206 aa	Known RBP	13.21	□□□□□ -0.29
IRF3-222	ENST00000599144	ARL16	Q0P5N6	197 aa		13.21	□□□□□ -0.29
IRF3-222	ENST00000599144	LINC00305	Q7Z4B0	112 aa		13.21	□□□□□ -0.29
IRF3-222	ENST00000599144	S100Z	Q8WXG8	99 aa		13.21	□□□□□ -0.29
IRF3-222	ENST00000599144		A0A096LPF7	62 aa		13.2	□□□□□ -0.3
IRF3-222	ENST00000599144	SCGB1D2	O95969	90 aa		13.2	□□□□□ -0.3
IRF3-222	ENST00000599144	CT45A10	P0DMU9	189 aa		13.2	□□□□□ -0.3
IRF3-222	ENST00000599144	SELENOT	P62341	195 aa		13.2	□□□□□ -0.3
IRF3-222	ENST00000599144	LCN15	Q6UWW0	184 aa		13.2	□□□□□ -0.3
IRF3-222	ENST00000599144		Q6ZRN7	208 aa	Predicted RBP	13.2	□□□□□ -0.3
IRF3-222	ENST00000599144	ZNF503	Q96F45	646 aa		13.2	□□□□□ -0.3
IRF3-222	ENST00000599144	SLC25A21	Q9BQT8	299 aa	Predicted RBP	13.2	□□□□□ -0.3
IRF3-222	ENST00000599144	FLVCR2	Q9UPI3	526 aa		13.2	□□□□□ -0.3
IRF3-222	ENST00000599144		A0A1W2PPQ1	181 aa		13.19	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms