RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 RAP2BP61225 183 aa6.87□□□□□ -1.31
LIG1-209ENST00000596104 RPP30P78346 268 aaKnown RBP6.87□□□□□ -1.31
LIG1-209ENST00000596104 DLK1P80370 383 aa6.87□□□□□ -1.31
LIG1-209ENST00000596104 KIR3DS1Q14943 382 aa6.87□□□□□ -1.31
LIG1-209ENST00000596104 TMEM128Q5BJH2 165 aa6.87□□□□□ -1.31
LIG1-209ENST00000596104 SPANXN5Q5MJ07 72 aa6.87□□□□□ -1.31
LIG1-209ENST00000596104 RPUSD4Q96CM3 377 aaKnown RBP6.87□□□□□ -1.31
LIG1-209ENST00000596104 SOSTQ9BQB4 213 aa6.87□□□□□ -1.31
LIG1-209ENST00000596104 C20orf144Q9BQM9 153 aa6.87□□□□□ -1.31
LIG1-209ENST00000596104 PPP1R14DQ9NXH3 145 aa6.87□□□□□ -1.31
LIG1-209ENST00000596104 ZNF586Q9NXT0 402 aa6.87□□□□□ -1.31
LIG1-209ENST00000596104 HIGD1AQ9Y241 93 aa6.87□□□□□ -1.31
LIG1-209ENST00000596104 GAGE12BA1L429 117 aa6.86□□□□□ -1.31
LIG1-209ENST00000596104 HYPMO75409 117 aa6.86□□□□□ -1.31
LIG1-209ENST00000596104 GAGE7O76087 117 aa6.86□□□□□ -1.31
LIG1-209ENST00000596104 IL5P05113 134 aa6.86□□□□□ -1.31
LIG1-209ENST00000596104 LINC00869P0C866 280 aa6.86□□□□□ -1.31
LIG1-209ENST00000596104 GAGE12FP0CL80 117 aa6.86□□□□□ -1.31
LIG1-209ENST00000596104 GAGE12GP0CL81 117 aa6.86□□□□□ -1.31
LIG1-209ENST00000596104 GAGE12IP0CL82 117 aa6.86□□□□□ -1.31
LIG1-209ENST00000596104 LINC00315P59091 139 aa6.86□□□□□ -1.31
LIG1-209ENST00000596104 GFI1BQ5VTD9 330 aa6.86□□□□□ -1.31
LIG1-209ENST00000596104 TMED4Q7Z7H5 227 aa6.86□□□□□ -1.31
LIG1-209ENST00000596104 PARD6GQ9BYG4 376 aaPredicted RBP6.86□□□□□ -1.31
LIG1-209ENST00000596104 RSL24D1Q9UHA3 163 aaKnown RBP6.86□□□□□ -1.31
LIG1-209ENST00000596104 PMS2P5A8MQ11 134 aa6.85□□□□□ -1.31
LIG1-209ENST00000596104 ADAP1O75689 374 aa6.85□□□□□ -1.31
LIG1-209ENST00000596104 OR5G3P0C626 314 aa6.85□□□□□ -1.31
LIG1-209ENST00000596104 VAMP1P23763 118 aa6.85□□□□□ -1.31
LIG1-209ENST00000596104 XGP55808 180 aa6.85□□□□□ -1.31
LIG1-209ENST00000596104 SELENOTP62341 195 aa6.85□□□□□ -1.31
LIG1-209ENST00000596104 PATE2Q6UY27 113 aa6.85□□□□□ -1.31
LIG1-209ENST00000596104 LYPD1Q8N2G4 141 aa6.85□□□□□ -1.31
LIG1-209ENST00000596104 DYNC2LI1Q8TCX1 351 aa6.85□□□□□ -1.31
LIG1-209ENST00000596104 ZNF331Q9NQX6 463 aaPredicted RBP6.85□□□□□ -1.31
LIG1-209ENST00000596104 STRAPQ9Y3F4 350 aaKnown RBP6.85□□□□□ -1.31
LIG1-209ENST00000596104 FAT1Q14517 4588 aa6.84□□□□□ -1.31
LIG1-209ENST00000596104 A0A096LPF7 62 aa6.84□□□□□ -1.31
LIG1-209ENST00000596104 SMCO3A2RU48 225 aa6.84□□□□□ -1.31
LIG1-209ENST00000596104 PRAC2D3DTV9 90 aa6.84□□□□□ -1.31
LIG1-209ENST00000596104 K7EPK0 472 aa6.84□□□□□ -1.31
LIG1-209ENST00000596104 SFT2D2O95562 160 aa6.84□□□□□ -1.31
LIG1-209ENST00000596104 RLN2P04090 185 aa6.84□□□□□ -1.31
LIG1-209ENST00000596104 INAFM2P0DMQ5 153 aa6.84□□□□□ -1.31
LIG1-209ENST00000596104 CXCL2P19875 107 aa6.84□□□□□ -1.31
LIG1-209ENST00000596104 FUSP35637 526 aaKnown RBP eCLIP6.84□□□□□ -1.31
LIG1-209ENST00000596104 ID3Q02535 119 aa6.84□□□□□ -1.31
LIG1-209ENST00000596104 PPP1R1AQ13522 171 aa6.84□□□□□ -1.31
LIG1-209ENST00000596104 CCDC28AQ8IWP9 274 aa6.84□□□□□ -1.31
LIG1-209ENST00000596104 ZBTB8BQ8NAP8 495 aaPredicted RBP6.84□□□□□ -1.31
LIG1-209ENST00000596104 LRRC20Q8TCA0 184 aa6.84□□□□□ -1.31
LIG1-209ENST00000596104 TRIM63Q969Q1 353 aa6.84□□□□□ -1.31
LIG1-209ENST00000596104 VSIG2Q96IQ7 327 aa6.84□□□□□ -1.31
LIG1-209ENST00000596104 TMPRSS5Q9H3S3 457 aa6.84□□□□□ -1.31
LIG1-209ENST00000596104 PGPEP1Q9NXJ5 209 aa6.84□□□□□ -1.31
LIG1-209ENST00000596104 CCDC59Q9P031 241 aaKnown RBP6.84□□□□□ -1.31
LIG1-209ENST00000596104 CCNKO75909 580 aa6.83□□□□□ -1.32
LIG1-209ENST00000596104 HOXB5P09067 269 aa6.83□□□□□ -1.32
LIG1-209ENST00000596104 POLR2GP62487 172 aaKnown RBP eCLIP6.83□□□□□ -1.32
LIG1-209ENST00000596104 DAZ2Q13117 558 aaKnown RBP6.83□□□□□ -1.32
LIG1-209ENST00000596104 LCN15Q6UWW0 184 aa6.83□□□□□ -1.32
LIG1-209ENST00000596104 Q6ZTI0 123 aa6.83□□□□□ -1.32
LIG1-209ENST00000596104 SLC50A1Q9BRV3 221 aa6.83□□□□□ -1.32
LIG1-209ENST00000596104 ARL6Q9H0F7 186 aa6.83□□□□□ -1.32
LIG1-209ENST00000596104 ARV1Q9H2C2 271 aa6.83□□□□□ -1.32
LIG1-209ENST00000596104 LINC00854A0A1B0GVQ3 168 aa6.82□□□□□ -1.32
LIG1-209ENST00000596104 FABP12A6NFH5 140 aa6.82□□□□□ -1.32
LIG1-209ENST00000596104 SNURFLB1AK76 121 aa6.82□□□□□ -1.32
LIG1-209ENST00000596104 FNDC10F2Z333 226 aa6.82□□□□□ -1.32
LIG1-209ENST00000596104 SLC17A3O00476 420 aa6.82□□□□□ -1.32
LIG1-209ENST00000596104 SNRPCP09234 159 aaKnown RBP6.82□□□□□ -1.32
LIG1-209ENST00000596104 ANXA7P20073 488 aaKnown RBP6.82□□□□□ -1.32
LIG1-209ENST00000596104 TNFSF8P32971 234 aa6.82□□□□□ -1.32
LIG1-209ENST00000596104 FAUP35544 74 aaKnown RBP6.82□□□□□ -1.32
LIG1-209ENST00000596104 C4orf46Q504U0 113 aa6.82□□□□□ -1.32
LIG1-209ENST00000596104 CDPF1Q6NVV7 123 aa6.82□□□□□ -1.32
LIG1-209ENST00000596104 TMEM14EPQ6UXP3 125 aa6.82□□□□□ -1.32
LIG1-209ENST00000596104 S100A7AQ86SG5 101 aa6.82□□□□□ -1.32
LIG1-209ENST00000596104 C18orf15Q96N68 181 aa6.82□□□□□ -1.32
LIG1-209ENST00000596104 SLC25A21Q9BQT8 299 aaPredicted RBP6.82□□□□□ -1.32
LIG1-209ENST00000596104 SLIRPQ9GZT3 109 aaKnown RBP6.82□□□□□ -1.32
LIG1-209ENST00000596104 PSENENQ9NZ42 101 aa6.82□□□□□ -1.32
LIG1-209ENST00000596104 H3BTX0 84 aa6.81□□□□□ -1.32
LIG1-209ENST00000596104 SIVA1O15304 175 aa6.81□□□□□ -1.32
LIG1-209ENST00000596104 CT45A10P0DMU9 189 aa6.81□□□□□ -1.32
LIG1-209ENST00000596104 KRTAP10-1P60331 282 aa6.81□□□□□ -1.32
LIG1-209ENST00000596104 RRAS2P62070 204 aaPredicted RBP6.81□□□□□ -1.32
LIG1-209ENST00000596104 SLC38A11Q08AI6 406 aa6.81□□□□□ -1.32
LIG1-209ENST00000596104 PXDC1Q5TGL8 231 aa6.81□□□□□ -1.32
LIG1-209ENST00000596104 Q5VSD8 79 aa6.81□□□□□ -1.32
LIG1-209ENST00000596104 MORN5Q5VZ52 161 aa6.81□□□□□ -1.32
LIG1-209ENST00000596104 CCDC190Q86UF4 302 aa6.81□□□□□ -1.32
LIG1-209ENST00000596104 C11orf72Q8NBR9 251 aa6.81□□□□□ -1.32
LIG1-209ENST00000596104 ZNF431Q8TF32 576 aaPredicted RBP6.81□□□□□ -1.32
LIG1-209ENST00000596104 SAT2Q96F10 170 aaPredicted RBP6.81□□□□□ -1.32
LIG1-209ENST00000596104 SMIM8Q96KF7 97 aa6.81□□□□□ -1.32
LIG1-209ENST00000596104 ODF3Q96PU9 254 aa6.81□□□□□ -1.32
LIG1-209ENST00000596104 PYGO2Q9BRQ0 406 aa6.81□□□□□ -1.32
LIG1-209ENST00000596104 NPVFQ9HCQ7 196 aa6.81□□□□□ -1.32
LIG1-209ENST00000596104 RNF24Q9Y225 148 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms