RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 ZNF253O75346 499 aa11.17□□□□□ -0.62
SHKBP1-211ENST00000595945 SNRPCP09234 159 aaKnown RBP11.17□□□□□ -0.62
SHKBP1-211ENST00000595945 GALR1P47211 349 aa11.17□□□□□ -0.62
SHKBP1-211ENST00000595945 ATP5G3P48201 142 aa11.17□□□□□ -0.62
SHKBP1-211ENST00000595945 PDE6HQ13956 83 aa11.17□□□□□ -0.62
SHKBP1-211ENST00000595945 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.17□□□□□ -0.62
SHKBP1-211ENST00000595945 SIGLEC15Q6ZMC9 328 aa11.17□□□□□ -0.62
SHKBP1-211ENST00000595945 BLNKQ8WV28 456 aa11.17□□□□□ -0.62
SHKBP1-211ENST00000595945 CITED4Q96RK1 184 aa11.17□□□□□ -0.62
SHKBP1-211ENST00000595945 ELOVL1Q9BW60 279 aa11.17□□□□□ -0.62
SHKBP1-211ENST00000595945 GGTLC3B5MD39 225 aa11.16□□□□□ -0.62
SHKBP1-211ENST00000595945 SLC17A3O00476 420 aa11.16□□□□□ -0.62
SHKBP1-211ENST00000595945 CSN3P07498 182 aa11.16□□□□□ -0.62
SHKBP1-211ENST00000595945 ATF4P18848 351 aaPredicted RBP11.16□□□□□ -0.62
SHKBP1-211ENST00000595945 CBLN1P23435 193 aa11.16□□□□□ -0.62
SHKBP1-211ENST00000595945 BMI1P35226 326 aa11.16□□□□□ -0.62
SHKBP1-211ENST00000595945 CST9LP1Q5W188 147 aa11.16□□□□□ -0.62
SHKBP1-211ENST00000595945 FAM90A2PQ658T7 463 aa11.16□□□□□ -0.62
SHKBP1-211ENST00000595945 LYPD1Q8N2G4 141 aa11.16□□□□□ -0.62
SHKBP1-211ENST00000595945 NKX6-2Q9C056 277 aaPredicted RBP11.16□□□□□ -0.62
SHKBP1-211ENST00000595945 TREM1Q9NP99 234 aa11.16□□□□□ -0.62
SHKBP1-211ENST00000595945 PEMTQ9UBM1 199 aa11.16□□□□□ -0.62
SHKBP1-211ENST00000595945 NOTCH3Q9UM47 2321 aa11.15□□□□□ -0.62
SHKBP1-211ENST00000595945 TMEM218A2RU14 115 aa11.15□□□□□ -0.62
SHKBP1-211ENST00000595945 HELTA6NFD8 242 aa11.15□□□□□ -0.62
SHKBP1-211ENST00000595945 ATP6V1G1O75348 118 aa11.15□□□□□ -0.62
SHKBP1-211ENST00000595945 FOLR2P14207 255 aa11.15□□□□□ -0.62
SHKBP1-211ENST00000595945 MEOX2P50222 304 aa11.15□□□□□ -0.62
SHKBP1-211ENST00000595945 C11orf52Q96A22 123 aa11.15□□□□□ -0.62
SHKBP1-211ENST00000595945 ZNF747Q9BV97 191 aa11.15□□□□□ -0.62
SHKBP1-211ENST00000595945 SLC35B3Q9H1N7 401 aa11.15□□□□□ -0.62
SHKBP1-211ENST00000595945 OTORQ9NRC9 128 aa11.15□□□□□ -0.62
SHKBP1-211ENST00000595945 ZNF785A8K8V0 405 aa11.14□□□□□ -0.63
SHKBP1-211ENST00000595945 F6UZH7 168 aa11.14□□□□□ -0.63
SHKBP1-211ENST00000595945 TMEM250H0YL14 139 aa11.14□□□□□ -0.63
SHKBP1-211ENST00000595945 OVOL1O14753 267 aa11.14□□□□□ -0.63
SHKBP1-211ENST00000595945 RANP62826 216 aaKnown RBP11.14□□□□□ -0.63
SHKBP1-211ENST00000595945 SUMO1P63165 101 aaKnown RBP11.14□□□□□ -0.63
SHKBP1-211ENST00000595945 TCF24Q7RTU0 167 aa11.14□□□□□ -0.63
SHKBP1-211ENST00000595945 Q9H3A6 140 aa11.14□□□□□ -0.63
SHKBP1-211ENST00000595945 SIGLEC8Q9NYZ4 499 aa11.14□□□□□ -0.63
SHKBP1-211ENST00000595945 MLXQ9UH92 298 aa11.14□□□□□ -0.63
SHKBP1-211ENST00000595945 SOCS3O14543 225 aa11.13□□□□□ -0.63
SHKBP1-211ENST00000595945 PDE6DO43924 150 aa11.13□□□□□ -0.63
SHKBP1-211ENST00000595945 SFTA3P0C7M3 94 aa11.13□□□□□ -0.63
SHKBP1-211ENST00000595945 PSG9Q00887 426 aa11.13□□□□□ -0.63
SHKBP1-211ENST00000595945 CYB561D1Q8N8Q1 229 aa11.13□□□□□ -0.63
SHKBP1-211ENST00000595945 TCEAL7Q9BRU2 100 aa11.13□□□□□ -0.63
SHKBP1-211ENST00000595945 ZNF331Q9NQX6 463 aaPredicted RBP11.13□□□□□ -0.63
SHKBP1-211ENST00000595945 TRAV8-2A0A0B4J237 113 aa11.12□□□□□ -0.63
SHKBP1-211ENST00000595945 PGPA6NDG6 321 aa11.12□□□□□ -0.63
SHKBP1-211ENST00000595945 M0QZ24 198 aa11.12□□□□□ -0.63
SHKBP1-211ENST00000595945 ADCYAP1P18509 176 aa11.12□□□□□ -0.63
SHKBP1-211ENST00000595945 C10orf91Q5T1B1 145 aa11.12□□□□□ -0.63
SHKBP1-211ENST00000595945 LINC00482Q8N8I6 264 aa11.12□□□□□ -0.63
SHKBP1-211ENST00000595945 TMEM158Q8WZ71 300 aa11.12□□□□□ -0.63
SHKBP1-211ENST00000595945 LINC00052Q96N35 136 aa11.12□□□□□ -0.63
SHKBP1-211ENST00000595945 SLC50A1Q9BRV3 221 aa11.12□□□□□ -0.63
SHKBP1-211ENST00000595945 NRN1Q9NPD7 142 aa11.12□□□□□ -0.63
SHKBP1-211ENST00000595945 SCO2A0A1W2PP80 73 aa11.11□□□□□ -0.63
SHKBP1-211ENST00000595945 EXOC3-AS1Q8N2X6 119 aa11.11□□□□□ -0.63
SHKBP1-211ENST00000595945 ARL6IP6Q8N6S5 226 aa11.11□□□□□ -0.63
SHKBP1-211ENST00000595945 C5orf17Q8NAS9 161 aa11.11□□□□□ -0.63
SHKBP1-211ENST00000595945 KRBOX1C9JBD0 128 aa11.1□□□□□ -0.63
SHKBP1-211ENST00000595945 SLC25A5P05141 298 aaKnown RBP11.1□□□□□ -0.63
SHKBP1-211ENST00000595945 DEFB114Q30KQ6 69 aa11.1□□□□□ -0.63
SHKBP1-211ENST00000595945 C2CD4CQ8TF44 421 aa11.1□□□□□ -0.63
SHKBP1-211ENST00000595945 DCANP1Q8TF63 244 aa11.1□□□□□ -0.63
SHKBP1-211ENST00000595945 SEC11CQ9BY50 192 aa11.1□□□□□ -0.63
SHKBP1-211ENST00000595945 EPDR1Q9UM22 224 aa11.1□□□□□ -0.63
SHKBP1-211ENST00000595945 SELENOKQ9Y6D0 94 aa11.1□□□□□ -0.63
SHKBP1-211ENST00000595945 PEX7O00628 323 aa11.09□□□□□ -0.63
SHKBP1-211ENST00000595945 PF4P02776 101 aa11.09□□□□□ -0.63
SHKBP1-211ENST00000595945 HLA-DMBP28068 263 aa11.09□□□□□ -0.63
SHKBP1-211ENST00000595945 GNG5P63218 68 aa11.09□□□□□ -0.63
SHKBP1-211ENST00000595945 SOHLH1Q5JUK2 328 aa11.09□□□□□ -0.63
SHKBP1-211ENST00000595945 HIST1H2BAQ96A08 127 aa11.09□□□□□ -0.63
SHKBP1-211ENST00000595945 AAMDCQ9H7C9 122 aa11.09□□□□□ -0.63
SHKBP1-211ENST00000595945 CLEC5AQ9NY25 188 aa11.09□□□□□ -0.63
SHKBP1-211ENST00000595945 PRELID1Q9Y255 219 aa11.09□□□□□ -0.63
SHKBP1-211ENST00000595945 CARHSP1Q9Y2V2 147 aaKnown RBP11.09□□□□□ -0.63
SHKBP1-211ENST00000595945 TRAV2A0A0B4J234 112 aa11.08□□□□□ -0.64
SHKBP1-211ENST00000595945 K7EQG2 157 aa11.08□□□□□ -0.64
SHKBP1-211ENST00000595945 M0R3E3 92 aa11.08□□□□□ -0.64
SHKBP1-211ENST00000595945 TCRAP04437 139 aa11.08□□□□□ -0.64
SHKBP1-211ENST00000595945 S100A1P23297 94 aa11.08□□□□□ -0.64
SHKBP1-211ENST00000595945 SAMD13Q5VXD3 122 aa11.08□□□□□ -0.64
SHKBP1-211ENST00000595945 IGFL4Q6B9Z1 124 aa11.08□□□□□ -0.64
SHKBP1-211ENST00000595945 DYNLRB2Q8TF09 96 aa11.08□□□□□ -0.64
SHKBP1-211ENST00000595945 RPUSD4Q96CM3 377 aaKnown RBP11.08□□□□□ -0.64
SHKBP1-211ENST00000595945 MRPL53Q96EL3 112 aaKnown RBP11.08□□□□□ -0.64
SHKBP1-211ENST00000595945 MS4A6AQ9H2W1 248 aa11.08□□□□□ -0.64
SHKBP1-211ENST00000595945 PARLQ9H300 379 aa11.08□□□□□ -0.64
SHKBP1-211ENST00000595945 TRAV25A0A0B4J276 109 aa11.07□□□□□ -0.64
SHKBP1-211ENST00000595945 DIRC3C9JPN6 131 aa11.07□□□□□ -0.64
SHKBP1-211ENST00000595945 F8W036 122 aa11.07□□□□□ -0.64
SHKBP1-211ENST00000595945 ISLRO14498 428 aa11.07□□□□□ -0.64
SHKBP1-211ENST00000595945 TSPAN4O14817 238 aa11.07□□□□□ -0.64
SHKBP1-211ENST00000595945 RPL11P62913 178 aaKnown RBP11.07□□□□□ -0.64
SHKBP1-211ENST00000595945 PSG3Q16557 428 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms