RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 RXFP4Q8TDU9 374 aa11.6□□□□□ -0.55
TRIM28-209ENST00000597423 GLMPQ8WWB7 406 aa11.6□□□□□ -0.55
TRIM28-209ENST00000597423 CITED4Q96RK1 184 aa11.6□□□□□ -0.55
TRIM28-209ENST00000597423 RARRES2Q99969 163 aa11.6□□□□□ -0.55
TRIM28-209ENST00000597423 TCEAL7Q9BRU2 100 aa11.6□□□□□ -0.55
TRIM28-209ENST00000597423 AAMDCQ9H7C9 122 aa11.6□□□□□ -0.55
TRIM28-209ENST00000597423 ZNF586Q9NXT0 402 aa11.6□□□□□ -0.55
TRIM28-209ENST00000597423 TEP1Q99973 2627 aaKnown RBP11.6□□□□□ -0.55
TRIM28-209ENST00000597423 F6UZH7 168 aa11.59□□□□□ -0.55
TRIM28-209ENST00000597423 H3BQ15 152 aa11.59□□□□□ -0.55
TRIM28-209ENST00000597423 MRPS12O15235 138 aaKnown RBP11.59□□□□□ -0.55
TRIM28-209ENST00000597423 PAFAH1B2P68402 229 aa11.59□□□□□ -0.55
TRIM28-209ENST00000597423 ICAM4Q14773 271 aa11.59□□□□□ -0.55
TRIM28-209ENST00000597423 HIST2H2BDQ6DRA6 164 aa11.59□□□□□ -0.55
TRIM28-209ENST00000597423 SHISA2Q6UWI4 295 aa11.59□□□□□ -0.55
TRIM28-209ENST00000597423 DYNLRB2Q8TF09 96 aa11.59□□□□□ -0.55
TRIM28-209ENST00000597423 SLC50A1Q9BRV3 221 aa11.59□□□□□ -0.55
TRIM28-209ENST00000597423 SUMO1P63165 101 aaKnown RBP11.58□□□□□ -0.56
TRIM28-209ENST00000597423 TCF24Q7RTU0 167 aa11.58□□□□□ -0.56
TRIM28-209ENST00000597423 CMTM2Q8TAZ6 248 aa11.58□□□□□ -0.56
TRIM28-209ENST00000597423 SLC35B3Q9H1N7 401 aa11.58□□□□□ -0.56
TRIM28-209ENST00000597423 OTORQ9NRC9 128 aa11.58□□□□□ -0.56
TRIM28-209ENST00000597423 SIGLEC8Q9NYZ4 499 aa11.58□□□□□ -0.56
TRIM28-209ENST00000597423 PRELID1Q9Y255 219 aa11.58□□□□□ -0.56
TRIM28-209ENST00000597423 YTHDF2Q9Y5A9 579 aaKnown RBP11.58□□□□□ -0.56
TRIM28-209ENST00000597423 SMAD5-AS1Q9Y6J3 95 aa11.58□□□□□ -0.56
TRIM28-209ENST00000597423 CUBNO60494 3623 aa11.58□□□□□ -0.56
TRIM28-209ENST00000597423 PGPA6NDG6 321 aa11.57□□□□□ -0.56
TRIM28-209ENST00000597423 CSN3P07498 182 aa11.57□□□□□ -0.56
TRIM28-209ENST00000597423 CSN1S1P47710 185 aa11.57□□□□□ -0.56
TRIM28-209ENST00000597423 RBPMS2Q6ZRY4 209 aaKnown RBP11.57□□□□□ -0.56
TRIM28-209ENST00000597423 RPUSD4Q96CM3 377 aaKnown RBP11.57□□□□□ -0.56
TRIM28-209ENST00000597423 Q9H3A6 140 aa11.57□□□□□ -0.56
TRIM28-209ENST00000597423 NRN1Q9NPD7 142 aa11.57□□□□□ -0.56
TRIM28-209ENST00000597423 TMEM250H0YL14 139 aa11.56□□□□□ -0.56
TRIM28-209ENST00000597423 DNASE2O00115 360 aaPredicted RBP11.56□□□□□ -0.56
TRIM28-209ENST00000597423 SNRPCP09234 159 aaKnown RBP11.56□□□□□ -0.56
TRIM28-209ENST00000597423 ID1P41134 155 aa11.56□□□□□ -0.56
TRIM28-209ENST00000597423 ARL6IP6Q8N6S5 226 aa11.56□□□□□ -0.56
TRIM28-209ENST00000597423 C16orf92Q96LL3 132 aa11.56□□□□□ -0.56
TRIM28-209ENST00000597423 SETD2Q9BYW2 2564 aaPredicted RBP11.56□□□□□ -0.56
TRIM28-209ENST00000597423 H3BTX0 84 aa11.55□□□□□ -0.56
TRIM28-209ENST00000597423 NDUFB4O95168 129 aa11.55□□□□□ -0.56
TRIM28-209ENST00000597423 SLC25A5P05141 298 aaKnown RBP11.55□□□□□ -0.56
TRIM28-209ENST00000597423 CD81P60033 236 aa11.55□□□□□ -0.56
TRIM28-209ENST00000597423 SRSF3P84103 164 aaKnown RBP11.55□□□□□ -0.56
TRIM28-209ENST00000597423 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.55□□□□□ -0.56
TRIM28-209ENST00000597423 C5orf17Q8NAS9 161 aa11.55□□□□□ -0.56
TRIM28-209ENST00000597423 HIST1H2BAQ96A08 127 aa11.55□□□□□ -0.56
TRIM28-209ENST00000597423 MLXQ9UH92 298 aa11.55□□□□□ -0.56
TRIM28-209ENST00000597423 TRAV25A0A0B4J276 109 aa11.54□□□□□ -0.56
TRIM28-209ENST00000597423 TMEM218A2RU14 115 aa11.54□□□□□ -0.56
TRIM28-209ENST00000597423 KRBOX1C9JBD0 128 aa11.54□□□□□ -0.56
TRIM28-209ENST00000597423 K7EQM0 130 aa11.54□□□□□ -0.56
TRIM28-209ENST00000597423 S100A9P06702 114 aaKnown RBP11.54□□□□□ -0.56
TRIM28-209ENST00000597423 SRP19P09132 144 aaKnown RBP11.54□□□□□ -0.56
TRIM28-209ENST00000597423 ATP5G3P48201 142 aa11.54□□□□□ -0.56
TRIM28-209ENST00000597423 FAM74A3Q4VXF1 159 aa11.54□□□□□ -0.56
TRIM28-209ENST00000597423 SOHLH1Q5JUK2 328 aa11.54□□□□□ -0.56
TRIM28-209ENST00000597423 FAM90A2PQ658T7 463 aa11.54□□□□□ -0.56
TRIM28-209ENST00000597423 CCDC28AQ8IWP9 274 aa11.54□□□□□ -0.56
TRIM28-209ENST00000597423 C17orf77Q96MU5 243 aa11.54□□□□□ -0.56
TRIM28-209ENST00000597423 ZNF331Q9NQX6 463 aaPredicted RBP11.54□□□□□ -0.56
TRIM28-209ENST00000597423 EPDR1Q9UM22 224 aa11.54□□□□□ -0.56
TRIM28-209ENST00000597423 TRAV2A0A0B4J234 112 aa11.53□□□□□ -0.56
TRIM28-209ENST00000597423 GGTLC3B5MD39 225 aa11.53□□□□□ -0.56
TRIM28-209ENST00000597423 ISLRO14498 428 aa11.53□□□□□ -0.56
TRIM28-209ENST00000597423 CEBPGP53567 150 aa11.53□□□□□ -0.56
TRIM28-209ENST00000597423 DEFB114Q30KQ6 69 aa11.53□□□□□ -0.56
TRIM28-209ENST00000597423 EXOC3-AS1Q8N2X6 119 aa11.53□□□□□ -0.56
TRIM28-209ENST00000597423 LINC00482Q8N8I6 264 aa11.53□□□□□ -0.56
TRIM28-209ENST00000597423 OR2K2Q8NGT1 345 aa11.53□□□□□ -0.56
TRIM28-209ENST00000597423 MRPL53Q96EL3 112 aaKnown RBP11.53□□□□□ -0.56
TRIM28-209ENST00000597423 MCRIP2Q9BUT9 160 aaKnown RBP11.53□□□□□ -0.56
TRIM28-209ENST00000597423 SERTM2A0A1B0GWG4 89 aa11.52□□□□□ -0.57
TRIM28-209ENST00000597423 SAP30O75446 220 aa11.52□□□□□ -0.57
TRIM28-209ENST00000597423 SFTA3P0C7M3 94 aa11.52□□□□□ -0.57
TRIM28-209ENST00000597423 S100A1P23297 94 aa11.52□□□□□ -0.57
TRIM28-209ENST00000597423 INSL3P51460 131 aa11.52□□□□□ -0.57
TRIM28-209ENST00000597423 SNRPD3P62318 126 aaKnown RBP11.52□□□□□ -0.57
TRIM28-209ENST00000597423 ADAMTSL5Q6ZMM2 481 aa11.52□□□□□ -0.57
TRIM28-209ENST00000597423 MS4A6AQ9H2W1 248 aa11.52□□□□□ -0.57
TRIM28-209ENST00000597423 IGKV3-7A0A075B6H7 116 aa11.51□□□□□ -0.57
TRIM28-209ENST00000597423 FBLL1A6NHQ2 334 aaKnown RBP11.51□□□□□ -0.57
TRIM28-209ENST00000597423 C9JQL5 133 aa11.51□□□□□ -0.57
TRIM28-209ENST00000597423 F8W036 122 aa11.51□□□□□ -0.57
TRIM28-209ENST00000597423 TSPAN4O14817 238 aa11.51□□□□□ -0.57
TRIM28-209ENST00000597423 EDN2P20800 178 aa11.51□□□□□ -0.57
TRIM28-209ENST00000597423 CMC4P56277 68 aaPredicted RBP11.51□□□□□ -0.57
TRIM28-209ENST00000597423 GBGT1Q8N5D6 347 aa11.51□□□□□ -0.57
TRIM28-209ENST00000597423 CYB561D1Q8N8Q1 229 aa11.51□□□□□ -0.57
TRIM28-209ENST00000597423 C11orf52Q96A22 123 aa11.51□□□□□ -0.57
TRIM28-209ENST00000597423 ATG101Q9BSB4 218 aa11.51□□□□□ -0.57
TRIM28-209ENST00000597423 SLC17A3O00476 420 aa11.5□□□□□ -0.57
TRIM28-209ENST00000597423 PEX7O00628 323 aa11.5□□□□□ -0.57
TRIM28-209ENST00000597423 AKR1C3P42330 323 aa11.5□□□□□ -0.57
TRIM28-209ENST00000597423 CNN1P51911 297 aaKnown RBP11.5□□□□□ -0.57
TRIM28-209ENST00000597423 PSG3Q16557 428 aa11.5□□□□□ -0.57
TRIM28-209ENST00000597423 LCN12Q6JVE5 192 aa11.5□□□□□ -0.57
TRIM28-209ENST00000597423 WFDC3Q8IUB2 231 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 82.1 ms